| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 4434710 = | 51 (0.910) | 3 (0.060) | 3/90 | NT | 6.8% | coding (165/1413 nt) | cycA | D‑alanine/D‑serine/glycine transporter |
| ? | W3110S.gb | 4434732 = | 37 (0.750) | coding (187/1413 nt) | cycA | D‑alanine/D‑serine/glycine transporter | |||||
CCATTGGCGGTGCCATTGGTACGGGGTTGTTTATGGGGTCTGGCAAAACGATTAGCCTTGCCGGGCCGTCGATCATTTTCGTTTATATGATCATTGGTTTTATGCTCTTTTTCGTGATGCGGGCAATGGGGGAATTGCTG > W3110S.gb/4434640‑4434779 | atttgtattccagattcgaaagcagcaattcccccattgcccgcatcacgaaaaagagcataaaaccaatg > 1:4194090‑M1/71‑71 (MQ=255) tttgtattccagattcgaaagcagcaattcccccattgcccgcatcacgaaaaagagcataaaaccaatg > 1:4310908‑M1/70‑70 (MQ=255) cATTGGCGGTGCCATTGGTACGGGGTTGTTTATGGGGTCTGGCAAAACGATTAGCCTTGCCGGGCCGTCGa < 1:3972916/71‑1 (MQ=255) cATTGGCGGTGCCATTGGTACGGGGTTGTTTATGGGGTCTGGCAAAACGATTAGCCTTGCCGGGCCGTCGa > 1:4973644/1‑71 (MQ=255) aTTGGCGGTGCCATTGGTACGGGGTTGTTTATGGGGTCTGGCAAAACGATTAGCCTTGCCGGGCCGTCGAt < 1:1031272/71‑1 (MQ=255) ttGGCGGTGCCATTGGTACGGGGTTGTTTATGGGGTCTGGCAAAACGATTAGCCTTGCCGGGCCGTCGa > 1:4378419/1‑69 (MQ=255) tGGCGGTGCCATTAGTACGGGGTTGTTTATGGGGTCTGGCAAAACGATTAGCCTTGCCGGGCCGTCGATCa > 1:3027655/1‑71 (MQ=255) gtattccagattcgaaagcagcaattcccccattgcccgcatcacgaaaaagagcataaaaccaatGATc < 1:675793‑M1/4‑1 (MQ=255) gCGGTGCCATTGGTACGGGGTTGTTTATGGGGTCTGGCAAAACGATTAGCCTTGCCGGGCCGTCGATCAtt < 1:3624431/71‑1 (MQ=255) ggTGCCATTGGTACGGGGTTGTTTATGGGGTCTGGCAAAACGATTAGCCTTGCCGGGCCGTCGATCAtttt > 1:3985572/1‑71 (MQ=255) tGCCATTGGTACGGGGTTGTTTATGGGGTCTGGCAAAACGATTAGCCTTGCCGGGCCGTCGATCATTTTCg < 1:5010119/71‑1 (MQ=255) cagattcgaaagcagcaattcccccattgcccgcatcacgaaaaagagcataaaaccaatGATc > 1:2164379‑M1/61‑64 (MQ=255) ccATTGGTACGGGGTTGTTTATGGGGTCTGGCAAAACGATTAGCCTTGCCGGGCCGTCGATCAttt < 1:2134249/66‑1 (MQ=255) ccATTGGTACGGGGTTGTTTATGGGGTCTGGCAAAACGATTAGCCTTGCCGGGCCGTCGATCATTTTCGt < 1:4191871/70‑1 (MQ=255) cATTGGTACGGGGTTGTTTATGGGGTCTGGCAAAACGATTAGCCTTGCCGGGCCGTCGATCATTTTCGttt < 1:2535570/71‑1 (MQ=255) ttcgaaagcagcaattcccccattgcccgcatcacgaaaaagagcataaaaccaatGATCa < 1:323162‑M1/5‑1 (MQ=255) aTTGGTACGGGGTTGTTTATGGGGTCTGGCAAAACGATTAGCCTTGCCGGGCCGTCGATc < 1:3597785/60‑1 (MQ=255) aTTGGTACGGGGTTGTTTATGGGGTCTGGCAAAACGATTAGCCTTGCCGGGCCGTCGATCATTTTCGt > 1:3251591/1‑68 (MQ=255) aTTGGTACGGGGTTGTTTATGGGGTCTGGCAAAACGATTAGCCTTGCCGGGCCGTCGATCATTTTCGTTta < 1:3608132/71‑1 (MQ=255) ttGGTACGGGGTTGTTTATGGGGTCTGGCAAAACGATTAGCCTTGCCGGGCCGTCGATCATTTTCGTTtat < 1:926604/71‑1 (MQ=255) tGGTACGGGGTTGTTTATGGAGTCTGGCAAAACGATTAGCCTTGCCGGGCCGTCGATCATTTTCGTTtata > 1:1112128/1‑71 (MQ=255) ggTACGGGGTTGTTTATGGGGTCTGGCAAAACGATTAGCCTTGCCGGGCCGTCGATCATTTTCGTTtata < 1:3510862/70‑1 (MQ=255) gTACGGGGTTGTTTATGGGGTCTGGCAAAACGATTAGCCTTGCCGGGCCGTCGATCATTTTCGTTTatat < 1:3166376/70‑1 (MQ=255) gTACGGGGTTGTTTATGGGGTCTGGCAAAACGATTAGCCTTGCCGGGCCGTCGATCATTTTCGTTTATATg < 1:83955/71‑1 (MQ=255) aaagcagcaattcccccattgcccgcatcacgaaaaagagcataaaaccaatGa > 1:3236937‑M1/53‑54 (MQ=255) tACGGGGTTGTTTATGGGGTCTGGCAAAACGATTAGCCTTGCCGGGCCGTCGATCa < 1:2430444/56‑1 (MQ=255) tACGGGGTTGTTTATGGGGTCTGGCAAAACGATTAGCCTTGCCGGGCCGTCGATCa < 1:1941560/56‑1 (MQ=255) agcagcaattcccccattgcccgcatcacgaaaaagagcataaaaccaatGa > 1:737032‑M1/51‑52 (MQ=255) cGGGGTTGTTTATGGGGTCTGGCAAAACGATTAGCCTTGCCGGGCCGTCGATCAtt > 1:141025/1‑56 (MQ=255) cGGGGTTGTTTATGGGGTCTGGCAAAACGATTAGCCTTGCCGGGCCGTCGATCATTTTCGTTTATATGAt > 1:4559188/1‑70 (MQ=255) cGGGGTTGTTTATGGGGTCTGGCAAAACGATTAGCCTTGACGGGCCGTCGATCATTTTCGTTtat > 1:698694/1‑65 (MQ=255) ggggTTGTTTATGGGGTCTGGCAAAACGATTAGCCTTGCCGGGCCGTCGATCAt < 1:2082580/54‑1 (MQ=255) ggggTTGTTTATGGGGTCTGGCAAAACGATTAGCCTTGCCGGGCCGTCGATCATTTTCGTTTATATGATCa < 1:4371130/71‑1 (MQ=255) gggTTGTTTATGGGGTCTGGCAAAACGATTAGCCTTGCCGGGCCGTCGATCATTTTCGTTTATATGATCAt < 1:4860161/71‑1 (MQ=255) gttgttTATGGGGTCTGGCAAAACGATTAGCCTTGCCGGGCCGTCGATCATTTTCGTTTATATGATCATTg < 1:2411474/71‑1 (MQ=255) caattcccccattgcccgcatcacgaaaaagagcataaaaccaatg < 1:1828949‑M1/1‑1 (MQ=255) caattcccccattgcccgcatcacgaaaaagagcataaaaccaatGATCATTTTCGTTTatat < 1:352861‑M1/18‑1 (MQ=255) tttATGGGGTCTGGCAAAACGATTAGCCTTGCCGGGCCGTCGATCATTTTCGTTTATATGATCATTGGtt < 1:2966373/70‑1 (MQ=255) aTGGGGTCTGGCAAAACGATTAGCCTTGCCGGGCCGTCGATCATTTTCGTTTATATGATCATTGGTTTTa < 1:2751745/70‑1 (MQ=255) tGGGGTCTGGCAAAACGATTAGCCTTGCCGGGCCGTCGATCATTTTCGTTTATATGATCATTGGTTTTAt > 1:4749386/1‑70 (MQ=255) ccattgcccgcatcacgaaaaagagcataaaaccaatGATCATTTTCGTTTATATGATCAt < 1:5122202‑M1/24‑1 (MQ=255) gggTCTGGCAAAACGATTAGCCTTGCCGGGCCGTCGATCATTTTCGTTTATATGATCATTGGTTTTATGc > 1:2652226/1‑70 (MQ=255) attgcccgcatcacgaaaaagagcataaaaccaatGATc > 1:2676174‑M1/36‑39 (MQ=255) gcccgcatcacgaaaaagagcataaaaccaatGAt < 1:1434625‑M1/3‑1 (MQ=255) ggCAAAACGATTAGCCTTGCCGGGCCGTCGATCATTTTCGTTta < 1:338364/44‑1 (MQ=255) gCAAAACGATTAGCCTTGCCGGGCCGTCGATCATTTTCGt > 1:4780480/1‑40 (MQ=255) gCAAAACGATTAGCCTTGCCGGGCCGTCGATCATTTTCGTTTATATGATCATTGGTTTTATGCTCttttt > 1:3742442/1‑70 (MQ=255) gCAAAACGATTAGCCTTGCCGGGCCGTCGATCATTTTCGTTTATATGATCATTGGTTTTATGCTCttt < 1:1950750/68‑1 (MQ=255) cAAAACGATTAGCCTTGCCGGGCCGTCGATCATTTTCGTTTATATGATCATTGGTTTTATGCTCTTTTTCg > 1:3303411/1‑71 (MQ=255) aaaaCGATTAGCCTTGCCGGGCCGTCGATCATTTTCGTTTATATg < 1:5151890/45‑1 (MQ=255) aaaaCGATTAGCCTTGCCGGGCCGTCGATCATTTTCGTTTATATGATCATTGGTTTTATg > 1:3151593/1‑60 (MQ=255) aaaCGATTAGCCTTGCCGGGCCGTCGATCATTTTCGTTtat < 1:3683171/41‑1 (MQ=255) aaaCGATTAGCCTTGCCGGGCCGTCGATCATTTTCGTTtat > 1:2636904/1‑41 (MQ=255) aaCGATTAGCCTTGCCGGGCCGTCGATCATTTTCGTTTATATGATCATTGGTTTTATGCTCTTTTTCGTGa > 1:1766316/1‑71 (MQ=255) aaCGATTAGCCTTGCCGGGCCGTCGATCATTTTCGTTTATATGATCATTGGTTTTATGCTCTTTTTCGTGa > 1:1921450/1‑71 (MQ=255) aaCGATTAGCCTTGCCGGGCCGTCGATCATTTTCGTTTATATGATCATTGGTTTTATGCTCTTTTTCGTGa < 1:3204041/71‑1 (MQ=255) aaCGATTAGCCTTGCCGGGCCGTCGATCATTTTCGTTTATATGATCATTGGTTTTATGCTCTTTTTCGTGa > 1:1944995/1‑71 (MQ=255) aCGATTAGCCTTGCCGGGCCGTCGATCATTTTCGTTtata > 1:1413589/1‑40 (MQ=255) aCGATTAGCCTTGCCGGGCCGTCGATCATTTTCGTTTATATGATCATTGGTTTTATGCTCTTTTTCGTGAt < 1:4717437/71‑1 (MQ=255) aCGATTAGCCTTGCCGGGCCGTCGATCATTTTCGTTTATATGATCATTGGTTTTATGCTATTTTTCGt > 1:2471177/1‑68 (MQ=255) cGATTAGCCTTGCCGGGCCGTCGATCATTTTCGTTTATATg > 1:833324/1‑41 (MQ=255) gATTAGCCTTGCCGGGCCGTCGATCATTTTCGTTTATATGATCATTGGTTTTATGCTCTTTTTCGTGATGc < 1:2779674/71‑1 (MQ=255) gATTAGCCTTGCCGGGCCGTCGATCATTTTCGTTTATATGATCATTGGTTTTATGCTCTTTTTCGTGATGc > 1:3182254/1‑71 (MQ=255) aTTAGCCTTGCCGGGCCGTCGATCATTTTCGTTTATATGATCATTGGTTTTATGCTCTTTTTCGTGATGCg < 1:3666574/71‑1 (MQ=255) aaagagcataaaaccaatGATCATTTTCGTTTATATGa < 1:3368480‑M1/20‑1 (MQ=255) ccTTGCCGGGCCGTCGATCATTTTCGTTTATATGATCATTGGTTTTATGCTCTTTTTCGTGATGCGGGCaa < 1:449531/71‑1 (MQ=255) ttGCCGGGCCGTCGATCATTTTCGTTTATATGATCATTGGTTTTATGCTCTTTTTCGTGATGCGTGCAATg > 1:2765383/1‑71 (MQ=255) tGCCGGGCCGTCGATCATTTTCGTTTATATGATCATTGGTTTTATGCTCTTTTTCGTGATGCGGGCAATgg > 1:4531373/1‑71 (MQ=255) tGCCGGGCCGTCGATCATTTTCGTTTATATGATCATTGGTTTTATGCTCTTTTTCGTGATGCGGGCAATgg > 1:2680610/1‑71 (MQ=255) ccGGGCCGTCGATCATTTTCGTTTATATGATCATTGGtttt < 1:349337/41‑1 (MQ=255) ggCCGTCGATCATTTTCGTTTATATGATCATTGGTTTTATGCTCTTTTTCGTGATGCGGGCAATGGGGGaa < 1:4085530/71‑1 (MQ=255) gCCGTCGATCATTTTCGTTTATATGATCATTGGTTTTATGCTCTTTTTCGTGATGCGGGCAATGGGGGAAt < 1:2784835/71‑1 (MQ=255) ccGTCGATCATTTTCGTTTATATGATCATTGGTTTTATGCTCTTTTTCGTGATGCGGGCAATGGGGGAAtt < 1:4181153/71‑1 (MQ=255) gTCGATCATTTTCGTTTATATGATCATTGGTTTTATGCTCTTTTTCGTGATGCGGGCAATGGGGGAATtg < 1:4540147/70‑1 (MQ=255) tCGATCATTTTCGTTTATATGATCATTGGTTTTATGCTCTTTTTCGTGATGCGGGCaa > 1:1732353/1‑58 (MQ=255) cGATCATTTTCGTTTATATGATCATTGGTTTTATGCTCTTTTTCGTGATGCGGGCaa > 1:3539541/1‑57 (MQ=255) cGATCATTTTCGTTTATATGATCATTGGTTTTATGCTCTTTTTCGTGATGCGGGCAATGGGGGAATtgctg > 1:1071408/1‑71 (MQ=255) GATCATTTTCGTTTATATGATCATTGGTTTTATGCTCTTTTTCGTg < 1:1543627‑M1/46‑1 (MQ=255) GATCATTTTCGTTTATATGATCATTGGTTTTATGCTCTTTTTCGTGa < 1:35486‑M1/47‑1 (MQ=255) GATCATTTTCGTTTATATGATCATTGGTTTTATGCTCTTTTTCGTGATGCg > 1:859990‑M1/1‑51 (MQ=255) GATCATTTTCGTTTATATGATCATTGGTTTTATGCTCTTTTTCGTGATGCGGGCAATGGGGGAATtg > 1:91899‑M1/1‑67 (MQ=255) | CCATTGGCGGTGCCATTGGTACGGGGTTGTTTATGGGGTCTGGCAAAACGATTAGCCTTGCCGGGCCGTCGATCATTTTCGTTTATATGATCATTGGTTTTATGCTCTTTTTCGTGATGCGGGCAATGGGGGAATTGCTG > W3110S.gb/4434640‑4434779 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |