| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 4434710 = | 51 (0.910) | 3 (0.060) | 3/90 | NT | 6.8% | coding (165/1413 nt) | cycA | D‑alanine/D‑serine/glycine transporter |
| ? | W3110S.gb | 4434732 = | 37 (0.750) | coding (187/1413 nt) | cycA | D‑alanine/D‑serine/glycine transporter | |||||
GGGGTTGTTTATGGGGTCTGGCAAAACGATTAGCCTTGCCGGGCCGTCGATCATTTTCGTTTATATGATCATTGGTTTTATGCTCTTTTTCGTGATGCGGGCAATGGGGGAATTGCTGCTTTCGAATCTGGAATACAAAT > W3110S.gb/4434662‑4434801 | ggggTTGTTTATGGGGTCTGGCAAAACGATTAGCCTTGCCGGGCCGTCGATCATTTTCGTTTATATGATCa < 1:4371130/71‑1 (MQ=255) gggTTGTTTATGGGGTCTGGCAAAACGATTAGCCTTGCCGGGCCGTCGATCATTTTCGTTTATATGATCAt < 1:4860161/71‑1 (MQ=255) gttgttTATGGGGTCTGGCAAAACGATTAGCCTTGCCGGGCCGTCGATCATTTTCGTTTATATGATCATTg < 1:2411474/71‑1 (MQ=255) tttATGGGGTCTGGCAAAACGATTAGCCTTGCCGGGCCGTCGATCATTTTCGTTTATATGATCATTGGtt < 1:2966373/70‑1 (MQ=255) aTGGGGTCTGGCAAAACGATTAGCCTTGCCGGGCCGTCGATCATTTTCGTTTATATGATCATTGGTTTTa < 1:2751745/70‑1 (MQ=255) tGGGGTCTGGCAAAACGATTAGCCTTGCCGGGCCGTCGATCATTTTCGTTTATATGATCATTGGTTTTAt > 1:4749386/1‑70 (MQ=255) ccattgcccgcatcacgaaaaagagcataaaaccaatGATCATTTTCGTTTATATGATCAt < 1:5122202‑M1/24‑1 (MQ=255) gggTCTGGCAAAACGATTAGCCTTGCCGGGCCGTCGATCATTTTCGTTTATATGATCATTGGTTTTATGc > 1:2652226/1‑70 (MQ=255) gCAAAACGATTAGCCTTGCCGGGCCGTCGATCATTTTCGTTTATATGATCATTGGTTTTATGCTCttttt > 1:3742442/1‑70 (MQ=255) gCAAAACGATTAGCCTTGCCGGGCCGTCGATCATTTTCGTTTATATGATCATTGGTTTTATGCTCttt < 1:1950750/68‑1 (MQ=255) cAAAACGATTAGCCTTGCCGGGCCGTCGATCATTTTCGTTTATATGATCATTGGTTTTATGCTCTTTTTCg > 1:3303411/1‑71 (MQ=255) aaaaCGATTAGCCTTGCCGGGCCGTCGATCATTTTCGTTTATATGATCATTGGTTTTATg > 1:3151593/1‑60 (MQ=255) aaCGATTAGCCTTGCCGGGCCGTCGATCATTTTCGTTTATATGATCATTGGTTTTATGCTCTTTTTCGTGa > 1:1766316/1‑71 (MQ=255) aaCGATTAGCCTTGCCGGGCCGTCGATCATTTTCGTTTATATGATCATTGGTTTTATGCTCTTTTTCGTGa > 1:1921450/1‑71 (MQ=255) aaCGATTAGCCTTGCCGGGCCGTCGATCATTTTCGTTTATATGATCATTGGTTTTATGCTCTTTTTCGTGa > 1:1944995/1‑71 (MQ=255) aaCGATTAGCCTTGCCGGGCCGTCGATCATTTTCGTTTATATGATCATTGGTTTTATGCTCTTTTTCGTGa < 1:3204041/71‑1 (MQ=255) aCGATTAGCCTTGCCGGGCCGTCGATCATTTTCGTTTATATGATCATTGGTTTTATGCTCTTTTTCGTGAt < 1:4717437/71‑1 (MQ=255) aCGATTAGCCTTGCCGGGCCGTCGATCATTTTCGTTTATATGATCATTGGTTTTATGCTATTTTTCGt > 1:2471177/1‑68 (MQ=255) gATTAGCCTTGCCGGGCCGTCGATCATTTTCGTTTATATGATCATTGGTTTTATGCTCTTTTTCGTGATGc < 1:2779674/71‑1 (MQ=255) gATTAGCCTTGCCGGGCCGTCGATCATTTTCGTTTATATGATCATTGGTTTTATGCTCTTTTTCGTGATGc > 1:3182254/1‑71 (MQ=255) aTTAGCCTTGCCGGGCCGTCGATCATTTTCGTTTATATGATCATTGGTTTTATGCTCTTTTTCGTGATGCg < 1:3666574/71‑1 (MQ=255) ccTTGCCGGGCCGTCGATCATTTTCGTTTATATGATCATTGGTTTTATGCTCTTTTTCGTGATGCGGGCaa < 1:449531/71‑1 (MQ=255) ttGCCGGGCCGTCGATCATTTTCGTTTATATGATCATTGGTTTTATGCTCTTTTTCGTGATGCGTGCAATg > 1:2765383/1‑71 (MQ=255) tGCCGGGCCGTCGATCATTTTCGTTTATATGATCATTGGTTTTATGCTCTTTTTCGTGATGCGGGCAATgg > 1:2680610/1‑71 (MQ=255) tGCCGGGCCGTCGATCATTTTCGTTTATATGATCATTGGTTTTATGCTCTTTTTCGTGATGCGGGCAATgg > 1:4531373/1‑71 (MQ=255) ccGGGCCGTCGATCATTTTCGTTTATATGATCATTGGtttt < 1:349337/41‑1 (MQ=255) ggCCGTCGATCATTTTCGTTTATATGATCATTGGTTTTATGCTCTTTTTCGTGATGCGGGCAATGGGGGaa < 1:4085530/71‑1 (MQ=255) gCCGTCGATCATTTTCGTTTATATGATCATTGGTTTTATGCTCTTTTTCGTGATGCGGGCAATGGGGGAAt < 1:2784835/71‑1 (MQ=255) ccGTCGATCATTTTCGTTTATATGATCATTGGTTTTATGCTCTTTTTCGTGATGCGGGCAATGGGGGAAtt < 1:4181153/71‑1 (MQ=255) gTCGATCATTTTCGTTTATATGATCATTGGTTTTATGCTCTTTTTCGTGATGCGGGCAATGGGGGAATtg < 1:4540147/70‑1 (MQ=255) tCGATCATTTTCGTTTATATGATCATTGGTTTTATGCTCTTTTTCGTGATGCGGGCaa > 1:1732353/1‑58 (MQ=255) atgatcatataaacgaaaatgatcATTGGTTTTATGCTCTTTTTCGTGATGCGGGCAATgg < 1:5122202‑M2/37‑1 (MQ=255) cGATCATTTTCGTTTATATGATCATTGGTTTTATGCTCTTTTTCGTGATGCGGGCaa > 1:3539541/1‑57 (MQ=255) cGATCATTTTCGTTTATATGATCATTGGTTTTATGCTCTTTTTCGTGATGCGGGCAATGGGGGAATtgctg > 1:1071408/1‑71 (MQ=255) GATCATTTTCGTTTATATGATCATTGGTTTTATGCTCTTTTTCGTg < 1:1543627‑M1/46‑1 (MQ=255) GATCATTTTCGTTTATATGATCATTGGTTTTATGCTCTTTTTCGTGa < 1:35486‑M1/47‑1 (MQ=255) GATCATTTTCGTTTATATGATCATTGGTTTTATGCTCTTTTTCGTGATGCg > 1:859990‑M1/1‑51 (MQ=255) GATCATTTTCGTTTATATGATCATTGGTTTTATGCTCTTTTTCGTGATGCGGGCAATGGGGGAATtg > 1:91899‑M1/1‑67 (MQ=255) ATCATTTTCGTTTATATGATCATTGGTTTTATGctct > 1:805904‑M1/1‑37 (MQ=255) ATCATTTTCGTTTATATGATCATTGGTTTTATGctct > 1:4482286‑M1/1‑37 (MQ=255) ATCATTTTCGTTTATATGATCATTGGTTTTATGct > 1:1728247‑M1/1‑35 (MQ=255) ATCATTTTCGTTTATATGATCATTGGTTTTATGCTCTTTTTCGTGATGCGGGCAATggggg > 1:4126895‑M1/1‑61 (MQ=255) ATCATTTTCGATTATATGATCATTGGTTTTATGCTCTTTTTCGTGATGCGGGCAATGGGGGAAtt > 1:1203262‑M1/1‑65 (MQ=255) tcatataaacgaaaatgatcATTGGTTTTATGCTCttt < 1:3368480‑M2/18‑1 (MQ=255) TCATTTTCGTTTATATGATCATTGGTTTTATGCTCTTTTTCGTGATGCggg < 1:4901626‑M1/51‑1 (MQ=255) TCATTTTCGTTTATATGATCATTGGTTTTATGCTCTTTTTCGTGATGCGGGc > 1:3120656‑M1/1‑52 (MQ=255) TCATTTTCGTTTATATGATCATTGGTTTTATGCTCTTTTTCGTGATGCGGGCAATggggg > 1:3564241‑M1/1‑60 (MQ=255) TCATTTTCGTTTATATGATCATTGGTTTTATGCTCTTTTTCGTGATGCGGGCAATGGGGGAATtg < 1:3105769‑M1/65‑1 (MQ=255) TCATTTTCGTTTATATGATCATTGGTTTTATGCTCTTTTTCGTGATGCGGGCAATGGGGGAATtg < 1:832472‑M1/65‑1 (MQ=255) TCATTTTCGTTTATATGATCATTGGTTTTATGCTCTTTTTCGTGATGCGGGCAATGGGGGAATTGCTGCtt < 1:2018882‑M1/71‑1 (MQ=255) TCATTTTCGTTTATATGATCATTGGTTTTATGCTCTTTTTCGTGATGCGGGCAATGGGGGAATTGCTGCtt < 1:4586623‑M1/71‑1 (MQ=255) CATTTTCGTTTATATGATCATTGGTTTTATGCTCTTTTTCGTGa < 1:38810‑M1/44‑1 (MQ=255) CATTTTCGTTTATATGATCATTGGTTTTATGCTCTTTTTCGTGa < 1:4532555‑M1/44‑1 (MQ=255) CATTTTCGTTTATATGATCATTGGTTTTATGCTCTTTTTCGTGATGCGGGCAATGGGGGAATTGCTGCttt < 1:4862516‑M1/71‑1 (MQ=255) atataaacgaaaatgatcATTGGTTTTATGCTCTTTTTCGTGATGCGGGCAATGGGGGAATtg < 1:352861‑M2/45‑1 (MQ=255) TTTTCGTTTATATGATCATTGGTTTTATGCTCTTTTTCGTGATGCGGGc > 1:5107976‑M1/1‑49 (MQ=255) ttCGTTTATATGATCATTGGTTTTATGCTCTTTTTCGTg > 1:77516/1‑39 (MQ=255) ttCGTTTATATGATCATTGGTTTTATGCTCTTTTTCGTGATGCGGGCAATGGGGGAATtgc > 1:347449/1‑61 (MQ=255) cGTTTATATGATCATTGGTTTTATGCTCTTTTTCGTGATGCGGGCAATgg > 1:646121/1‑50 (MQ=255) cGTTTATATGATCATTGGTTTTATGCTCTTTTTCGTGATGCGGGCAATgg > 1:1648348/1‑50 (MQ=255) cGTTTATATGATCATTGGTTTTATGCTCTTTTTCGTGATGCGGGCAATGGGGGAATTGCTGCTTTCGAAt < 1:4313924/70‑1 (MQ=255) gTTTATATTATCATTGGTTTTATGCTCTTTTTCGTGATGCGGGCAATggggg < 1:2895933/52‑1 (MQ=255) gTTTATATGATCATTTGTTTTATGCTCTTTTTCGTTATGCGGTCAATggggt < 1:4620457/52‑2 (MQ=37) gTTTATATGATCATTGGTTTTATGCTCTTTTTCGTGATGCGGGCAATggggg < 1:1019192/52‑1 (MQ=255) tataTGATCATTGGTTTTATGCTCTTTTTCGTGATGCGGGCAATgggg > 1:4674719/1‑48 (MQ=255) atatGATCATTGGTTTTATGCTCTTTTTCGTGATGCGGGCAATGGGGGAATTGCTGCTTTCGAATCTg < 1:5071256/68‑1 (MQ=255) tatGATCATTGGTTTTATGCTCTTTTTCGTGATGCGGGCAATGGGGGAATTGCTGCTTTCGAATCTGGaa > 1:4822935/1‑70 (MQ=255) tatGATCATTGGTTTTATGCTCTTTTTCGTGATGCGGGCAATGGGGGAATTGCTGCTTTCGAATCTGGAAt < 1:2310729/71‑1 (MQ=255) tgatcATTGGTTTTATGCTCTTTTTCGTGATGCGGGCAATGGGGGAATTGCTGCTTTCGaa < 1:323162‑M2/56‑1 (MQ=255) gatcATTGGTTTTATGCTCTTTTTCGTGATGCGGGCAAt > 1:2676174‑M2/5‑39 (MQ=255) gatcATTGGTTTTATGCTCTTTTTCGTGATGCGGGCAATGGGGGAATTGCTGCTTTCGAATCTg > 1:2164379‑M2/5‑64 (MQ=255) gatcATTGGTTTTATGCTCTTTTTCGTGATGCGGGCAATGGGGGAATTGCTGCTTTCGAATCTGGAATAc < 1:675793‑M2/66‑1 (MQ=255) atcATTGGTTTTATGCTCTTTTTCGTGATGCGGGc < 1:1434625‑M2/32‑1 (MQ=255) tcATTGGTTTTATGCTCTTTTTCGTGATGCGGGCAATGGGGGAATTgctgct > 1:737032‑M2/3‑52 (MQ=255) tcATTGGTTTTATGCTCTTTTTCGTGATGCGGGCAATGGGGGAATTGCTGCttt > 1:3236937‑M2/3‑54 (MQ=255) cATTGGTTTTATGCTCTTTTTCGTGATGCGGGCAATGGGGGAATtg < 1:1828949‑M2/45‑1 (MQ=255) cATTGGTTTTATGCTCTTTTTCGTGATGCGGGCAATGGGGGAATTGCTGCTTTCGAATCTGGAATACaaa > 1:4310908‑M2/2‑70 (MQ=255) cATTGGTTTTATGCTCTTTTTCGTGATGCGGGCAATGGGGGAATTGCTGCTTTCGAATCTGGAATACAAAt > 1:4194090‑M2/2‑71 (MQ=255) | GGGGTTGTTTATGGGGTCTGGCAAAACGATTAGCCTTGCCGGGCCGTCGATCATTTTCGTTTATATGATCATTGGTTTTATGCTCTTTTTCGTGATGCGGGCAATGGGGGAATTGCTGCTTTCGAATCTGGAATACAAAT > W3110S.gb/4434662‑4434801 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |