| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 315707 | NA (NA) | 70 (1.200) | 47/102 | NT | 100% | coding (654/687 nt) | ykgA | predicted DNA‑binding transcriptional regulator |
| ? | W3110S.gb | 576911 = | 0 (0.000) | coding (76/498 nt) | ybcS | predicted lysozyme | |||||
Only 100 of 206 total aligned reads displayed.
TCCATCATTACGAAAAGCCGTTGCTGCTGCTATTGGTGGCGGAGCAATTGCTATAGCATCAGTGTTAATCACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACAAAGATATTGTTGGTGTATG > W3110S.gb/576841‑576981 | cctcagtccggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcaa < 1:3315141‑M2/1‑1 (MQ=255) ctcagtccggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcaAc < 1:4292251‑M2/2‑1 (MQ=255) tcagtccggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcaa < 1:1692308‑M2/1‑1 (MQ=255) tcagtccggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcaAc > 1:3735912‑M2/69‑70 (MQ=255) tcagtccggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcaAc > 1:3575741‑M2/69‑70 (MQ=255) catcatTACGAAAAGCCGTTGCTGCTGCTATTGGTGGCGGAGCAATTGCTATAGCATCAGTGTTAATCACt > 1:2819173/1‑71 (MQ=255) cagtccggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcaACTg > 1:2785806‑M2/68‑71 (MQ=255) atcatTACGAAAAGCCGTTGCTGCTGCTATTGGTGGCGGAGCAATTGCTATAGCATCAGTGTTAATCACTt < 1:1999044‑M2/71‑2 (MQ=255) atcatTACGAAAAGCCGTTGCTGCTGCTATTGGTGGCGGAGCAATTGCTATAGCATCAGTGTTAATCACTt > 1:4263659‑M2/1‑70 (MQ=255) agtccggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcaACt < 1:3442324‑M2/3‑1 (MQ=255) atTACGAAAAGCCGTTGCTGCTGCTATTGGTGGCGGAGCAATTGCTATAGCATCAGTGTTAATCAc > 1:3470236/1‑66 (MQ=255) atTACGAAAAGCCGTTGCTGCTGCTATTGGTGGCGGAGCAATTGCTATAGCATCAGTGTTAATCACTtgat < 1:4480523‑M2/71‑5 (MQ=255) cggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcaACTGGcc > 1:218532‑M2/63‑69 (MQ=255) aCGAAAAGCCGTTGCTGCTGCTATTGGTGGCGGAGCAATTGCTATAGCATCAGTGTTAATCACTtgatct > 1:1445470‑M2/1‑64 (MQ=255) gaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcaACTGGCCCa < 1:1677833‑M2/9‑1 (MQ=255) gaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcaACTGGCCCAAg < 1:1310435‑M2/11‑1 (MQ=255) aacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcaACTGGCCCAAGt > 1:1607347‑M2/60‑71 (MQ=255) aaaaGCCGTTGCTGCTGCTATTGGTGGCGGAGCAATTGCTATAGCATCAGTGTTAATCACTtgatcttacc < 1:3670321‑M2/71‑11 (MQ=255) aaaGCCGTTGCTGCTGCTATTGGTGGCGGAGCAATTGCTATAGAATCAGTGTTAATCACTtgatcttacc < 1:115800‑M2/70‑11 (MQ=255) atttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcaACTGGCCCAAGTGGt < 1:1054994‑M2/15‑1 (MQ=255) tgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcaACTGGCCCAAGTGGTAAc < 1:4712868‑M2/18‑1 (MQ=255) gTTGCTGCTGCTATTGGTGGCGGAGCAATTGCTATAGCATCAGTGTTAATCACTtgatcttacccagcaat > 1:2679819‑M2/1‑54 (MQ=255) aaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcaACTGGCCCAAGTGGTAACGAt < 1:4735798‑M2/21‑1 (MQ=255) gctgctgctATTGGTGGCGGAGCAATTGCTATAGCATCAGTGTTAATCACTtgatcttacccagcaatagt < 1:5289850‑M2/71‑21 (MQ=255) ctgctgctATTGGTGGCGGAGCAATTGCTATAGCATCAGTGTTAATCACTtgatcttacccagcaatagt > 1:477079‑M2/1‑50 (MQ=255) ctgctgctATTGGTGGCGGAGCAATTGCTATAGCATCAGTGTTAATCACTtgatattacccagcaatagtg < 1:1356878‑M2/71‑22 (MQ=255) acaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcaACTGGCCCAAGTGGTAACGATGGt < 1:5025132‑M2/24‑1 (MQ=255) caagaacctcgcttaggcctgtgtccatattacgtgggtaggatcaAc > 1:1476687‑M2/47‑48 (MQ=255) aagaacctcgcttaggcctgtgtccatattacgtgggtaggatcaACTg > 1:1234517‑M2/46‑49 (MQ=255) ctgctATTGGTGGCGGAGCAATTGCTATAGCATCAGTGTTAATCACTtgatcttacccagcaatagtgga < 1:1721044‑M2/70‑24 (MQ=255) agaacctcgcttaggcctgtgtccatattacgtgggtaggatcaACTg < 1:4922898‑M2/4‑1 (MQ=255) gctATTGGTGGCGGAGCAATTGCTATAGCATCAGTGTTAATCACTtgatcttacccagcaatagtggaca < 1:4131754‑M2/70‑26 (MQ=255) aacctcgcttaggcctgtgtccatattacgtgggtaggatcaAc > 1:3096386‑M2/43‑44 (MQ=255) cctcgcttaggcctgtgtccatattacgtgggtaggatcaACTGGCCCAAGTGGTAACGATGGTCTGGAAg < 1:1103504‑M2/31‑1 (MQ=255) tggtggCGGAGCAATTGCTATAGCATCAGTGTTAATCACTtgatcttacccagcaat < 1:4390237‑M2/57‑18 (MQ=255) ggtggCGGAGCAATTGCTATAGCATCAGTGTTAATCACTtgatcttacccagcaatagtggac < 1:3219700‑M2/63‑25 (MQ=255) gcttaggcctgtgtccatattacgtgggtaggatcaACTgg > 1:5326403‑M2/37‑41 (MQ=255) gcttaggcctgtgtccatattacgtgggtaggatcaACTGGCCCAAGTGGTAACGATGGTCTGGAAGgtg < 1:4308125‑M2/34‑1 (MQ=255) gcttaggcctgtgtccatattacgtgggtaggatcaACTGGCCCAAGTGGTAACGATGGTCTGGAAGgt < 1:1788571‑M2/33‑1 (MQ=255) gcttaggcctgtgtccatattacgtgggtaggatcaACTGGCCCAAGTGGTAACGATGGTCTGGAAGgt > 1:465924‑M2/37‑69 (MQ=255) gtggCGGAGCAATTGCTATAGCATCAGTGTTAATCACTtgatcttacccagcaatagtggacacgcggcta > 1:4442665‑M2/1‑38 (MQ=255) tggCGGAGCAATTGCTATAGCATCAGTGTTAATCACTtgatcttacccagcaatagtggacacgcggctaa > 1:2325590‑M2/1‑37 (MQ=255) gCGGAGCAATTGCTATAGCATCAGTGTTAATCACTtgatcttacccagcaatagtggacacgcggctaagt > 1:3123156‑M2/1‑35 (MQ=255) gCGGAGCAATTGCTATAGCATCAGTGTTAATCACTtgatcttacccagcaatagtgga < 1:3339409‑M2/58‑24 (MQ=255) aggcctgtgtccatattacgtgggtaggatcaACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGc > 1:3250017‑M2/33‑71 (MQ=255) ggcctgtgtccatattacgtgggtaggatcaACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGc < 1:3886581‑M2/39‑1 (MQ=255) gcctgtgtccatattacgtgggtaggatcaACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCt < 1:903064‑M2/40‑1 (MQ=255) tgtccatattacgtgggtaggatcaACTGGCCCAAGTGGTAACGATGGTCTGGaa > 1:1932477‑M2/26‑55 (MQ=255) tgtccatattacgtgggtaggatcaACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTAca < 1:3134591‑M2/43‑1 (MQ=255) tgtccatattacgtgggtaggatcaACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGGCAGCTAcatac < 1:4579621‑M2/46‑1 (MQ=255) ttGCTATAGCATCAGTGTTAATCACTtgatcttacccagcaatagtggacac > 1:4596210‑M2/1‑26 (MQ=255) tGCTATAGCATCAGTGTTAATCACTtgatcttacccagcaatagtggacacgcggctaagtgagtaaact > 1:4421701‑M2/1‑25 (MQ=255) ccatattacgtgggtaggatcaACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTAcatacca > 1:4783506‑M2/23‑70 (MQ=255) catattacgtgggtaggatcaACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCa > 1:4632302‑M2/22‑58 (MQ=255) catattacgtgggtaggatcaACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTAcataccata > 1:3402184‑M2/22‑71 (MQ=255) catattacgtgggtaggatcaACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTAcataccata > 1:2534488‑M2/22‑71 (MQ=255) atattacgtgggtaggatcaACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTAcataccata > 1:4210379‑M2/21‑70 (MQ=255) tattacgtgggtaggatcaACTGGCCCAAGTGGTAACGa < 1:1065538‑M2/20‑1 (MQ=255) tattacgtgggtaggatcaACTGGCCCAAGTGGTAACGATGGTCTGGAAGgt > 1:2759868‑M2/20‑52 (MQ=255) tattacgtgggtaggatcaACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTAcataccatac > 1:4666033‑M2/20‑70 (MQ=255) tattacgtgggtaggatcaACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTAcatac < 1:2226854‑M2/46‑1 (MQ=255) attacgtgggtaggatcaACTGGCCCAAGTGGTAACGATGGTCTGGAAg > 1:4474082‑M2/19‑49 (MQ=255) attacgtgggtaggatcaACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTAcataccata > 1:1187782‑M2/19‑68 (MQ=255) taGCATCAGTGTTAATCACTtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagt > 1:4040779‑M2/1‑20 (MQ=255) taGCATCAGTGTTAATCACTtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcag > 1:2464429‑M2/1‑20 (MQ=255) taGCATCAGTGTTAATCACTtgatcttaaccagcaatagt > 1:4086781‑M2/1‑20 (MQ=255) tacgtgggtaggatcaACTGGCCCAAGTGGTAACGATGGTc > 1:5256068‑M2/17‑41 (MQ=255) aGCATCAGTGTTAATCACTtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagt < 1:1535910‑M2/70‑52 (MQ=255) aGCATCAGTGTTAATCACTtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagt < 1:4649209‑M2/70‑52 (MQ=255) aGCATCAGTGTTAATCACTtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagt < 1:3768995‑M2/70‑52 (MQ=255) gCATCAGTGTTAATCACTtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagt < 1:2916925‑M2/69‑52 (MQ=255) cATCAGTGTTAATCACTtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcag > 1:103678‑M2/1‑17 (MQ=255) aTCAGTGTTAATCACTtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtca < 1:3277181‑M2/69‑54 (MQ=255) tgggtaggatcaACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTAca > 1:2307011‑M2/13‑55 (MQ=255) cAGTGTTAATCACTtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagagg < 1:3554582‑M2/71‑58 (MQ=255) aGTGTTAATCACTtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggt > 1:2857370‑M2/1‑13 (MQ=255) aGTGTTAATCACTtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggt < 1:4532807‑M2/71‑59 (MQ=255) aGTGTTAATCACTtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggt > 1:4889149‑M2/1‑13 (MQ=255) gtaggatcaACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACAAAGATAttgt < 1:3927148‑M2/62‑1 (MQ=255) tgtTAATCACTtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtga < 1:598765‑M2/71‑61 (MQ=255) tgtTAATCACTtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtga < 1:2499698‑M2/71‑61 (MQ=255) taggatcaACTGGCCCAAGTGGTAACGATGGTCTGGAAg < 1:77883‑M2/31‑1 (MQ=255) gtTAATCACTtgatcttacccagcaatagtggacacgtggctaagtgagtaaactctcag < 1:388424‑M2/60‑51 (MQ=255) gtTAATCACTtgatcttacccagcaatagtggacacgcggcta > 1:1144896‑M2/1‑10 (MQ=255) aggatcaACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTAcataccat < 1:1986229‑M2/49‑1 (MQ=255) aggatcaACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTAcat > 1:1829919‑M2/8‑51 (MQ=255) ggatcaACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACAAAGATAttgttg > 1:3026984‑M2/7‑70 (MQ=255) gatcaACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACAAAGATAttgttg < 1:806453‑M2/64‑1 (MQ=255) gatcaACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACAAAGATATTGTTGgt < 1:1940603‑M2/66‑1 (MQ=255) gatcaACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACAAAGATATTGTTGgt > 1:1642027‑M2/6‑71 (MQ=255) atcaACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACAAAGATATTGTTGgtg > 1:5212382‑M2/5‑71 (MQ=255) aaTCACTtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactca < 1:2034140‑M2/71‑65 (MQ=255) aaTCACTtgatcttacccagcaatagtggacacgc < 1:3118403‑M2/35‑29 (MQ=255) tcaACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACAAAGATATTGTTGgtg > 1:2340628‑M2/4‑70 (MQ=255) aTCACTtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactca < 1:4170472‑M2/70‑65 (MQ=255) tCACTtgatcttacccagcaatagtggacacgcggctaagtgag < 1:2074893‑M2/44‑40 (MQ=255) aACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTAc < 1:5248800‑M2/42‑1 (MQ=255) aACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACAAAGATATTGTTGGTGTAt > 1:481946‑M2/2‑71 (MQ=255) aCTtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacat > 1:3228654‑M2/1‑3 (MQ=255) aCTtgatcttacccagcaatagtggacacgcggctaagtgagtaaa < 1:3113605‑M2/46‑44 (MQ=255) | TCCATCATTACGAAAAGCCGTTGCTGCTGCTATTGGTGGCGGAGCAATTGCTATAGCATCAGTGTTAATCACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACAAAGATATTGTTGGTGTATG > W3110S.gb/576841‑576981 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |