| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 70061 = | 63 (1.240) | 31 (0.780) +CGCGTACAACT |
23/80 | NT | 35.7% | intergenic (‑13/‑326) | araB/araC | L‑ribulokinase/DNA‑binding transcriptional dual regulator |
| ? | W3110S.gb | 236044 = | 80 (1.570) | intergenic (‑42/‑23) | rnhA/dnaQ | ribonuclease HI, degrades RNA of DNA‑RNA hybrids/DNA polymerase III epsilon subunit | |||||
Only 100 of 125 total aligned reads displayed.
CCACCGCCAAAGCTCGCACAGAATCACTGCCAAAATCGAGGCCAATTGCAATCGCCATCGTTTCACTCCATCCAAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCT > W3110S.gb/69991‑70130 | ccACCGCCAAAGCTCGCACAGAATCACTGCCAAAATCGAGGCCAATTGCAATCGCCATCGTTTCACtccat > 1:1220967/1‑71 (MQ=255) cACCGCCAAAGCTCGCACAGAATCACTGCCAAAATCGAGGCCAATTGCAATCGCCATCGTTTCACtccatc > 1:61900/1‑71 (MQ=255) gagaacgatctggcgtgtaattgcagtgctcatagcggtcatttatgtcagacttgagttgtacgcgTcc < 1:2528379‑M1/3‑1 (MQ=255) ccGCCAAAGCTCGCACAGAATCACTGCCAAAATCGAGGCCAATTGCAATCGCCATCGTTTCACtccatcc > 1:3738247/1‑70 (MQ=255) cGCCAAAGCTCGCACAGAATCACTGCCAAAATCGAGGCCAATTGCAATCGCCATCGTTTCACtccatcca > 1:3569417/1‑70 (MQ=255) agaacgatctggcgtgtaattgcagtgctcatagcggtcatttatgtcagacttgagttgtacgcgTCCa < 1:325835‑M1/4‑1 (MQ=255) aacgatctggcgtgtaattgcagtgctcatagcggtcatttatgtcagacttgagttgtacgcgTCCaaa < 1:1760106‑M1/6‑1 (MQ=255) acgatctggcgtgtaattgcagtgctcatagcggtcatttatgtcagacttgagttgtacgcgTCCaaaaa > 1:3769956‑M1/64‑71 (MQ=255) cgatctggcgtgtaattgcagtgctcatagcggtcatttatgtcagacttgagttgtacgcgTCCaaaaaa > 1:3376395‑M1/63‑71 (MQ=255) aaaGCTCGCACAGAATCACTGCCAAAATCGAGGCCAATTGCAATCGCCATCGTTTCACTCCATCCaaaaaa < 1:1053475/71‑1 (MQ=255) aaaGCTCGCACAGAATCACTGCCAAAATCGAGGCCAATTGCAATCGCCATCGTTTCACTCCATCCaaaaa > 1:833040/1‑70 (MQ=255) cGCACAGAATCACTGCCAAAATCGAGGACAATTGCAATCGCCATCGTTTCACTCCATCCAAAAAAACggg > 1:391447/1‑70 (MQ=255) gcgtgtaattgcagtgctcatagcggtcatttatgtcagacttgagttgtacgcgTCCAAAAAAACggg > 1:732757‑M1/56‑69 (MQ=255) gcgtgtaattgcagtgctcatagcggtcatttatgtcagacttgagttgtacgcgTCCAAAAAAACgg > 1:134391‑M1/56‑68 (MQ=255) gCACAGAATCACTGCCAAAATCGAGGCCAATTGCAATCGCCATCGTTTCACTCCATCCaaaaa < 1:1387791/63‑1 (MQ=255) gCACAGAATCACTGCCAAAATCGAGGCCAATTGCAATCGCCATCGTTTCACTCCATCCaaaaa < 1:1696729/63‑1 (MQ=255) gCACAGAATCACTGCCAAAATCGAGGCCAATTGCAATCGCCATCGTTTCACTCCATCCAAAAAAACggg < 1:1524111/69‑1 (MQ=255) gCACAGAATCACTGCCAAAATCGAGGCCAATTGCAATCGCCATCGTTTCACTCCATCCAAAAAAACGGGTa > 1:505561/1‑71 (MQ=255) gtgtaattgcagtgctcatagcggtcatttatgtcagacttgagttgtacgcgTCCAAAAAAACGGGTATg > 1:581273‑M1/54‑71 (MQ=255) tgtaattgcagtgctcatagcggtcatttatgtcagacttgagttgtacgcgTCCAAAAAAACGGGTATgg > 1:4107220‑M1/53‑71 (MQ=255) tgtaattgcagtgctcatagcggtcatttatgtcagacttgagttgtacgcgTCCAAAAAAACGGGTATg < 1:207992‑M1/18‑1 (MQ=255) caGAATCACTGCCAAAATCGAGGCCAATTGCAATCGCCATCGTTTCACTCCATCCAAAAAAACGGGTATg > 1:1803069/1‑70 (MQ=255) aGAATCACTGCCAAAATCGAGGCCAATTGCAATCGCCATCGTTTCACTCCATCCAAAAAAACGGGTATGga < 1:1314539/71‑1 (MQ=255) aGAATCACTGCCAAAATAGAGGCCAATTGCAATCGCCATCGTTTCACTCCATCCAAAAAAACGGGTATg > 1:1319902/1‑69 (MQ=255) taattgcagtgctcatagcggtcatttatgtcagacttgagttgtacgcgTCCAAAAAAACGGGTATGgag > 1:3386914‑M1/51‑71 (MQ=255) gAATCACTGCCAAAATCGAGGCCAATTGCAATCGCGATCGTTTCACTCCATCCaaaaaaa > 1:1926005/1‑60 (MQ=255) gAATCACTGCCAAAATCGAGGCCAATTGCAATCGCCATCGTTTCACTCCATCCAAAAAAAc > 1:4135929/1‑61 (MQ=255) gCCAAAATCGAGGCCAATTGCAATCGCCATCGTTTCACTCCATCCAAAAAAACggg < 1:2983836/56‑1 (MQ=255) gCCAAAATCGAGGCCAATTGCAATCGCCATCGTTTCACTCCATCCAAAAAAACgg > 1:2887196/1‑55 (MQ=255) gCCAAAATCGAGGCCAATTGCAATCGCCATCGTTTCACTCCATCCAAAAAAACgg > 1:4298053/1‑55 (MQ=255) tgctcatagcggtcatttatgtcagacttgagttgtacgcgTCCaaaaa > 1:202421‑M1/42‑49 (MQ=255) ccAAAATCGAGGCCAATTGCAATCGCCATCGTTTCACTCCATCCAAAAAAACGGGTATGGAGaaa < 1:1724650/65‑1 (MQ=255) ccAAAATCGAGGCCAATTGCAATCGCCATCGTTTCACTCCATCCAAAAAAACGGGTATGGAGAAACAg > 1:3215766/1‑68 (MQ=255) cAAAATCGAGGCCAATTGCAATCGCCATCGTTTCACTCCATCCAAAAAAACGGGTATGGAGAAACAGTaga < 1:79284/71‑1 (MQ=255) ctcatagcggtcatttatgtcagacttgagttgtacgcgTCCAAAAAAACGGGTATGGAGAAACAGTaga > 1:3580237‑M1/40‑70 (MQ=255) aaaaTCGAGGCCAATTGCAATCGCCATCGTTTCACTCCATCCAAAAAAACGGGTATGGAGAAACAGTa > 1:33780/1‑68 (MQ=255) aaaTCGAGGCCAATTGCAATCGCCATCGTTTCACTCCATCCaaaaa > 1:117500/1‑46 (MQ=255) aaTCTAGGCCAATTGCAATCGCCATCGTTTCACTCCATCCAAAAAAACGGGTATGGAGAAACAGTagagag < 1:1538690/71‑1 (MQ=255) atagcggtcatttatgtcagacttgagttgtacgcgTCCAAAAAAACGGGTATggaa > 1:4533565‑M1/37‑56 (MQ=255) aTCGAGGCCAATTGCAATCGCCATCGTTTCACTCCATCCAAAAAAACGGGTATGGAGAAACAGTAGAGAGt > 1:3862525/1‑71 (MQ=255) tagcggtcatttatgtcagacttgagttgtacgcgTCCAAAAAAACGGGTATGGAGAAACAGTAGAGAGtt > 1:3819891‑M1/36‑71 (MQ=255) tCGAGGCCAATTGCAATCGCCATCGTTTCACTCCATCCAAAAAAACGGGTATGgaga > 1:711961/1‑57 (MQ=255) tCGAGGCCAATTGCAATCGCCATCGTTTCACTCCATCCAAAAAAACGGGTATGgaga > 1:481068/1‑57 (MQ=255) tCGAGGCCAATTGCAATCGCCATCGTTTCACTCCATCCAAAAAAACGGGTATGGAGAAACAGTaga < 1:4416123/66‑1 (MQ=255) tCGAGGCCAATTGCAATCGCCATCGTTTCACTCCATCCAAAAAAACGGGTATGGAGAAACAGTaga < 1:3855276/66‑1 (MQ=255) tCGAGGCCAATTGCAATCGCCATCGTTTCACTCCATCCAAAAAAACGGGTATGGAGAAACAGTAGAGACtt < 1:1214719/71‑1 (MQ=255) cGAGGCCAATTGCAATCGCCATCGTTTCACTCCATCCAAAAAAACGGGTATGGAGAAACAGTAGAGAGTTg > 1:4103504/1‑71 (MQ=255) gCCAATTGCAATCGCCATCGTTTCACTCCATCCAAAAAAACGGGt < 1:4500974/45‑1 (MQ=255) tcatttatgtcagacttgagttgtacgcgTCCAAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGAt < 1:4245500‑M1/41‑1 (MQ=255) catttatgtcagacttgagttgtacgcgTCCAAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATa < 1:769854‑M1/42‑1 (MQ=255) aaTTGCAATCGCCATCGTTTCACTCCATCCAAAAAAACGGGTATGGAGAAACa < 1:3357732/53‑1 (MQ=255) aaTTGCAATCGCCATCGTTTCACTCCATCCAAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATaaa < 1:559830/71‑1 (MQ=255) aaTTGCAATCGCCATCGTTTCACTCCATCCAAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATaa > 1:3814002/1‑70 (MQ=255) tttatgtcagacttgagttgtacgcgTCCAAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATaaaa > 1:3190243‑M1/27‑71 (MQ=255) aTTGCAATCGCCATCGTTTCACTCCATCCAAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATaaaa < 1:1845978/71‑1 (MQ=255) ttatgtcagacttgagttgtacgcgTCCAAAAAAACGGGTATGGAGAAACAGTaga < 1:4396643‑M1/31‑1 (MQ=255) ttatgtcagacttgagttgtacgcgTCCAAAAAAACGGGTATGGAGAAACAGTAGAGAGTTg < 1:3274426‑M1/37‑1 (MQ=255) ttGCAATCGCCATCGTTTCACTCCATCCAAAAAAACGGGTATGGAGAAACAGt > 1:346614/1‑53 (MQ=255) atgtcagacttgagttgtaagcgTCCAAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATa > 1:435021‑M1/24‑65 (MQ=255) tgtcagacttgagttgtacgcgTCCAAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGc > 1:108653‑M1/23‑70 (MQ=255) tcagacttgagttgtacgcgTCCAAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTc > 1:4663198‑M1/21‑71 (MQ=255) aTCGCCATCGTTTCACTCCATCCAAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGt > 1:225062/1‑70 (MQ=255) aTCGCCATCGTTTCACTCCATCCAAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGt > 1:3321971/1‑70 (MQ=255) aTCGCCATCGTTTCACTCCATCCAAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTc < 1:1082511/71‑1 (MQ=255) tCGCCATCGTTTCACTCCATCCAAAAAAACGGGTATGgaga < 1:2852564/41‑1 (MQ=255) tCGCCATCGTTTCACTCCATCCAAAAAAACGGGTATGGAGaaa < 1:1290097/43‑1 (MQ=255) tCGCCATCGTTTCACTCCATCCAAAAAAACGGGTATGGAGaaa < 1:4116495/43‑1 (MQ=255) tCGCCATCGTTTCACTCCATCCAAAAAAACGGGTATGGAGAAACAGTagag < 1:728822/51‑1 (MQ=255) tCGCCATCGTTTCACTCCATCCAAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGt > 1:2820283/1‑69 (MQ=255) agacttgagttgtacgcgTCCAAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAg < 1:1891777‑M1/53‑1 (MQ=255) agacttgagttgtacgcgTCCAAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAg < 1:3588102‑M1/53‑1 (MQ=255) gCCATCGTTTCACTCCATCCAAAAAAACGGGTATGGAGaaa > 1:1507334/1‑41 (MQ=255) gCCATCGTTTCACTCCATCCAAAAAAACGGGTATGGAGAAACAGTagagag > 1:2835051/1‑51 (MQ=255) gCCATCGTTTCACTCCATCCAAAAAAACGGGTATGGAGAAACAGTagagag > 1:1743906/1‑51 (MQ=255) ccATCGTTTCACTCCATCCAAAAAAACGGGTATGGTGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGt < 1:4164654/71‑1 (MQ=255) acttgagttgtacgcgTCCAAAAAAACGGGTATGGAGaaa > 1:304407‑M1/17‑40 (MQ=255) ttgagttgtacgcgTCCAAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAg < 1:4077399‑M1/57‑1 (MQ=255) tCGTTTCACTCCATCCAAAAAAACGGGTATGGAGAAACAGTagag < 1:744359/45‑1 (MQ=255) gagttgtacgcgTCCAAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATaaaaa > 1:2584570‑M1/13‑58 (MQ=255) gagttgtacgcgTCCAAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAgg > 1:3602556‑M1/13‑70 (MQ=255) gagttgtacgcgTCCAAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAg > 1:4558674‑M1/13‑69 (MQ=255) gTTTCACTCCATCCAAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGAt > 1:3280937/1‑71 (MQ=255) agttgtacgcgTCCAAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAgg < 1:4240232‑M1/54‑1 (MQ=255) agttgtacgcgTCCAAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAgg < 1:4234787‑M1/54‑1 (MQ=255) gttgtacgcgTCCAAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGc < 1:3227520‑M1/48‑1 (MQ=255) tCACTCCATCCAAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATcc < 1:597667/70‑1 (MQ=255) gtacgcgTCCAAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGc < 1:2924563‑M1/64‑1 (MQ=255) cTCCATCCAAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGc < 1:2733928/43‑1 (MQ=255) acgcgTCCAAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCt < 1:3932360‑M1/65‑1 (MQ=255) cgcgTCCAAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTaa < 1:882648‑M1/67‑1 (MQ=255) ccatccaAAAAAACGGGTATGGAGAAACAGTagaga < 1:517427/36‑1 (MQ=255) cgTCCAAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATc < 1:2739849‑M1/69‑1 (MQ=255) catccaAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCTCTAAt < 1:2571375/70‑1 (MQ=255) catccaAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAAt < 1:3609465/70‑1 (MQ=255) catccaAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATc > 1:4499494/1‑71 (MQ=255) gTCCAAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATaaa > 1:1564550‑M1/2‑45 (MQ=255) gTCCAAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCt > 1:1126096‑M1/2‑71 (MQ=255) tccaAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATaaa < 1:2141883/44‑1 (MQ=255) tccaAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATaaa < 1:2429292/44‑1 (MQ=255) tccaAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCt > 1:3889006/1‑70 (MQ=255) | CCACCGCCAAAGCTCGCACAGAATCACTGCCAAAATCGAGGCCAATTGCAATCGCCATCGTTTCACTCCATCCAAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCT > W3110S.gb/69991‑70130 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |