| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 3836344 = | 79 (1.400) | 4 (0.080) | 3/92 | NT | 5.6% | coding (95/1110 nt) | rfaB | UDP‑D‑galactose:(glucosyl)lipopolysaccharide‑1, 6‑D‑galactosyltransferase |
| ? | W3110S.gb | 3836373 = | 64 (1.260) | coding (124/1110 nt) | rfaB | UDP‑D‑galactose:(glucosyl)lipopolysaccharide‑1, 6‑D‑galactosyltransferase | |||||
Only 100 of 111 total aligned reads displayed.
AGCTGTTTCTGGATTTGGCGGCATGGAAACTGTCATCCGTGATGTTATTACTACCTTCAGGCAACAACATATCCAAAGTGAAATGTTTTTCTTTTGTCGTAATGACAAAATGGATAAGGGATGGCTGGAAGGTATTA > W3110S.gb/3836303‑3836439 | aGCTGTTTCTGGATTTGGCGGCATGGAAACTGTCATCCGTGATGTTATTACTACCTTCAGGCAACAACata < 1:5113076/71‑1 (MQ=255) tgtcattacgacaaaagaaaaacatttcactttggatATGTTATTACTACCTTCAGGCAACAACATATcc < 1:4095011‑M1/33‑1 (MQ=255) tttCTGGATTTTGCGGCATGGAAACTGTCATCCGTGATGTTATTACTACCTTCAGGCAACAACATATCCa < 1:705656/70‑1 (MQ=255) tttCTGGATTTGGCGGCATGGAAACTGTCATCCGTGATGTTATTACTACCTTCAGGCAACAACATATCCa > 1:2479494/1‑70 (MQ=255) tttCTGGATTTGGCGGCATGGAAACTGTCATCCGTGATGTTATTACTACCTTCAGGCAACAACATATCCa > 1:879033/1‑70 (MQ=255) tttCTGGATTTGGCGGCATGGAAACTGTCATCCGTGATGTTATTACTACCTTCAGGCAACAACATATCCa < 1:3835513/70‑1 (MQ=255) ggATTTGGCGGCATGGAAACTGTCATCCGTGATGTTATTACTACCTTCAGGCAACAACATATCCAAAGTg > 1:3730041/1‑70 (MQ=255) aTTTGGCGGCATGGAAACTGTCATCCGTGATGTTATTACTACCTTCAGGCAACAACATATCCAAAGTGaa > 1:327391/1‑70 (MQ=255) ttGGCGGCATGGAAACTGTCATCCGTGATGTTATTACTACCTTCAGGCAACAACATATCCAAAGTGAAATg > 1:3061114/1‑71 (MQ=255) ggcggcATGGAAACTGTCATCCGTGATGTTATTACTACCTTCAGGCAACAACATATCCAAAGTGAAATGtt > 1:69145/1‑71 (MQ=255) ggcATGGAAACTGTCATCCGTGATGTTATTACTACCTTCAGGCAACAACATATCCAAAGTGAAATGttttt > 1:366115/1‑71 (MQ=255) cATGGAAACTGTCATCCGTGATGTTATTACTACCTTCAGGCAACAACATATCCAAAGTGAAATGTTTTTCt > 1:2786425/1‑71 (MQ=255) tGGAAACTGTCATCCGTGATTTTATTACTACCTTCAGGCAACAACATATCCAAAGTGAAATGTTTTTc < 1:3581357/68‑1 (MQ=255) tGGAAACTGTCATCCGTGATGTTATTACTACCTTCAGGCAACAACATATCCAAAGTGaa < 1:1359097/59‑1 (MQ=255) ggAAACTGTCATCCGTGATGTTATTACTACCTTCAGGCAACAACATATCCAAAGTGAAATGTTTTTCtttt > 1:1275280/1‑71 (MQ=255) gAAACTGTCATCCGTGGTGTTATTACTACCTTCAGGCAACAACATATCCAAAGTGAAATGTTTTTCTTTTg > 1:925160/1‑71 (MQ=255) gAAACTGTCATCCGTGATGTTATTACTACCTTCAGGCAACAACATATCCAAAGTGa < 1:2214558/56‑1 (MQ=255) gAAACTGTCATCCGTGATGTTATTACTACCTTCAGGCAACAACATATCCAAAGTGAAATGTTTTTCTTTTg > 1:498515/1‑71 (MQ=255) aaaCTGTCATCCGTGATGTTATTACTACCTTCAGGCAACAACATATCCAAAGTGAAATGTTTTTCtt < 1:4040967/67‑1 (MQ=255) aaCTGTAATCCGTGATGTTATTACTACCTTCAGGCAACAACATATCCAAAGTGAAATGTTTTTCTTTTGTc > 1:620/1‑71 (MQ=255) aCTGTCATCCGTGATGTTATTACTACCTTCAGGCAACAACATATCCAAAGTGAAATGTTTTTCTTTTGTCg > 1:1440602/1‑71 (MQ=255) cTGTCATCCGTGATGTTATTACTACCTTCAGGCAACAACATATCCAAAGTGAAATGTTTTTCTTTTGTCGt < 1:188628/71‑1 (MQ=255) tGTCATCCGTGATGTTATTACTACCTTCAGGCAACAACATATCCAAAGTGAAATGTTTTTCTTTTGTCg > 1:39445/1‑69 (MQ=255) gTCATCCGTGATGTTATTACTACCTTCAGGCAACAACATATCCa < 1:4015112/44‑1 (MQ=255) gTCATCCGTGATGTTATTACTACCTTCAGGCAACAACATATCCa < 1:3470917/44‑1 (MQ=255) tCATCCGTGATGTTATTACTACCTTCAGGCAACAACATATCCAAAGTGAAATGTTTTTCTTTTGTCGTa < 1:632042/69‑1 (MQ=255) cATCCGTGATGTTATTACTACCTTCAGGCAACAACATATCCAAAGTGaaa > 1:5065051/1‑50 (MQ=255) cATCCGTGATGTTATTACTACCTTCAGGCAACAACATATACAAAGTGaaa > 1:1544577/1‑50 (MQ=255) aTCCGTGATGTTATTACTACCTTCAGGCAACAACATATCCAAAGTGa < 1:916301/47‑1 (MQ=255) aTCCGTGATGTTATTACTACCTTCAGGCAACAACATATCCAAAGTGAAATg > 1:4287245/1‑51 (MQ=255) aTCCGTGATGTTATTACTACCTTCAGGCAACAACATATCCAAAGTGAAATGttt > 1:5087666/1‑54 (MQ=255) aTCCGTGATGTTATTACTACCTTCAGGCAACAACATATCCAAAGTGAAATGTTTTTCTTTTGTCGTAATg < 1:4507534/70‑1 (MQ=255) tCCGTGATGTTATTACTACCTTCAGGCAACAACATATCCAAAGTGAAATGTTTTTCtt < 1:2931791/58‑1 (MQ=255) ccGTGATGTTATTACTACCTTCAGGCAACAACATATCCAAAGTGAAATGttt > 1:90893/1‑52 (MQ=255) ggatatgttgttgcctgaaggtagtaataacatATCCAAAGTGAAATGTTTTTCTTTTGTCGTAATGACa < 1:4095011‑M2/37‑1 (MQ=255) cGTGATGTTATTACTACCTTCAGGCAACAACATATCCAAAGTGAAATGTTTTTCtttt > 1:3306653/1‑58 (MQ=255) cGTGATGTTATTACTACCTTCAGGCAACAACATATCCAAAGTGAAATGTTTTTCTTTTGTCGTAATGACa > 1:4734752/1‑70 (MQ=255) cGTGATGTTATTACTACCTTCAGGCAACAACATATCCAAAGTGAAATGTTTTTCTTTTGTCGTAATGACa > 1:3676562/1‑70 (MQ=255) cGTGATGTTATTACTACCTTCAGGCAACAACATATCCAAAGTGAAATGTTTTTCTTTTGTCGTAATGACa > 1:3100694/1‑70 (MQ=255) cGTGATGTTATTACTACCTTCAGGCAACAACATATCCAAAGTGAAATGTTTTTCTTTTGTCGTAATGACa < 1:733081/70‑1 (MQ=255) gTGATGTTATTACTACCTTCAGGCAACAACATATCCAAAGTGAAATGTTTTTCTTTTGTCGTAATGACaaa < 1:307851/71‑1 (MQ=255) tGATGTTATTACTACCTTCAGGCAACAACATATCCAAAGTGAAATGttttt > 1:4128582/1‑51 (MQ=255) tGATGTTATTACTACCTTCAGGCAACAACATATCCAAAGTGAAATGTTTTTCTTTTGTCg < 1:2308954/60‑1 (MQ=255) gATGTTATTACTACCTTCAGGCAACAACATATCCAAAGTGAAATGTTTTTCTTTTGTCGTAATGACaaaa > 1:3989304/1‑70 (MQ=255) gATGTTATTACTACCTTCAGGCAACAACATATCCAAAGTGAAATGTTTTTCTTTTGTCGTAATGACaaaa > 1:3646860/1‑70 (MQ=255) gATGTTATTACTACCTTCAGGCAACAACATATCCAAAGTGAAATGTTTTTCTTTTGTCGTAATGACAAAAt > 1:595015/1‑71 (MQ=255) ATGTTATTACTACCTTCAGGCAACAACATATCCAAAGTGAAATGTTTTTCTTTTGTCGTaa < 1:1893602‑M1/61‑1 (MQ=255) TTATTACTACCTTCAGGCAACAACATATCCAAAGTGAAATGTTTTTCTTTTGTCGTAATGACAAAATGGa < 1:4878437‑M1/70‑1 (MQ=255) TTATTACTACCTTCAGGCAACAACATATCCAAAGTGAAATGTTTTTCTTTTGTCGTAATGACAAAATGGAt > 1:1101379‑M1/1‑71 (MQ=255) TATTACTACCTTCAGGCAACAACATATCCAAAGTGAAATGTTTTTCTTTTGTCGTAATGACAAAAt > 1:332619‑M1/1‑66 (MQ=255) TATTACTACCTTCAGGCAACAACATATCCAAAGTGAAATGTTTTTCTTTTGTCGTAATGACAAAATGGAt < 1:471500‑M1/70‑1 (MQ=255) TATTACTACCTTCAGGCAACAACATATCCAAAGTGAAATGTTTTTCTTTTGTCGTAATGACAAAATGGAt < 1:4989167‑M1/70‑1 (MQ=255) attaCTACCTTCAGGCAACAACATATCCAAAGTGaaa > 1:1887472/1‑37 (MQ=255) attaCTACCTTCAGGCAACAACATATCCAAAGTGAAATGTTTTTCTTTTGTCGTAATGACAAAATGGAt > 1:3961900/1‑69 (MQ=255) attaCTACCTTCAGGCAACAACATATCCAAAGTGAAATGTTTTTCTTTTGTCGTAATGACAAAATGGAt > 1:4572128/1‑69 (MQ=255) ttaCTACCTTCAGGCAACAACATATCCAAAGTGAAATGTTTTTCTTTTGTCGTAATGACAAAATGGATaa < 1:4652148/70‑1 (MQ=255) gcctgaaggtagtaataacatATCCAAAGTGAAATGt < 1:222186‑M2/16‑1 (MQ=255) gcctgaaggtagtaataacatATCCAAAGTGAAATGt < 1:712733‑M2/16‑1 (MQ=255) gcctgaaggtagtaataacatATCCAAAGTGAAATGTTTTTCttt > 1:4635366‑M2/22‑45 (MQ=255) actacCTTCAGGCAACAACATATCCAAAGTGAAATGTTTTTCTTTTGTCGTAATGACAAAATGGATAAgg > 1:302434/1‑70 (MQ=255) ctacCTTCAGGCAACAACATATCCAAAGTGAAATGTTTTTCTTTTGTCGTAATGACAAAATGGATAAggg < 1:1799384/70‑1 (MQ=255) tacCTTCAGGCAACAACATATCCAAAGTGAAATGttt < 1:1337330/37‑1 (MQ=255) tacCTTCAGGCAACAACATATCCAAAGTGAAATGTTTTTCTTTTGTCGTAAt < 1:4439733/52‑1 (MQ=255) acCTTCAGGCAACAACATATCCAAAGTGAAATGTTTTTCTTTTGTCGTAATGACa > 1:10495/1‑55 (MQ=255) ccTTCAGGCAACAACATATCCAAAGTGAAATGTTTTTCTTTTGTCGTAAt > 1:587606/1‑50 (MQ=255) ccTTCAGGCAACAACATATCCAAAGTGAAATGTTTTTCTTTTGTCGTAATGACAAAATGGATAAGGGAt < 1:4635969/69‑1 (MQ=255) ccTTCAGGCAACAACATATCCAAAGTGAAATGTTTTTCTTTTGTCGTAATGACAAAATGGATAAGGGATg < 1:4696708/70‑1 (MQ=255) cTTCAGGCAACAACATATCCAAAGTGAAATGTTTTTCTTTTGTCGTAATGACaa < 1:1610485/54‑1 (MQ=255) ttCAGGCAACAACATATCCAAAGTGAAATGTTTTTCTTTTGTCGTAATGACAAAATgg < 1:4019185/58‑1 (MQ=255) ttCAGGCAACAACATATCCAAAGTGAAATGTTTTTCTTTTGTCGTAATGACAAAATgg < 1:2536188/58‑1 (MQ=255) tCATGCAAAAAAATATACAAAGTGAAATGTTTTTATTTTGTCGTAAt < 1:3076885/47‑1 (MQ=25) tCAGGCAACAACATATCCAAAGTGAAATGTTTTTCTTTTg > 1:2993671/1‑40 (MQ=255) tCAGGCAACAACATATCCAAAGTGAAATGTTTTTCTTTTGTCg < 1:487248/43‑1 (MQ=255) tCAGGCAACAACATATCCAAAGTGAAATGTTTTTCTTTTGTCGTAATGACaaaa > 1:4069827/1‑54 (MQ=255) tCAGGCAACAACATATCCAAAGTGAAATGTTTTTCTTTTGTCGTAATGACAAAATGGATAAggg < 1:4994923/64‑1 (MQ=255) tCAGGCAACAACATATCCAAAGTGAAATGTTTTTCTTTTGTCGTAATGACAAAATGGATAAGGGATGGCTg > 1:163371/1‑71 (MQ=255) cAGGCAACAACATATCCAAAGTGAAATGTTTTTCTTTTGTCGTAATGACAAAATGGATAAGGGATGGCTg > 1:2890320/1‑70 (MQ=255) aGGCAACAACATATCCAAAGTGAAATGTTTTTCTTTTGTCGTAATGACAAAATGGATAAGGGATGGCTgg > 1:3417725/1‑70 (MQ=255) aGGCAACAACATATCCAAAGTGAAATGTTTTTCTTTTGTCGTAATGACAAAATGGATAAGGGATGGCTgg < 1:1469256/70‑1 (MQ=255) ggCAACAACATATCCAAAGTGAAATGTTTTTCTTTTGTCGTAATGACa < 1:3374572/48‑1 (MQ=255) gCAACAACATATCCAAAGTGAAATGTTTTTCTTTTg < 1:2720835/36‑1 (MQ=255) gCAACAACATATCCAAAGTGAAATGTTTTTCTTTTGTCGTa > 1:1948287/1‑41 (MQ=255) caacaaCATATCCAAAGTGAAATGTTTTTCTTTTGTCGTAATGACaaa < 1:242410/48‑1 (MQ=255) aacaacATATCCAAAGTGAAATGTTTTTCTTTTGTCGTAATGACAAAATGGATAAGGGATGGCTGGaa > 1:2716805/1‑68 (MQ=255) aacaacATATCCAAAGTGAAATGTTTTTCTTTTGTCGTAATGACAAAATGGATAAGGGATGGCTGGAAGGt < 1:4929918/71‑1 (MQ=255) acaacaTATCCAAAGTGAAATGTTTTTCTTTTGTCGTa < 1:1348409/38‑1 (MQ=255) acaacaTATCCAAAGTGAAATGTTTTTCTTTTGTCGTAATGACAAAATGGATaa < 1:339423/54‑1 (MQ=255) caacaTATCCAAAGTGAAATGTTTTTCTTTTGTCGTAATGACAAAATg > 1:226016/1‑48 (MQ=255) caacaTATCCAAAGTGAAATGTTTTTCTTTTGTCGTAATGACAAAATGGATAAGGGATGGCTGGAAGGTAt > 1:2365362/1‑71 (MQ=255) caacaTATCCAAAGTGAAATGTTTTTCTTTTGTCGTAATGACAAAATGGATAAGGGATGGCTGGAAGGTAt > 1:1101581/1‑71 (MQ=255) aacatATCCAAAGTGAAATGTTTTTCTTTTGTCGTAATGACAAAATGGATAAgg > 1:4710984‑M2/6‑54 (MQ=255) aacatATCCAAAGTGAAATGTTTTTCTTTTGTCGTAATGACAAAATGGATAAGGGATGGCTGGAAGGTAtt < 1:1140275‑M2/66‑1 (MQ=255) aacatATCCAAAGTGAAATGTTTTTCTTTTGTCGTAATGACAAAATGGATAAGGGATGGCTGGAAGGTAtt < 1:143185‑M2/66‑1 (MQ=255) acatATCCAAAGTGAAATGTTTTTCTTTTGTCGTaa > 1:3056480‑M2/5‑36 (MQ=255) acatATCCAAAGTGAAATGTTTTTCTTTTGTCGTAATGACAAAATGGATAAGGGATGGCTGGAAGGTAtt > 1:2748517‑M2/5‑70 (MQ=255) acatATCCAAAGTGAAATGTTTTTCTTTTGTCGTAATGACAAAATGGATAAGGGATGGCTGGAAGGTATTa < 1:4943948‑M2/67‑1 (MQ=255) catATCCAAAGTGAAATGTTTTTCTTTTGTCGTAATGACaaaa > 1:3293125‑M2/4‑43 (MQ=255) catATCCAAAGTGAAATGTTTTTCTTTTGTCGTAATGACAAAATGGATaa < 1:2049369‑M2/47‑1 (MQ=255) catATCCAAAGTGAAATGTTTTTCTTTTGTCGTAATGACAAAATGGATAAGGGATGGCTGGaa > 1:277007‑M2/4‑63 (MQ=255) catATCCAAAATGAAATGTTTTTCTTTTGTCGTAATGACAAAATGGATaa < 1:344699‑M2/47‑1 (MQ=255) | AGCTGTTTCTGGATTTGGCGGCATGGAAACTGTCATCCGTGATGTTATTACTACCTTCAGGCAACAACATATCCAAAGTGAAATGTTTTTCTTTTGTCGTAATGACAAAATGGATAAGGGATGGCTGGAAGGTATTA > W3110S.gb/3836303‑3836439 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |