| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 70061 = | 63 (1.240) | 31 (0.780) +CGCGTACAACT |
23/80 | NT | 35.7% | intergenic (‑13/‑326) | araB/araC | L‑ribulokinase/DNA‑binding transcriptional dual regulator |
| ? | W3110S.gb | 236044 = | 80 (1.570) | intergenic (‑42/‑23) | rnhA/dnaQ | ribonuclease HI, degrades RNA of DNA‑RNA hybrids/DNA polymerase III epsilon subunit | |||||
Only 100 of 150 total aligned reads displayed.
TCGGTGAAAATTTCTACCTGTTTAAGCATCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGATACCGAAACCACC > W3110S.gb/235974‑236114 | tCGGTGAAAATTTCTACCTGTTTAAGCATCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGAc < 1:3338674/71‑1 (MQ=255) cctacctgacgctttttatcgcaactctctactgtttctccatacccgtttttttggacgcgtacaactc > 1:3602556‑M2/70‑70 (MQ=255) cGGTGAAAATTTCTACCTGTTTAAGCATCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGAc > 1:4200242/1‑70 (MQ=255) ggTGAAAATTTCTACCTGTTTAAGCATCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGAc > 1:3053640/1‑69 (MQ=255) ggTGAAAATTTCTACCTGTTTAAGCATCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGAc > 1:1718886/1‑69 (MQ=255) ggTGAAAATTTCTACCTGTTTAAGCATCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACaa < 1:4209339/71‑1 (MQ=255) tGAAAATTTCTACCTGTTTAAGCATCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGt < 1:1897452/71‑1 (MQ=255) ctgacgctttttatcgcaactctctactgtttctccatacccgtttttttggacgcgtacaactCAAGTCt < 1:3588102‑M2/7‑1 (MQ=255) aaaaTTTCTACCTGTTTAAGCATCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTc < 1:3816855/70‑1 (MQ=255) gacgctttttatcgcaactctctactgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGa > 1:4663198‑M2/63‑71 (MQ=255) aaTTTCTACCTGTTTAAGCATCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTg < 1:2494230/70‑1 (MQ=255) gctttttatcgcaactctctactgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACa > 1:108653‑M2/60‑70 (MQ=255) tttttatcgcaactctctactgtttctccatacccgtttttttggacgcgtacaactc > 1:2584570‑M2/58‑58 (MQ=255) cTACCTGTTTAAGCATCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATa > 1:3970796/1‑70 (MQ=255) ttttatcgcaactctctactgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATaaa > 1:3190243‑M2/57‑71 (MQ=255) ccTGTTTAAGCATCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATg < 1:1493421/71‑1 (MQ=255) ccTGTTTAAGCATCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATg < 1:3292866/71‑1 (MQ=255) tatcgcaactctctactgtttctccatacccgtttttttggacgcttacaactCAAGTCTGACAt > 1:435021‑M2/54‑65 (MQ=255) tatcgcaactctctactgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACAt > 1:2632862‑M2/54‑65 (MQ=255) tatcgcaactctctactgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATAAATg < 1:769854‑M2/17‑1 (MQ=255) tGTTTAAGCATCTCTGGTAGACTTCCTGTACTTGAATCGAACTGTAAAACGACAAGTCTGACATa < 1:3795971/65‑1 (MQ=255) atcgcaactctctactgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATAAATGa < 1:4245500‑M2/18‑1 (MQ=255) tAAGCATCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGc > 1:412388/1‑70 (MQ=255) tAAGCATCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGc < 1:4424662/70‑1 (MQ=255) caactctctactgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATaa < 1:3274426‑M2/14‑1 (MQ=255) aaGCATCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTa > 1:3419163/1‑71 (MQ=255) aGCATCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGGCTGACATAAATGACCGCTAt < 1:1053659/71‑1 (MQ=255) aTCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAg < 1:3202819/71‑1 (MQ=255) tctcTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAAt < 1:2085678/58‑1 (MQ=255) tctactgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATaa < 1:4396643‑M2/14‑1 (MQ=255) tctGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAg > 1:653121/1‑68 (MQ=255) ctGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACt > 1:3693633/1‑71 (MQ=255) ctGGTAGACTTCCTGTAATTGAACCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACt > 1:1132113/1‑71 (MQ=255) tGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGAc > 1:2449901/1‑48 (MQ=255) tGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGc < 1:2643408/60‑1 (MQ=255) gTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGc < 1:1541225/70‑1 (MQ=255) gTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGc < 1:3969368/70‑1 (MQ=255) gTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCa < 1:3945937/71‑1 (MQ=255) tttctccatacccgtttttttggacgcgtacaactCAAGt > 1:304407‑M2/36‑40 (MQ=255) gACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAAt < 1:2179364/70‑1 (MQ=255) gACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAAt < 1:2897235/70‑1 (MQ=255) ttccatacccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTAt > 1:4533565‑M2/33‑57 (MQ=255) ctccatacccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTa > 1:3386914‑M2/33‑71 (MQ=255) aCTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTa < 1:1366286/71‑1 (MQ=255) cTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTac < 1:2229438/71‑1 (MQ=255) ttCCTGTAATTGAATCGAACTGTAAAACGACAAGTCt < 1:1804576/37‑1 (MQ=255) ttCCTGTAATTGAATCGAACTGTAAAACGACAAGTCt < 1:2739674/37‑1 (MQ=255) ccatacccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTaca > 1:4590124‑M2/31‑71 (MQ=255) ccatacccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTaca > 1:4107220‑M2/31‑71 (MQ=255) tCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATg < 1:946371/46‑1 (MQ=255) catacccgtttttttggacgcgtacaactCAAGTCTGACATa < 1:4087747‑M2/13‑1 (MQ=255) catacccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTacac > 1:581273‑M2/30‑71 (MQ=255) catacccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTaca < 1:207992‑M2/41‑1 (MQ=255) ccTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGAc > 1:2064190/1‑47 (MQ=255) cTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGc < 1:4017034/71‑1 (MQ=255) tAATTGAATCGAACTGTAAAACGACAAGTCTGACAt < 1:3445582/36‑1 (MQ=255) tAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAAt < 1:1573617/40‑1 (MQ=255) tAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGa > 1:540715/1‑42 (MQ=255) ccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGc > 1:134391‑M2/25‑68 (MQ=255) gtttttttggacgcgtacaactCAAGTCTGACATAAATGACAGCTATGAg > 1:148256‑M2/23‑50 (MQ=255) aTTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGa < 1:1571527/70‑1 (MQ=255) tttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACt < 1:3326025‑M2/32‑1 (MQ=255) ttGAATCGAACTGTAAAACGACAAGTCTGACATaa < 1:4598321/35‑1 (MQ=255) ttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCg > 1:3376395‑M2/21‑71 (MQ=255) ttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCg > 1:763271‑M2/21‑71 (MQ=255) ttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCg > 1:2289325‑M2/21‑71 (MQ=255) gAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTAt > 1:986317/1‑44 (MQ=255) gAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTAt > 1:1110088/1‑44 (MQ=255) gAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGt > 1:1368946/1‑71 (MQ=255) gAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGt > 1:448207/1‑71 (MQ=255) gAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGt > 1:1844976/1‑71 (MQ=255) tttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGtt < 1:1760106‑M2/53‑1 (MQ=255) tCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCg > 1:1046296/1‑67 (MQ=255) cGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTtctc > 1:1217874/1‑71 (MQ=255) cGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTtctc > 1:4682739/1‑71 (MQ=255) ggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTtctc < 1:2528379‑M2/56‑1 (MQ=255) gAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCg < 1:4126529/71‑1 (MQ=255) gcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTAc > 1:656902‑M2/11‑71 (MQ=255) tAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCa < 1:242868/43‑1 (MQ=255) tAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGATAcc < 1:2237739/70‑1 (MQ=255) gtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCa < 1:2530119‑M2/46‑1 (MQ=255) gtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTtct < 1:3640014‑M2/55‑1 (MQ=255) acaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCg > 1:2642212‑M2/7‑63 (MQ=255) acaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACcgc > 1:1499768‑M2/7‑69 (MQ=255) aaaCGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAAt > 1:3887293/1‑43 (MQ=255) aaaCGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGATACCGaa < 1:1148588/71‑1 (MQ=255) aaaCGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGATACCGa < 1:4383911/70‑1 (MQ=255) aaaCGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGATACCGa < 1:3649088/70‑1 (MQ=255) aaaCGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGATACCGa < 1:2302421/70‑1 (MQ=255) caactCAAGTCTGACATAAATGACCGCTATGAGCACTGCaa > 1:3518522‑M2/6‑41 (MQ=255) caactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTaca > 1:3479445‑M2/6‑46 (MQ=255) caactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGcaa > 1:2992054‑M2/6‑71 (MQ=255) aCGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAAt > 1:432072/1‑41 (MQ=255) aCGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGa > 1:3831806/1‑62 (MQ=255) cGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGATACCGAAac > 1:2944890/1‑70 (MQ=255) actCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTaca > 1:1919690‑M2/4‑44 (MQ=255) actCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGCAacc < 1:2754756‑M2/68‑1 (MQ=255) aCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGATACCGaa > 1:3673719/1‑66 (MQ=255) cAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGAt < 1:2723857/59‑1 (MQ=255) cAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGAt < 1:2403660/59‑1 (MQ=255) | TCGGTGAAAATTTCTACCTGTTTAAGCATCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGATACCGAAACCACC > W3110S.gb/235974‑236114 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |