| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 3836344 = | 79 (1.400) | 4 (0.080) | 3/92 | NT | 5.6% | coding (95/1110 nt) | rfaB | UDP‑D‑galactose:(glucosyl)lipopolysaccharide‑1, 6‑D‑galactosyltransferase |
| ? | W3110S.gb | 3836373 = | 64 (1.260) | coding (124/1110 nt) | rfaB | UDP‑D‑galactose:(glucosyl)lipopolysaccharide‑1, 6‑D‑galactosyltransferase | |||||
Only 100 of 114 total aligned reads displayed.
GTTTCTATGAAAATAGCGTTTATCGGCGAAGCTGTTTCTGGATTTGGCGGCATGGAAACTGTCATCCGTGATGTTATTACTACCTTCAGGCAACAACATATCCAAAGTGAAATGTTTTTCTTTTGTCGTAATGACAAAAT > W3110S.gb/3836274‑3836413 | gTTTCTATGAAAATAGCGTTTATCGGCGAAGCTGTTTCTGGATTTGGCGGCATGGAAACTGTCATCTGTGa < 1:4867774/71‑1 (MQ=255) taataccttccagccatcccttatccattttgtcattacgacaaaagaaaaacatttcactttggatATGt < 1:4943948‑M1/4‑1 (MQ=255) tCTATGAAAATAGCGTTTATCGGCGAAGCTGTTTCTGGATTTCGCGGCATGGAAACTGTCATCCGTGATGt > 1:3225942/1‑71 (MQ=255) aataccttccagccatcccttatccattttgtcattacgacaaaagaaaaacatttcactttggatATGtt < 1:1140275‑M1/5‑1 (MQ=255) aataccttccagccatcccttatccattttgtcattacgacaaaagaaaaacatttcactttggatATGtt < 1:143185‑M1/5‑1 (MQ=255) aataccttccagccatcccttatccattttgtcattacgacaaaagaaaaacatttcactttggatATGt > 1:2748517‑M1/67‑70 (MQ=255) ataccttccagccatcccttatccattttgtcattacgacaaaagaaaaacatttcactttggatATGtt > 1:4639009‑M1/66‑70 (MQ=255) ataccttccagccatcccttatccattttgtcattacgacaaaagaaaaacatttcactttggatATGtt > 1:198130‑M1/66‑70 (MQ=255) tGAAAATATCGTTTATCGGCGAAGCTGTTTCTGGATTTGGCGGCATGGAAACTGTCATCCGTGATGttat < 1:4947131/70‑1 (MQ=255) tGAAAATAGCGTTTATCGGCGAAGCTGTTTCTGGATTTGGCGGCATGGAAACTGTCATCCGTGATGttat > 1:2195923/1‑70 (MQ=255) aaaaTAGCGTTTATCGGCGAAGCTGTTTCTGGATTTGGCGGCATGGAAACTGTCATCCGTGATGtta > 1:4379116/1‑67 (MQ=255) aaaaTAGCGTTTATCGGCGAAGCTGTTTCTGGATTTGGCGGCATGGAAACTGTCATCCGTGATGTTATtac > 1:5177987/1‑71 (MQ=255) ttccagccatcccttatccattttgtcattacgacaaaagaaaaacatttcactttggatATg > 1:277007‑M1/61‑63 (MQ=255) aaaTAGCGTTTATCGGCGAAGCTGTTTCTGGATTTGGCGGCATGGAAACTGTCATCCGTGATGTTATtact < 1:3594599/71‑1 (MQ=255) aaTAGCGTTTATCGGCGAAGCTGTTTCTGGATTTGGCGGCATGGAAACTGTCATCCGTGATGttat < 1:4548318/66‑1 (MQ=255) aaTAGCGTTTATCGGCGAAGCTGTTTCTGGATTTGGCGGCATGGAAACTGTCATCCGTGATGTTATtacta > 1:218338/1‑71 (MQ=255) gCGTTTATCGGCGAAGCTGTTTCTGGATTTGGCGGCATGGAAACTGTCATCCGTGATGTTATTACTACCtt > 1:456430/1‑71 (MQ=255) cGTTTATCGGCGAAGCTGTTTCTGGATTTGGCGGCATGGAAACTGTCATCCGTGATGTTATTACTACCTTc < 1:3601701/71‑1 (MQ=255) gTTTATCGGCGAAGCTGTTTCTGGATTTGGCGGCATGGAAACTGTCATCCGTGATGttat < 1:4797248/60‑1 (MQ=255) ttATCGGCGAAGCTGTTTCTGGATTTGGCGGCATGGAAACTGTCATCCGTGATGttatta > 1:5169444/1‑60 (MQ=255) ttATCGGCGAAGCTGTTTCTGGATTTGGCGGCATGGAAACTGTCATCCGTGATGttatta > 1:5163813/1‑60 (MQ=255) ttATCGGCGAAGCTGTTTCTGGATTTGGCGGCATGGAAACTGTCATCCGTGATGtta > 1:3575055/1‑57 (MQ=255) ttATCGGCGAAGCTGTTTCTGGATTTGGCGGCATGGAAACTGTCATCCGTGATGTTATTACTACCt < 1:698929/66‑1 (MQ=255) ttATCGGCGAAGCTGTTTCTGGATTTGGCGGCATGGAAACTGTCATCCGTGATGTTATTACTACCTTCAgg > 1:2191236/1‑71 (MQ=255) tATCGGCGAAGCTGTTTCTGGATTTGGCGGCATGGAAACTGTCATCCGTGATGTTATTACTACCTTCAgg > 1:5047345/1‑70 (MQ=255) ccttatccattttgtcattacgacaaaagaaaaacatttcactttggatATGtt > 1:4710984‑M1/50‑54 (MQ=255) tCGGCGAAGCTGTTTCTGGATTTGGCGGCATGGAAACTGTCATCCGTGATGtta > 1:878745/1‑54 (MQ=255) ttatccattttgtcattacgacaaaagaaaaacatttcattttggatATg < 1:344699‑M1/3‑1 (MQ=255) ttatccattttgtcattacgacaaaagaaaaacatttcactttggatATg < 1:2049369‑M1/3‑1 (MQ=255) ggCGAAGCTGTTTCTGGATTTGGCGGCATGGAAACTGTCATCCGTGATGTTATTACTACCTTCAGGcaac > 1:2710522/1‑70 (MQ=255) gCGAAGCTGTTTCTGGATTTGGCGGCATGGAAACTGTCATCCGTGATGTTATTACTACCTTCAGGcaaca < 1:1697766/70‑1 (MQ=255) gCGAAGCTGTTTCTGGATTTGGCGGCATGGAAACTGTCATCCGTGATGTTATTACTACCTTCAGGcaac > 1:3100522/1‑69 (MQ=255) gAAGCTGTTTCTGGATTTGGCGGCATGGAAACTGTCATCCGTGATGTTATTACTACCTTCAGGCaacaac > 1:1940931/1‑70 (MQ=255) gAAGCTGTTTCTGGATTTGGCGGCATGGAAACTGTCATCCGTGATGTTATTACTACCTTCAGGCaacaac > 1:4862779/1‑70 (MQ=255) gAAGCTGTTTCTGGATTTGGCGGCATGGAAACTGTCATCCGTGATGTTATTACTACCTTCAGGCAacaaca > 1:2188322/1‑71 (MQ=255) gAAGCTGTTTCTGGATTTGGCGGCATGGAAACTGTCATCCGTGATGTTATTACTACCTTAAGGCAacaaca > 1:2549062/1‑71 (MQ=255) aGCTGTTTCTGGATTTGGCGGCATGGAAACTGTCATCCGTGATGTTATTACTACCTTCAGGCAACAACata < 1:5113076/71‑1 (MQ=255) ttttgtcattacgacaaaagaaaaacatttcactttggatATg > 1:3293125‑M1/41‑43 (MQ=255) ttgtcattacgacaaaagaaaaacatttcactttggatATGt < 1:3045519‑M1/4‑1 (MQ=255) tgtcattacgacaaaagaaaaacatttcactttggatATGTTATTACTACCTTCAGGCAACAACATATcc < 1:4095011‑M1/33‑1 (MQ=255) gTTTCTGGATTTGGCGGCATGGAAACTGTCATCCGTGATGTTATtac > 1:3468927/1‑47 (MQ=255) gTTTCTGGATTTGGCGGCATGGAAACTGTCATCCGTGATGTTATTACTACCTTc < 1:2339666/54‑1 (MQ=255) tttCTGGATTTGGCGGCATGGAAACTGTCATCCGTGATGTTATTACTACCTTCAGGcaac < 1:3573554/60‑1 (MQ=255) tttCTGGATTTGGCGGCATGGAAACTGTCATCCGTGATGTTATTACTACCTTCAGGCAACAACATATCCa > 1:879033/1‑70 (MQ=255) tttCTGGATTTGGCGGCATGGAAACTGTCATCCGTGATGTTATTACTACCTTCAGGCAACAACATATCCa < 1:3835513/70‑1 (MQ=255) tttCTGGATTTGGCGGCATGGAAACTGTCATCCGTGATGTTATTACTACCTTCAGGCAACAACATATCCa > 1:2479494/1‑70 (MQ=255) ttCTGGATTTGGCGGCATGGAAACTGTCATCCGTGATGTTATTACTACCTTCa < 1:2335123/53‑1 (MQ=255) ttacgacaaaagaaaaacatttcactttggatATGt > 1:3056480‑M1/33‑36 (MQ=255) tGGATTTGGCGGCATGGAAACTGTCATCCGTGATGTTATTACTACCTTc < 1:2201629/49‑1 (MQ=255) ggATTTGGCGGCATGGAAACTGTCATCCGTGATGTTATTACTACCTTCAGGCAACAACATATCCAAAGTg > 1:3730041/1‑70 (MQ=255) aTTTGGCGGCATGGAAACTGTCATCCGTGATGTTATTACTACCTTCAGGCAACAACATATCCAAAGTGaa > 1:327391/1‑70 (MQ=255) ggcggcATGGAAACTGTCATCCGTGATGTTATTACTACCTTCAGGCAACAACATATCCAAAGTGAAATGtt > 1:69145/1‑71 (MQ=255) aaagaaaaacatttcactttggatATGTTATTACTACCTTCAGGc > 1:4635366‑M1/25‑45 (MQ=255) ggcATGGAAACTGTCATCCGTGATGTTATTACTACCTTCAg > 1:3661304/1‑41 (MQ=255) ggcATGGAAACTGTCATCCGTGATGTTATTACTACCTTCAGGCAACAACATATCCAAAGTGAAATGttttt > 1:366115/1‑71 (MQ=255) cATGGAAACTGTCATCCGTGATGTTATTACTACCTTCAGGCAACAACATATCCAAAGTGAAATGTTTTTCt > 1:2786425/1‑71 (MQ=255) tGGAAACTGTCATCCGTGATTTTATTACTACCTTCAGGCAACAACATATCCAAAGTGAAATGTTTTTc < 1:3581357/68‑1 (MQ=255) tGGAAACTGTCATCCGTGATGTTATTACTACCTTCAGGCAACAACATATCCAAAGTGaa < 1:1359097/59‑1 (MQ=255) ggAAACTGTCATCCGTGATGTTATTACTACCTTCAGGCAACAACATATCCAAAGTGAAATGTTTTTCtttt > 1:1275280/1‑71 (MQ=255) ggAAACTGTCATCCGTGATGTTATTACTACCTTCAGGCAACAACATATCCAAAGTGAAATGTTTTTCtttt > 1:4947899/1‑71 (MQ=255) gAAACTGTCATCCGTGGTGTTATTACTACCTTCAGGCAACAACATATCCAAAGTGAAATGTTTTTCTTTTg > 1:925160/1‑71 (MQ=255) gAAACTGTCATCCGTGATGTTATTACTACCTTCAGGCAACAACATATCCAAAGTGa < 1:2214558/56‑1 (MQ=255) gAAACTGTCATCCGTGATGTTATTACTACCTTCAGGCAACAACATATCCAAAGTGAAATGTTTTTCTTTTg > 1:498515/1‑71 (MQ=255) acatttcactttggatATGTTATTACTACCTTCAGGc < 1:222186‑M1/21‑1 (MQ=255) acatttcactttggatATGTTATTACTACCTTCAGGc < 1:712733‑M1/21‑1 (MQ=255) aaaCTGTCATCCGTGATGTTATTACTACCTTCAGGCAACAACATATCCAAAGTGAAATGTTTTTCtt < 1:4040967/67‑1 (MQ=255) aaCTGTAATCCGTGATGTTATTACTACCTTCAGGCAACAACATATCCAAAGTGAAATGTTTTTCTTTTGTc > 1:620/1‑71 (MQ=255) aCTGTCATCCGTGATGTTATTACTACCTTCAGGCAacaaca > 1:3016240/1‑41 (MQ=255) aCTGTCATCCGTGATGTTATTACTACCTTCAGGCAacaaca > 1:599619/1‑41 (MQ=255) aCTGTCATCCGTGATGTTATTACTACCTTCAGGCAACAACATATCCAAAGTGAAATGTTTTTCTTTTGTCg > 1:1440602/1‑71 (MQ=255) aCTGTCATCCGTGATGATATTACTACCTTCAGGCAacaaca > 1:3340371/1‑41 (MQ=255) cTGTCATCCGTGATGTTATTACTACCTTCAGGCAACAACATATCCAAAGTGAAATGTTTTTCTTTTGTCGt < 1:188628/71‑1 (MQ=255) tGTCATCCGTGATGTTATTACTACCTTCAGGCAacaaca > 1:632379/1‑39 (MQ=255) tGTCATCCGTGATGTTATTACTACCTTCAGGCAACAACATATCCAAAGTGAAATGTTTTTCTTTTGTCg > 1:39445/1‑69 (MQ=255) gTCATCCGTGATGTTATTACTACCTTCAGGCAACAACATATCCa < 1:3470917/44‑1 (MQ=255) gTCATCCGTGATGTTATTACTACCTTCAGGCAACAACATATCCa < 1:4015112/44‑1 (MQ=255) tCATCCGTGATGTTATTACTACCTTCAGGCAACAACATATCCAAAGTGAAATGTTTTTCTTTTGTCGTa < 1:632042/69‑1 (MQ=255) cATCCGTGATGTTATTACTACCTTCAGGCAACAACatat > 1:2683746/1‑39 (MQ=255) cATCCGTGATGTTATTACTACCTTCAGGCAACAACatat > 1:4072622/1‑39 (MQ=255) cATCCGTGATGTTATTACTACCTTCAGGCAACAACATATCCAAAGTGaaa > 1:5065051/1‑50 (MQ=255) cATCCGTGATGTTATTACTACCTTCAGGCAACAACATATACAAAGTGaaa > 1:1544577/1‑50 (MQ=255) aTCCGTGATGTTATTACTACCTTCAGGCAacaaca > 1:1310848/1‑35 (MQ=255) aTCCGTGATGTTATTACTACCTTCAGGCAacaaca > 1:1024932/1‑35 (MQ=255) aTCCGTGATGTTATTACTACCTTCAGGCAacaaca > 1:2067189/1‑35 (MQ=255) aTCCGTGATGTTATTACTACCTTCAGGCAACAACATATCCAAAGTGa < 1:916301/47‑1 (MQ=255) aTCCGTGATGTTATTACTACCTTCAGGCAACAACATATCCAAAGTGAAATGttt > 1:5087666/1‑54 (MQ=255) aTCCGTGATGTTATTACTACCTTCAGGCAACAACATATCCAAAGTGAAATGTTTTTCTTTTGTCGTAATg < 1:4507534/70‑1 (MQ=255) tCCGTGATGTTATTACTACCTTCAGGCAACAACATATCCAAAGTGAAATGTTTTTCtt < 1:2931791/58‑1 (MQ=255) ccGTGATGTTATTACTACCTTCAGGCAACAACATATCCAAAGTGAAATGttt > 1:90893/1‑52 (MQ=255) cGTGATGTTATTACTACCTTCAGGCAACAACATATCCAAAGTGAAATGTTTTTCtttt > 1:3306653/1‑58 (MQ=255) cGTGATGTTATTACTACCTTCAGGCAACAACATATCCAAAGTGAAATGTTTTTCTTTTGTCGTAATGACa > 1:3676562/1‑70 (MQ=255) cGTGATGTTATTACTACCTTCAGGCAACAACATATCCAAAGTGAAATGTTTTTCTTTTGTCGTAATGACa < 1:733081/70‑1 (MQ=255) cGTGATGTTATTACTACCTTCAGGCAACAACATATCCAAAGTGAAATGTTTTTCTTTTGTCGTAATGACa > 1:3100694/1‑70 (MQ=255) gTGATGTTATTACTACCTTCAGGCAACAACATATCCAAAGTGAAATGTTTTTCTTTTGTCGTAATGACaaa < 1:307851/71‑1 (MQ=255) tGATGTTATTACTACCTTCAGGCAACAACATATCCAAAGTGAAATGttttt > 1:4128582/1‑51 (MQ=255) tGATGTTATTACTACCTTCAGGCAACAACATATCCAAAGTGAAATGTTTTTCTTTTGTCg < 1:2308954/60‑1 (MQ=255) gATGTTATTACTACCTTCAGGCAACAACATATCCAAAGTGAAATGTTTTTCTTTTGTCGTAATGACaaaa > 1:3989304/1‑70 (MQ=255) gATGTTATTACTACCTTCAGGCAACAACATATCCAAAGTGAAATGTTTTTCTTTTGTCGTAATGACaaaa > 1:3646860/1‑70 (MQ=255) gATGTTATTACTACCTTCAGGCAACAACATATCCAAAGTGAAATGTTTTTCTTTTGTCGTAATGACAAAAt > 1:595015/1‑71 (MQ=255) ATGTTATTACTACCTTCAGGCAACAACATATCCAAAGTGAAATGTTTTTCTTTTGTCGTaa < 1:1893602‑M1/61‑1 (MQ=255) | GTTTCTATGAAAATAGCGTTTATCGGCGAAGCTGTTTCTGGATTTGGCGGCATGGAAACTGTCATCCGTGATGTTATTACTACCTTCAGGCAACAACATATCCAAAGTGAAATGTTTTTCTTTTGTCGTAATGACAAAAT > W3110S.gb/3836274‑3836413 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |