New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	W3110S.gb	2764844 =	65 (1.280)	4 (0.090)	3/92	NT	7.4%	coding (271/1074 nt)	yfjN	hypothetical protein
	?	W3110S.gb	2764882 =	41 (0.900)					coding (309/1074 nt)	yfjN	hypothetical protein

CAGGTAGAACGCTTGTCTCTACAAATCCTTGCAGTACCATATTTACCTGCTCAAATTCAGCAGGATTGATGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  W3110S.gb/2764916‑2764844 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atggtACTGCAAGGATTTGTAGAGACAAGCGTTCTACCTGTACTTGAGCTATCAGCAGATGAATCGCATATAG  >  W3110S.gb/2764882‑2764949                                                                                                                                               CAGGTAGAACGCTTGTCTCTACAAATCCTTGCAGTACCATATTTACCTGCTCAAATTCAGCAGGATTGAT                                                                         <  1:3542658/70‑1               GTCTCTACAAATCCTTGCAGTACCATATTTACCTGCTCAAATTCAGCAGGATTGATGGT                                                                      >  1:28382/1‑59                                              CCTGCTCAAATTCAGCAGGATTGATGGTACTGCAAGGATTTGTAGA                                                    >  1:1200549/1‑46                                              CCTGCTCAAATTCAGCAGGATTGATGGTACTGCAAGGATTTGTAGA                                                    >  1:1919252/1‑46                                                TGCTCAAATTCAGCAGGATTGATGGTACTGCAAGGATTTGTAGAGACAAGCGTTCTAC                                      <  1:3487541/58‑1                                                  CTCAAATTCAGCAGGATTGATGGTACTGCAAGGATTTGTAGAGACAAGCGTTCTACCT                                    >  1:3227770/1‑58                                                                     ATGGTACTGCAAGGATTTGTAGAGACAAGCGTTCTACCTGTACTTGAGCTATCAGCAGATGAATCGCATA     >  1:831842/1‑70                                                                      TGGTACTGCAAGGATTTGTAGAGACAAGCGTTCTACCTGTACTTGAGCTATCAGCAGATGAATCGCATATA   <  1:1582909/71‑1                                                                       GGTACTGCAAGGATTTGTAGAGACAAGCGTTCTACCTGTACTTGAGCTATCAGCAGATGAATCGCATA     >  1:2906703/1‑68                                                                       GGTACTGCAAGGATTTGTAGAGACAAGCGTTCTACCTGTACTTGAGCTATCAGCAGATGAATCGCATA     >  1:2912414/1‑68                                                                        GTACTGCAAGGATTTGTAGAGACAAGCGTTCTACCTGTACTTGAGCTATCAGCAGATGAATCGCATATAG  <  1:3379320/70‑1                                                                                                                                               CAGGTAGAACGCTTGTCTCTACAAATCCTTGCAGTACCATATTTACCTGCTCAAATTCAGCAGGATTGATGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  W3110S.gb/2764916‑2764844 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atggtACTGCAAGGATTTGTAGAGACAAGCGTTCTACCTGTACTTGAGCTATCAGCAGATGAATCGCATATAG  >  W3110S.gb/2764882‑2764949

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.