| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 71265 | 47 (0.920) | 12 (0.330) +AGGGTCCCTAAGTC |
9/74 | NT | 33.6% | coding (879/879 nt) | araC | DNA‑binding transcriptional dual regulator |
| ? | W3110S.gb | 3464879 = | 19 (0.370) | intergenic (‑255/+46) | murB/rrfB | UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding/5S ribosomal RNA | |||||
TTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGCAGTTCCCTACTCTCGC > W3110S.gb/3464818‑3464949 | ccggttgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGaa < 1:2046369‑M2/9‑1 (MQ=255)ccggttgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGaa < 1:3911572‑M2/9‑1 (MQ=255) gttgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTa < 1:2404956‑M2/2‑1 (MQ=255) ttgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGcc < 1:3708513‑M2/14‑1 (MQ=255) tgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGcc > 1:834290‑M2/57‑70 (MQ=255) agaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCt > 1:94366‑M2/52‑71 (MQ=255) gaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCtt < 1:250769‑M2/21‑1 (MQ=255) aaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGaaa > 1:1980217‑M2/50‑59 (MQ=255) ccGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTc < 1:1287016/71‑1 (MQ=32) cggcggATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCg < 1:2215214/71‑1 (MQ=34) aaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCg < 1:3811626‑M2/24‑1 (MQ=255) gcggATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGAc > 1:2774990/1‑71 (MQ=34) gtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGaa < 1:2145834‑M2/9‑1 (MQ=255) cggATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGAc > 1:3883173/1‑70 (MQ=35) gATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTc < 1:3565507/65‑1 (MQ=33) tGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCt > 1:982609/1‑71 (MQ=34) gatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCt < 1:3881912‑M2/20‑1 (MQ=255) gTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCtt > 1:670149/1‑71 (MQ=34) cTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTc > 1:4639163/1‑70 (MQ=35) aCTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGtt > 1:1398608/1‑71 (MQ=34) aagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGtttt < 1:4479883‑M2/41‑1 (MQ=255) tcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATttgaccg < 1:468135‑M2/50‑4 (MQ=255) ttCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTc < 1:756219/42‑1 (MQ=35) ttCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTc < 1:4309927/42‑1 (MQ=35) taaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAg > 1:1593600‑M2/18‑47 (MQ=255) cACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGAc > 1:3639242/1‑43 (MQ=38) ccGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGa > 1:2226231/1‑40 (MQ=40) cGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGc < 1:582338/69‑1 (MQ=35) cGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGCAg > 1:2327104/1‑71 (MQ=34) gACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCttt > 1:2057003/1‑48 (MQ=38) gACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGCAGt < 1:285251/71‑1 (MQ=34) aacaacAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGCAGTTccc < 1:3284705/71‑1 (MQ=34) ctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGa > 1:2769740‑M2/8‑36 (MQ=255) caacaGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGCAGTTCCCTa > 1:3486940/1‑71 (MQ=34) acaGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGCAGTTccc > 1:4022016/1‑67 (MQ=35) aagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGcc > 1:4243784‑M2/6‑37 (MQ=255) caGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGCAGTTCCCTActc < 1:1636752/71‑1 (MQ=34) gATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGCAGTTCCCTACtctc < 1:2129662/71‑1 (MQ=34) tAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGCAGTTCCCTACTCTCGc < 1:3911571/71‑1 (MQ=34) | TTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGCAGTTCCCTACTCTCGC > W3110S.gb/3464818‑3464949 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |