| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 4178621 | 43 (0.850) | 5 (0.110) | 3/90 | NT | 11.9% | coding (330/510 nt) | gspH | predicted general secretory pathway component, cryptic |
| ? | W3110S.gb | = 4178633 | 36 (0.800) | coding (318/510 nt) | gspH | predicted general secretory pathway component, cryptic | |||||
TCGGCCAGAATCACAACCTGTGGCTGGTTGCTGTCATCAGGTTTAAATGGCTGAAGATGAATTGAGAGTTCTTCATCCCAGTCATTTTGGCTCTCGTCTGCGGCATCTTCTTGTAATGGAACCCAGCGCCAGGC > W3110S.gb/4178565‑4178698 | tCGGCCAGAATCACAACCTGTGGCTGGTTGCTGTCATCAGGTTTAAATGGCTGAAGATGAATTGAGAGTtc < 1:3985830‑M2/71‑3 (MQ=255) cGGCCAGAATCACAACCTGTGGCTGGTTGCTGTCATCAGGTTTAAATGGCTGAAGATGAATTGAGAGTtct < 1:2519755‑M2/71‑4 (MQ=255) cGGCCAGAATCACAACCTGTGGCTGGTTGCTGTCATCAGGTTTAAATGGCTGAAGATGAATTGAGAGTtct < 1:4716397‑M2/71‑4 (MQ=255) ggCCAGAATCACAACCTGTGGCTGGTTGCTGTCATCAGGTTTAAATGGCTGAAGATGAATTGAGAGTtctt > 1:104124‑M2/1‑67 (MQ=255) ggCCAGAATCACAACCTGTGGCTGGTTGCTGTCATCAGGTTTAAATGGCTGAAGATGAATTGAGAGTtctt > 1:2346544‑M2/1‑67 (MQ=255) ggCCAGAATCACAACCTGTGGCTGGTTGCTGTCATCAGGTTTAAATGGCTGAAGATGAATTGAGAGTtctt > 1:3791308‑M2/1‑67 (MQ=255) ggCCAGAATCACAACCTGTGGCTGGTTGCTGTCATCAGGTTTAAATGGCTGAAGATGAATTGAGAGTtctt > 1:1396898‑M2/1‑67 (MQ=255) ggCCAGAATCACAACCTGTGGCTGGTTGCTGTCATCAGGTTTAAATGGCTGAAGATGAATTGAGAGTtctt > 1:98720‑M2/1‑67 (MQ=255) gCCAGAATCACAACCTGTGGCTGGTTGCTGTCATCAGGTTTAAATGGCTGAAGATGAATTGAGAGTtcttc > 1:1702979‑M2/1‑66 (MQ=255) ccAGAATCACAACCTGTGGCTGGTTGCTGTCATCAGGTTTAAATGGCTGAAGATGAATTGAGAGTtcttca > 1:2623717‑M2/1‑65 (MQ=255) aaTCACAACCTGTGGCTGGTTGCTGTCATCAGGTTTAAATGGCTGAAGATGAATTGAGAGTTCTTCATcc > 1:805559/1‑70 (MQ=255) aaTCACAACCTGTGGCTGGTTGCTGTCATCAGGTTTAAATGGCTGAAGATGAATTGAGAGTTCTTCATcc > 1:4649351/1‑70 (MQ=255) aaTCACAACCTGTGGCTGGTTGCTGTCATCAGGTTTAAATGGCTGAAGATGAATTGAGAGTTCTTCATcc > 1:3624146/1‑70 (MQ=255) tCACAACCTGTGGCTGGTTGCTGTCATCAGGTTTAAATGGCTGAAGATGAATTGAGAGTTCTTCATcc < 1:1543834/68‑1 (MQ=255) acaACCTGTGGCTGGTTGCTGTCATCAGGTTTAAATGGCTGAAGATGAATTGAGAGTTCTTCATCCCAGt > 1:2592876/1‑70 (MQ=255) acaACCTGTGGCTGGTTGCTGTCATCAGGTTTAAATGGCTGAAGATGAATTGAGAGTTCTTCATCCCAGTc < 1:2899326/71‑1 (MQ=255) aaCCTGTGGCTGGTTGCTGTCATCAGGTTTAATTGGCTGAAGATGAATTGAGAGTTCTTCATCCCAGTCAt < 1:3558223/71‑1 (MQ=255) aCCTGTGGCTGGTTGCTGTCATCAGGTTTAAATGGCTGAAGATGAATTGAGAGTTCTTCATCCCAGTCAtt < 1:897194/71‑1 (MQ=255) aCCTGTGGCTGGTTGCTGTCATCAGGTTTAAATGGCTGAAGATGAATTGAGAGTTCTTCATCCCAGTCAt < 1:2397945/70‑1 (MQ=255) ccTGTGGCTGGTTGCTGTCATCAGGTTTAAATGGCTGAAGATGAATTGAGAGTTCTTCATCCCAGTCAt < 1:1351598/69‑1 (MQ=255) tgtgGCTGGTTGCTGTCATCAGGTTTAAATGGCTGAAGATGAATTGAGAGTTCTTCATCCCa < 1:3818087/62‑1 (MQ=255) tgtgGCTGGTTGCTGTCATCAGGTTTAAATGGCTGAAGATGAATTGAGAGTTCTTCATCCCa < 1:4122788/62‑1 (MQ=255) gCTGGTTGCTGTCATCAGGTTTAAATGGCTGAAGATGAATTGAGAGTTCTTCATCCCAGTCAttt > 1:171300/1‑65 (MQ=255) gCTGGTTGCTGTCATCAGGTTTAAATGGCTGAAGATGAATTGAGAGTTCTTCATCCCAGTCATTTTGGctc < 1:934031/71‑1 (MQ=255) gCTGGTTGCTGTCATCAGGTTTAAATGGCTGAAGATGAATTGAGAGTTCTTCATCCCAGTCATTTTGGct < 1:2270467/70‑1 (MQ=255) gCTGGTTGCTGTCATCAGGTTTAAATGGCTGAAGATGAATTGAGAGTTCTTCATACCAGTCATTTTGGctc < 1:3547619/71‑1 (MQ=255) cTGTCATCAGGTTTAAATGGCTGAAGATGAATTGAGAGTTCTTCATCCCAGTCATTTTGGCTCTCGTCTg < 1:2187894/70‑1 (MQ=255) tGTCATCAGGTTTAAATGGCTGAAGATGAATTGAGAGTTCTTCATc < 1:1116325/46‑1 (MQ=255) tcatcaGGTTTAAATGGCTGAAGATGAATTGAGAGTTCTTCATCCCAGTCATTTTGGCTCTCGTCTGCgg > 1:1879800/1‑70 (MQ=255) catcaGGTTTAAATGGCTGAAGATGAATTGAGAGTTCTTCATCCCAGTCATTTTGGCTCTCGt > 1:1045974/1‑63 (MQ=255) atcaGGTTTAAATGGCTGAAGATGAATTGAGAGTTCTTCATCCCAGTCATTTTGGCTCTCGTCTGCGGCAt > 1:2578286/1‑71 (MQ=255) caGGTTTAAATGGCTGAAGATGAATTGAGAGTTCTTCATCCCAGTCATTTTGGCTCTCGTCTGCGGCAtct > 1:809373/1‑71 (MQ=255) aGGTTTAAATGGCTGAAGATGAATTGAGAGTTCTTCATCCCAGTCATTTTGGctct > 1:1727311/1‑56 (MQ=255) tttAAATGGCTGAAGATGAATTGAGAGTTCTTCATCCCAGTCATTTTGGCTCTCGTCTGCGGCATcttctt < 1:915250/71‑1 (MQ=255) ttAAATGGCTGAAGATGAATTGAGAGTTCTTCATCCCAGTCAttt > 1:1676398/1‑45 (MQ=255) ttAAATGGCTGAAGATGAATTGAGAGTTCTTCATCCCAGTCATTTTGGCTCTCGTCTGCGGCATCTTCTTg > 1:3894965/1‑71 (MQ=255) tAAATGGCTGAAGATGAATTGAGAGTTCTTCATCCCAGTCATTTTGGCTCTCGTCTGCGGCATCTTCTTg > 1:1288676/1‑70 (MQ=255) aaaTGGCTGAAGATGAATTGAGAGTTCTTCATCCCAGTCATTTTGGCTCTCGTCTGCGGCATCTTCTTGt < 1:1662609/70‑1 (MQ=255) aaaTGGCTGAAGATGAATTGAGAGTTCTTCATCCCAGTCATTTTGGCTCTCGTCTGCGGCATCTTCTTGt < 1:1801309/70‑1 (MQ=255) aaaTGGCTGAAGATGAATTGAGAGTTCTTCATCCCAGTCATTTTGGCTCTCGTCTGCGGCATCTTCTTGt < 1:2767830/70‑1 (MQ=255) aaaTGGCTGAAGATGAATTGAGAGTTCTTCATCCCAGTCATTTTGGCTCTCGTCTGCGGCATCTTCTTGt < 1:3671106/70‑1 (MQ=255) aTGGCTGAAGATGAATTGAGAGTTCTTCATCCCAGTCATTTTGGCTCTCGTCTg < 1:1617412/54‑1 (MQ=255) ggCTGAAGATGAATTGAGAGTTCTTCATCCCAGTCAttt > 1:4228043/1‑39 (MQ=255) gCTGAAGATGAATTGAGAGTTCTTCATCCCAGTCATTTTGGCTCTCGTCTGCGGCATCTTCTTGTAATgg < 1:2281748/70‑1 (MQ=255) cTGAAGATGAATTGAGAGTTCTTCATCCCAGTCATTTTGGCTCTCGTCTGCGGCATCTTCTTGTAATGGaa > 1:637438/1‑71 (MQ=255) tGAAGATGAATTGAGAGTtcttcagccatttaaacctgattacagca > 1:1916735‑M2/1‑18 (MQ=255) tGAAGATGAATTGAGAGTtcttcagccatttaaacctgatgacagcaaccagccacaggttgtgattctgg < 1:4673838‑M2/71‑54 (MQ=255) tGAAGATGAATTGAGAGTtcttcagccatttaaacctgatgacagca > 1:2438622‑M2/1‑18 (MQ=255) gAAGATGAATTGAGAGTtcttcatccatttaaacctgatgacagcaaccagccac > 1:3702328‑M2/1‑17 (MQ=255) gAAGATGAATTGAGAGTtcttcatccatttaaacctgatgacagcaaccagccac > 1:1306548‑M2/1‑17 (MQ=255) aTGAATTGAGAGTTCTTCATCCCAGTCATTTTGGCtctc > 1:2650654/1‑39 (MQ=255) gAATTGAGAGTTCTTCATCCCAGTCATTTTGGCTCTCGTCTGCGGCATcttctt > 1:2532157/1‑54 (MQ=255) aTTGAGAGTTCTTCATCCCAGTCATTTTGGCTCTCGTCTGCGGCATCTTCTTGTAATGGa < 1:1454976/60‑1 (MQ=255) aTTGAGAGTTCTTCATCCCAGTCATTTTGGCTCTCGTCTGCGGCATCTTCTTGTAATGGAACCCa > 1:2378908/1‑65 (MQ=255) aTTGAGAGTTCTTCATCCCAGTCATTTTGGCTCTCGTCTGCGGCATCTTCTTGTAATGGAACCCAgcgc > 1:4690754/1‑69 (MQ=255) gagaGTTCTTCATCCCAGTCATTTTGGCTCTCGTCTGCGGCa < 1:1651711/42‑1 (MQ=255) gagaGTTCTTCATCCCAGTCATTTTGGCTCTCGTCTGCGGCATCTTCTTGTAATGGAACCCAGCGCCAGGc > 1:3855599/1‑71 (MQ=255) gagaGTTCTTCATCCCAGTCATTTTGGCTCTCGTCTGCGGCATCTTCTTGTAATGGAACCCAGCGCCAGGc > 1:1529252/1‑71 (MQ=255) agagTTCTTCATCCCAGTCATTTTGGCTCTCGTCTGCGGCAtcttc < 1:2270639/46‑1 (MQ=255) agagTTCTTCATCCCAGTCATTTTGGCTCTCGTCTGCGGCAtcttc < 1:2534455/46‑1 (MQ=255) agagTTCTTCATCCCAGTCATTTTGGCTCTCGTCTGCGGCATCTTCTTGTAATGGaa > 1:2211270/1‑57 (MQ=255) ttcttcATCCCAGTCATTTTGGCTCTCGTCTGCGGCATCTTCTTGTaa < 1:4282852/48‑1 (MQ=255) ttcttcATCCCAGTCATTTTGGCTCTCGTCTGCGGCATCTTCTTGTaa < 1:2240866/48‑1 (MQ=255) | TCGGCCAGAATCACAACCTGTGGCTGGTTGCTGTCATCAGGTTTAAATGGCTGAAGATGAATTGAGAGTTCTTCATCCCAGTCATTTTGGCTCTCGTCTGCGGCATCTTCTTGTAATGGAACCCAGCGCCAGGC > W3110S.gb/4178565‑4178698 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |