| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 4178621 | 43 (0.850) | 5 (0.110) | 3/90 | NT | 11.9% | coding (330/510 nt) | gspH | predicted general secretory pathway component, cryptic |
| ? | W3110S.gb | = 4178633 | 36 (0.800) | coding (318/510 nt) | gspH | predicted general secretory pathway component, cryptic | |||||
AAGGGCGTGATTTGTCCGTCGGCCAGAATCACAACCTGTGGCTGGTTGCTGTCATCAGGTTTAAATGGCTGAAGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/4178547‑4178621‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgaagaACTCTCAATTCATCTTCAGCCATTTAAACCTGATGACAGCAACCAGCCACAGGTTGTGATTCTGGCCGA < W3110S.gb/4178633‑4178565 AAGGGCGTGATTTGTCCGTCGGCCAGAATCACAACCTGTGGCTGGTTGCTGTCATCAGGTTTAAATGGCTG < 1:46529/71‑1 CCAGAATCACAACCTGTGGCTGGTTGCTGTCATCAGGTTTAAATGGCTGAAGAACTCTCAATTCATCTTCA < 1:4673838/71‑1 AGAATCACAACCTGTGGCTGGTTGCTGTCATCAGGTTTAAATGGCTGAAG > 1:3316553/1‑50 AGAATCACAACCTGTGGCTGGTTGCTGTCATCAGATTTAAATGGCCGAAG > 1:4329837/1‑50 GAATCACAACCTGTGGCTGGTTGCTGTCATCAGGTTTAAATGGCTGAA > 1:1199081/1‑48 TCACAACCTGTGGCTGGTTGCTGTCATCAGGTTTAAATGGCTGAA < 1:648081/45‑1 TGTGGCTGGTTGCTGTCATCAGGTTTAAATGGCTGAA < 1:843357/37‑1 GTGGCTGGTTGCTGTCATCAGGTTTAAATGGATGAAGAACTCTCAATTCATCTTC > 1:3702328/1‑55 GTGGCTGGTTGCTGTCATCAGGTTTAAATGGATGAAGAACTCTCAATTCATCTTC > 1:1306548/1‑55 TGCTGTCATCAGGTTTAAATGGCTGAAGAACTCTCAATTCATCTTCA > 1:2438622/1‑47 TGCTGTAATCAGGTTTAAATGGCTGAAGAACTCTCAATTCATCTTCA > 1:1916735/1‑47 TGAAGAACTCTCAATTCATCTTCAGCCATTTAAACCTGATGACAGCAACCAGCCACAGGTTGTGATTCTGG > 1:2623717/1‑71 GAAGAACTCTCAATTCATCTTCAGCCATTTAAACCTGATGACAGCAACCAGCCACAGGTTGTGATTCTGGC > 1:1702979/1‑71 AAGAACTCTCAATTCATCTTCAGCCATTTAAACCTGATGACAGCAACCAGCCACAGGTTGTGATTCTGGCC > 1:2346544/1‑71 AAGAACTCTCAATTCATCTTCAGCCATTTAAACCTGATGACAGCAACCAGCCACAGGTTGTGATTCTGGCC > 1:3791308/1‑71 AAGAACTCTCAATTCATCTTCAGCCATTTAAACCTGATGACAGCAACCAGCCACAGGTTGTGATTCTGGCC > 1:1396898/1‑71 AAGAACTCTCAATTCATCTTCAGCCATTTAAACCTGATGACAGCAACCAGCCACAGGTTGTGATTCTGGCC > 1:104124/1‑71 AAGAACTCTCAATTCATCTTCAGCCATTTAAACCTGATGACAGCAACCAGCCACAGGTTGTGATTCTGGCC > 1:98720/1‑71 AGAACTCTCAATTCATCTTCAGCCATTTAAACCTGATGACAGCAACCAGCCACAGGTTGTGATTCTGGCCG < 1:2519755/71‑1 AGAACTCTCAATTCATCTTCAGCCATTTAAACCTGATGACAGCAACCAGCCACAGGTTGTGATTCTGGCCG < 1:4716397/71‑1 GAACTCTCAATTCATCTTCAGCCATTTAAACCTGATGACAGCAACCAGCCACAGGTTGTGATTCTGGCCGA < 1:3985830/71‑1 AAGGGCGTGATTTGTCCGTCGGCCAGAATCACAACCTGTGGCTGGTTGCTGTCATCAGGTTTAAATGGCTGAAGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/4178547‑4178621‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgaagaACTCTCAATTCATCTTCAGCCATTTAAACCTGATGACAGCAACCAGCCACAGGTTGTGATTCTGGCCGA < W3110S.gb/4178633‑4178565 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |