| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 2173564 | NA (NA) | 89 (1.550) | 47/100 | NT | 100% | pseudogene (307/2041 nt) pseudogene (307/339 nt) |
gatR gatR |
DNA‑binding transcriptional regulator; ECK2083:JW5340+JW2074:b4498 DNA‑binding transcriptional regulator, C‑ter fragment; ECK2083:JW2074:b2090 |
| ? | W3110S.gb | 3920278 = | 0 (0.000) | coding (91/213 nt) | cspA | major cold shock protein | |||||
CAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGGCGCGCTGGCGAG > W3110S.gb/2173499‑2173630 | cAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTc > 1:2008119/1‑70 (MQ=35)cAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCa > 1:5157647/1‑71 (MQ=34)cAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCa > 1:3667735/1‑71 (MQ=34) aGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTc < 1:5107638/69‑1 (MQ=35) aGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCa < 1:4206531/70‑1 (MQ=35) aGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCAt > 1:4745161/1‑71 (MQ=35) aGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCAt < 1:3439652/71‑1 (MQ=35) aaTTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTg < 1:619970/70‑1 (MQ=255) aTTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTc < 1:5272687/66‑1 (MQ=255) aTTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGa < 1:2564331/71‑1 (MQ=255) tttGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGt < 1:34575/67‑1 (MQ=255) tttGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGAt > 1:4215451/1‑71 (MQ=255) ttGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCAt > 1:3423356/1‑58 (MQ=38) tGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCa > 1:4707609/1‑71 (MQ=255) gAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCa < 1:2100474/70‑1 (MQ=255) gAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCAt > 1:4099915/1‑71 (MQ=255) aaaaCAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCAtt < 1:296493/71‑1 (MQ=255) aaaCAAGAACCTCGCTTAGGCCTGTGACCATATTACGTGGGTAGGATCAg > 1:855541/1‑50 (MQ=255) cAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATccc > 1:3903366/1‑54 (MQ=255) cAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTg > 1:3869892/1‑70 (MQ=255) aaGAACCTCGCTTCGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGAc < 1:2368829/71‑1 (MQ=255) aaGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGa < 1:4534487/70‑1 (MQ=255) aaGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGAc < 1:3778367/71‑1 (MQ=255) aGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACt < 1:3421795/71‑1 (MQ=255) gAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATccc < 1:3411832/51‑1 (MQ=255) gAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTg < 1:2806996/71‑1 (MQ=255) cTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCAtttt < 1:4418554/62‑1 (MQ=255) tCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTgg > 1:5298707/1‑53 (MQ=255) tCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTgccgcc > 1:155018/1‑71 (MQ=255) cGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCg < 1:2143510/49‑1 (MQ=255) cGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCt > 1:4647437/1‑71 (MQ=255) gCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTg > 1:3135649/1‑50 (MQ=255) ttAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTgccg < 1:391829/65‑1 (MQ=255) aGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTg > 1:2750011/1‑46 (MQ=255) aGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTg > 1:1009431/1‑46 (MQ=255) aGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTg > 1:829506/1‑46 (MQ=255) aGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTgcg > 1:3998837/1‑69 (MQ=255) gCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCa < 1:3818782/49‑1 (MQ=255) cTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTgcgc > 1:5308759/1‑66 (MQ=255) cTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTc > 1:5115561/1‑71 (MQ=255) tgtgTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCt > 1:942664/1‑71 (MQ=255) tgtCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGa > 1:3461073/1‑50 (MQ=255) tgtCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTa > 1:1453382/1‑65 (MQ=255) tgtCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCt < 1:626540/69‑1 (MQ=255) tgtCCATATTACGTGGGTAGGATCAGTCATCCATTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGt > 1:3531409/1‑71 (MQ=255) gtCCATATTACGTGGGTAGGATCAGTCATCACTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGtt > 1:193254/1‑71 (MQ=255) tCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGa < 1:1209864/48‑1 (MQ=255) tCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGa < 1:1928155/48‑1 (MQ=255) cATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGttttt > 1:4747787/1‑71 (MQ=255) cATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGttttt > 1:262341/1‑71 (MQ=255) cATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGtttt < 1:3819349/70‑1 (MQ=255) cATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGtttt < 1:2561764/70‑1 (MQ=255) tatTACGTGGGTAGGATCAGTCATCCCTTCGTGGAt > 1:970197/1‑36 (MQ=255) tatTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCa < 1:4509281/38‑1 (MQ=255) atTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCAtt < 1:3573769/39‑1 (MQ=255) ttACGTGGGTAGGATCAGTCATCCCTTCGTGGATCAtttt < 1:3394052/40‑1 (MQ=255) ttACGTGGGTAGGATCAGTCATCCCTTCGTGGATCAtt > 1:4760524/1‑38 (MQ=255) tACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGa > 1:4644502/1‑41 (MQ=255) tACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGgc > 1:2381317/1‑70 (MQ=255) aCGTGGGTAGGATCAGTCATCCCTTCGTGGATCAttt > 1:3576882/1‑37 (MQ=255) aCGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTa < 1:3146512/55‑1 (MQ=255) aCGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTa < 1:2610546/55‑1 (MQ=255) gTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGgcgcgc < 1:3755821/71‑1 (MQ=255) tAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGttttt < 1:1406154/58‑1 (MQ=255) tAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGgcgcg < 1:1539671/65‑1 (MQ=255) tAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGgcgcg < 1:1533429/65‑1 (MQ=255) ggATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGGCGCGCTGGCGAg < 1:3369141/71‑1 (MQ=255) | CAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGGCGCGCTGGCGAG > W3110S.gb/2173499‑2173630 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |