| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 71265 | 47 (0.920) | 12 (0.330) +AGGGTCCCTAAGTC |
9/74 | NT | 33.6% | coding (879/879 nt) | araC | DNA‑binding transcriptional dual regulator |
| ? | W3110S.gb | 3464879 = | 19 (0.370) | intergenic (‑255/+46) | murB/rrfB | UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding/5S ribosomal RNA | |||||
GGGCCAGCCCGAGCGAGTTTCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCATAGGGTTTGCAGAATCCCTGCTTCGTCC > W3110S.gb/71195‑71334 | gggCCAGCCCGAGCGAGTTTCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATaa < 1:1003916/71‑1 (MQ=255)gggCCAGCCCGAGCGAGTTTCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATaa > 1:4070041/1‑71 (MQ=255) gCCAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAag > 1:2292199‑M1/1‑69 (MQ=255) cAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAaggg < 1:903061‑M1/71‑5 (MQ=255) ccGAGCGAGTTTCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATaa > 1:342145/1‑63 (MQ=255) ccGAGCGAGTTTCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATaa > 1:3478153/1‑63 (MQ=255) agcgagTTTCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACg < 1:4384820/69‑1 (MQ=255) agcgagTTTCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACg < 1:1946265/69‑1 (MQ=255) agcgagTTTCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGaa < 1:3592802/71‑1 (MQ=255) cgagTTTCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAt < 1:477621/59‑1 (MQ=255) cgagTTTCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAAc < 1:3863182/66‑1 (MQ=255) agTTTCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAAt > 1:3448288/1‑68 (MQ=255) agTTTCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAg < 1:1907834/71‑1 (MQ=255) tttCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGAc < 1:952344/71‑1 (MQ=255) tttCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGAc < 1:2690935/71‑1 (MQ=255) tttCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGAc < 1:2094484/71‑1 (MQ=255) cGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGACAAt > 1:588927/1‑71 (MQ=255) gTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGACAAtt < 1:756515/71‑1 (MQ=255) gTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGACAAtt < 1:2799272/71‑1 (MQ=255) gTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGACAAtt < 1:4039365/71‑1 (MQ=255) ccGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaa < 1:2046369‑M1/70‑24 (MQ=255) ccGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaa < 1:3911572‑M1/70‑24 (MQ=255) gTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtcta < 1:2404956‑M1/60‑17 (MQ=255) gTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGACAATTGACGGc > 1:2177476/1‑71 (MQ=255) gTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGACAATTGACGGc > 1:992078/1‑71 (MQ=255) gTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGACAATTGACGGc > 1:1534564/1‑71 (MQ=255) ttGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcc < 1:3708513‑M1/71‑29 (MQ=255) tgtgAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcc > 1:834290‑M1/1‑42 (MQ=255) gaagaaAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGAc > 1:4086288/1‑71 (MQ=255) aagaaAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGt < 1:2190268/43‑1 (MQ=255) aagaaAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAAt > 1:184008/1‑50 (MQ=255) aagaaAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATc > 1:508840/1‑51 (MQ=255) aagaaAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACg > 1:4270264/1‑71 (MQ=255) agaaAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtct > 1:94366‑M1/1‑37 (MQ=255) agaaAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACgg < 1:4113523/71‑1 (MQ=255) agaaAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACg > 1:2239060/1‑70 (MQ=255) gaaAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctt < 1:250769‑M1/71‑36 (MQ=255) aaaaaGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaa > 1:1980217‑M1/1‑35 (MQ=255) aaaGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttcg < 1:3811626‑M1/71‑39 (MQ=255) aaGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAg < 1:1014285/71‑1 (MQ=255) aaGTGAATGATGTAGCCGTCAACTTGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAg < 1:2274699/71‑1 (MQ=255) aGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGa > 1:389444/1‑66 (MQ=255) aGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAg > 1:1339111/1‑70 (MQ=255) gTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaa < 1:2145834‑M1/53‑24 (MQ=255) tgatgTAGCCGTCAAGTTGTCATAAagggtccctaagt > 1:1426975‑M1/1‑25 (MQ=255) gatgTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtct < 1:3881912‑M1/58‑35 (MQ=255) tAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGACAAtt < 1:3102116/41‑1 (MQ=255) gCCGTCAAGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCATAGGGTTTg > 1:1209497/1‑68 (MQ=255) cGTCAAGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCATAGGGTTTGCAGaa > 1:2203730/1‑71 (MQ=255) cGTCAAGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCATAGGGTTTGCAGaa < 1:910354/71‑1 (MQ=255) gTCAAGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAGt < 1:2671779/52‑1 (MQ=255) tCAAGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACg < 1:3510102/47‑1 (MQ=255) tCAAGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCATAGGGTTTGCAGa < 1:3364103/68‑1 (MQ=255) cAAGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCtt < 1:1661982/42‑1 (MQ=255) cAAGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCATAGGGt > 1:3495308/1‑60 (MQ=255) cAAGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCATAGGGt > 1:632878/1‑60 (MQ=255) aaGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttcgactgagcctttcgtttt < 1:4479883‑M1/67‑56 (MQ=255) aaGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCATAGGGTTTGCAGAATccc > 1:3957665/1‑71 (MQ=255) aaGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCATAGGGTTTGCAGAATccc > 1:942005/1‑71 (MQ=255) aGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCATAGGGTTTGCAGAATccc < 1:1872997/70‑1 (MQ=255) aGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCATAGGGTTTGCAGAATc > 1:2277934/1‑68 (MQ=255) gTTGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCATAGGGTTTGCAGAATCCCTg > 1:1949667/1‑71 (MQ=255) ttGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGa < 1:3617336/44‑1 (MQ=255) ttGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCa < 1:4107676/50‑1 (MQ=255) gTCATAATTGGTAACGAATCAGACAATTGACGGCTTGa > 1:2623135/1‑38 (MQ=255) tCATAAagggtccctaagtctaaaacgaaaggcccagtctttcgactgagcctttcgttttatttgaccg < 1:468135‑M1/70‑65 (MQ=255) tCATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAg < 1:3103583/45‑1 (MQ=255) tCATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCATAGGGTTTGCa < 1:3629491/58‑1 (MQ=255) tCATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCATAGGGTTTGCAGAATcc > 1:451230/1‑64 (MQ=255) cATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCATAGGGTTTGCAGAATc < 1:1220579/62‑1 (MQ=255) aTAATTGGTAACGAATCAGACAATTGACGGCTT‑ACGGAGTAGCATAGGGTTTGCAGAATCCCt < 1:2235374/63‑1 (MQ=255) tAAagggtccctaagtctaaaacgaaaggcccagtctttcgactgag > 1:1593600‑M1/1‑3 (MQ=255) tAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCATAGGGTTTGCAGAATccc > 1:119258/1‑62 (MQ=255) tAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCATAGGGTTTGCAGAATCCCTGCTTCGTc > 1:1648597/1‑71 (MQ=255) aaTTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCATAGGGTTTGCAGaa > 1:2081966/1‑57 (MQ=255) aaTTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCATAGGGTTTGCAGAATCCCTg > 1:3062439/1‑63 (MQ=255) aaTTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCATAGGGTTTGCAGAATCCCTGCTTCGTc > 1:1716253/1‑70 (MQ=255) aTTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCATAGGGTTTGCAGAATCCCTGCTTCGTcc > 1:306163/1‑70 (MQ=255) | GGGCCAGCCCGAGCGAGTTTCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCATAGGGTTTGCAGAATCCCTGCTTCGTCC > W3110S.gb/71195‑71334 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |