New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	W3110S.gb	= 3210949	43 (0.850)	4 (0.090)	3/90	NT	8.9%	coding (1187/1746 nt)	dnaG	DNA primase
	?	W3110S.gb	= 3210964	44 (0.980)					coding (1202/1746 nt)	dnaG	DNA primase

TCTGTTTAACAGTCTGATGCCGCAAGTTGATCTGAGTACCCCTGACGGGCGCGCACGTTTGAGTACGCTGGCACT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  W3110S.gb/3210875‑3210949 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcactTGCGATATCAATGGTAGTGCCAGCGTACTCAAACGTGCGCGCCCGTCAGGGGTACTCAGATCAACTTG  <  W3110S.gb/3210964‑3210897                                                                                                                                                 TCTGTTTAACAGTCTGATGCCGCAAGTTGATCTGAGTACCCCTGACGGGCGCGCACGTTTGAGTACGCTGG                                                                          >  1:1898119/1‑71  CTGTTTAACAGTCTGATGCCGCAAGTTGATCTGAGTACCCCTGACGGGCGCGCACGTTTGAGTACGCTGG                                                                          <  1:1650614/70‑1  CTGTTTAACAGTCTGATGCCGCAAGTTGATCTGAGTACCCCTGACGGGCGCGCACGTTTGAGTACGCTGG                                                                          <  1:334137/70‑1  CTGTTTAACAGTCTGATGCCGCAAGTTGATCTGAGTACCCCTGACGGGCGCGCACGTTTGAGTACGCTGG                                                                          <  1:938840/70‑1     TTTAACAGTCTGATGCCGCAAGTTGATCTGAGTACCCCTGACGGGCGCGCACGTTTGAGTACGCTGGC                                                                         <  1:143517/68‑1      TTAACAGTCTGATGCCGCAAGTTGATCTGAGTACCCCTGACGGGCGCGCACGTTTGAGTACGCTGGCA                                                                        >  1:1056974/1‑68                   GCCGCAAGTTGATCTGAGTACCCCTGACGGGCGCGCACGTTTGAGTACGCTGGCACTTGCGATATCAATGG                                                        >  1:3775669/1‑71                           TTGATCTGAGTACCCCTGACGGGCGCGCACGTTTGAGTACGCTGGCACTTGCGATATCAATGGTAGTGCCA                                                <  1:2248681/71‑1                           TTGATCTGAGTACCCCTGACGGGCGCGCACGTTTGAGTACGCTGGCACTTGCGATATCAATGGTAGTGC                                                  >  1:1132871/1‑69                           TTGATCTGAGTACCCCTGACGGGCGCGCACGTTTGAGTACGCTGGCACTTGCGATATCAATGGTAGTGC                                                  >  1:446608/1‑69                                 TGAGTACCCCTGACGGGCGCGCACGTTTGAGTACGCTGG                                                                          <  1:891890/39‑1                                                                        CACTTGCGATATCAATGGTAGTGCCAGCGTACTCAAACGTGCGCGCCCGTCAGGGGTACTCAGATCAAC     >  1:3851033/1‑69                                                                         ACTTGCGATATCAATGGTAGTGCCAGCGTACTCAAACGTGCGCGCCCGTCAGGGGTACTCAGATCAACTTG  <  1:4703298/71‑1                                                                           TTGCGATATCATTGGTAGTGCCAGCGTACTCAAACGTGCGCGCCCGTCAGGG                   <  1:3574816/52‑1                                                                                                                                                 TCTGTTTAACAGTCTGATGCCGCAAGTTGATCTGAGTACCCCTGACGGGCGCGCACGTTTGAGTACGCTGGCACT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  W3110S.gb/3210875‑3210949 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcactTGCGATATCAATGGTAGTGCCAGCGTACTCAAACGTGCGCGCCCGTCAGGGGTACTCAGATCAACTTG  <  W3110S.gb/3210964‑3210897

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.