| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 315707 | NA (NA) | 70 (1.200) | 47/102 | NT | 100% | coding (654/687 nt) | ykgA | predicted DNA‑binding transcriptional regulator |
| ? | W3110S.gb | 576911 = | 0 (0.000) | coding (76/498 nt) | ybcS | predicted lysozyme | |||||
CTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGCATATTCACATACCGTACCAGCAAAAGTT > W3110S.gb/315639‑315776 | cTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCATa < 1:5242529/71‑1 (MQ=32) cAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCATa > 1:1009142/1‑69 (MQ=33) aGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCATAAAg > 1:5207918/1‑71 (MQ=38) cGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCATAAAGTCCt > 1:4563082/1‑71 (MQ=255) cGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCATAAAGTCCt > 1:5342324/1‑71 (MQ=255) aCAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCATAAAGTCCTCggg > 1:669507/1‑71 (MQ=255) cagtttGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCATAAAGTCCTCGGGt > 1:2294223/4‑71 (MQ=255) cAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCATaaa > 1:2113005/1‑61 (MQ=37) cAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCATAAAGTCCTCGGGt > 1:3125531/1‑71 (MQ=255) aaTTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCATAAAGTCCTCGGGt > 1:3826039/1‑70 (MQ=255) aTTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCATAAAGTCCTCGGGTc > 1:953891/1‑70 (MQ=255) tttGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCATAAAGTCCTCGGGTCGt < 1:1482030/71‑1 (MQ=255) aaaaCAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTc < 1:3335747/71‑1 (MQ=255) aaaCAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCATaaa > 1:4308023/1‑53 (MQ=38) aaCAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCATa < 1:3876854/50‑1 (MQ=35) aaCAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCATAAAGTCCTCggg > 1:4995600/1‑61 (MQ=255) aCAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCATAAAGTCCTCg < 1:157333/58‑1 (MQ=255) cAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCATAAAGTCCt > 1:3525942/1‑55 (MQ=255) aaGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCa < 1:4559412/68‑1 (MQ=255) aaGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCActc > 1:4190015/1‑71 (MQ=255) aaCCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCttt < 1:4181859/71‑1 (MQ=255) cTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTgg < 1:5014915/71‑1 (MQ=255) cGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCATaaa > 1:3803022/1‑41 (MQ=40) cGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCa > 1:705223/1‑71 (MQ=255) cGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCa > 1:4766845/1‑71 (MQ=255) ttAGGCCTGTGTCCATATTACGTGGGTAGGATCATa < 1:1372635/36‑1 (MQ=37) ttAGGCCTGTGTCCATATTACGTGGGTAGGATCATa < 1:751849/36‑1 (MQ=37) aGGCCTGTGTCCATATTACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGt < 1:283517/52‑1 (MQ=255) aGGCCTGTGTCCATATTACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGt < 1:2576596/69‑1 (MQ=255) aGGCCTGTGTCCATATTACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGt > 1:4459938/1‑69 (MQ=255) gCCTGTGTCCATATTACGTGGGTAGGATCATAAAGTCCTc < 1:858283/40‑1 (MQ=255) gCCTGTGTCCATATTACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAg > 1:2423388/1‑70 (MQ=255) ccTGTGTCCATATTACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCa > 1:2202480/1‑68 (MQ=255) cTGTGTCCATATTACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGc < 1:5077318/61‑1 (MQ=255) cTGTGTCCATATTACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGCa > 1:3049315/1‑70 (MQ=255) tgtgTCCATATTACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCActc > 1:1164099/1‑53 (MQ=255) gtgtCCATATTACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTc > 1:190362/1‑64 (MQ=255) tgtCCATATTACGTGGGTAGGATCATAAAGTCCTCGGGt < 1:2686169/39‑1 (MQ=255) tgtCCATATTACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGCata < 1:3992686/69‑1 (MQ=255) tgtCCATATTACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGCata < 1:4509542/69‑1 (MQ=255) ccATATTACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGCATATTca > 1:4504540/1‑70 (MQ=255) cATATTACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGCATATTcaca > 1:1298240/1‑71 (MQ=255) atatTACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGCATATTcaca > 1:85401/1‑70 (MQ=255) atatTACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGCATATTcaca > 1:1470331/1‑70 (MQ=255) tatTACGTGGGTAGGATCATAAAGTCCTCGGGTCg < 1:4289920/35‑1 (MQ=255) tatTACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTg < 1:5224764/38‑1 (MQ=255) tatTACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGCATATTCACATa > 1:4751208/1‑71 (MQ=255) atTACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGCATATTCACATAc > 1:5110818/1‑71 (MQ=255) ttACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCtt < 1:4645605/45‑1 (MQ=255) ttACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCa > 1:488364/1‑51 (MQ=255) ttACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGCATATTc > 1:4778077/1‑64 (MQ=255) ttACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGCATATTCACATAcc > 1:96106/1‑71 (MQ=255) tACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGCATATTCACATAcc > 1:4623885/1‑70 (MQ=255) tACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGCATATTCACATACCg > 1:370048/1‑71 (MQ=255) cGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCActc < 1:1686739/40‑1 (MQ=255) cGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGCATATTCACATACCGTa < 1:3945262/71‑1 (MQ=255) tGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCActc < 1:3854857/38‑1 (MQ=255) tGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCtt < 1:546030/40‑1 (MQ=255) tGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCtt < 1:275651/40‑1 (MQ=255) gggTAGGATCATAAAGTCCTCGGCTCGTTGTCCACTCTTTTGGCATGTCAGCATATTCACATACCGt < 1:2199848/67‑1 (MQ=255) ggTAGGATCATAAAGTCCTCGGGTCGTTGTCCActct < 1:3691622/37‑1 (MQ=255) ggTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGCATATTCACATACCGTACCAg > 1:2144133/1‑71 (MQ=255) ggTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGCATATTCACATACCGTACCAg > 1:499641/1‑71 (MQ=255) gTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCa < 1:4179340/48‑1 (MQ=255) gTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGCATATTcaca > 1:4360788/1‑59 (MQ=255) gTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGCATATTCACATACCGTACCAGc < 1:439106/71‑1 (MQ=255) ggATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGCATATTCACATACCGTACCAGCaa > 1:1044747/1‑70 (MQ=255) ggATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGCATATTCACATACCGTACCAGCaa < 1:811928/70‑1 (MQ=255) gATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATg < 1:2626714/41‑1 (MQ=255) tCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGCATATTcaca > 1:650085/1‑53 (MQ=255) tCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGCATATTCACATACCGTACCAGCAAAAGt > 1:5217184/1‑71 (MQ=255) aTAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGCATATTcaca < 1:2963433/51‑1 (MQ=255) aTAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGCATATTCACATACCGTACCAGCAAAAGtt > 1:2415377/1‑70 (MQ=255) aTAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGCATATTCACATACCGTACCAGCAAAAGtt < 1:1338158/70‑1 (MQ=255) aTAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGCATATTCACATACCGTACCAGCAAAAGtt > 1:4867178/1‑70 (MQ=255) | CTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGCATATTCACATACCGTACCAGCAAAAGTT > W3110S.gb/315639‑315776 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |