| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 2173564 | NA (NA) | 89 (1.550) | 47/100 | NT | 100% | pseudogene (307/2041 nt) pseudogene (307/339 nt) |
gatR gatR |
DNA‑binding transcriptional regulator; ECK2083:JW5340+JW2074:b4498 DNA‑binding transcriptional regulator, C‑ter fragment; ECK2083:JW2074:b2090 |
| ? | W3110S.gb | 3920278 = | 0 (0.000) | coding (91/213 nt) | cspA | major cold shock protein | |||||
Only 100 of 211 total aligned reads displayed.
GTGAAGGACACTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGATA > W3110S.gb/3920208‑3920348 | gcctcagtccggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatca < 1:1727789‑M2/1‑1 (MQ=255)gcctcagtccggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatca < 1:1137712‑M2/1‑1 (MQ=255)gTGAAGGACACTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGaa < 1:2094988/71‑1 (MQ=255) cctcagtccggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatca > 1:943051‑M2/70‑70 (MQ=255) cctcagtccggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatca > 1:4255546‑M2/70‑70 (MQ=255) cctcagtccggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatca > 1:1496766‑M2/70‑70 (MQ=255) tcagtccggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcacac > 1:4730022‑M2/68‑71 (MQ=255) cagtccggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcacact > 1:956335‑M2/67‑70 (MQ=255) agtccggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACAt < 1:1716109‑M2/6‑1 (MQ=255) tccggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACTtcg < 1:647834‑M2/8‑2 (MQ=255) cggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatca > 1:3350876‑M2/62‑62 (MQ=255) cggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACActtcggt < 1:874552‑M2/10‑4 (MQ=255) cggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACActtcggt > 1:182662‑M2/62‑68 (MQ=255) cggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACActtcggt < 1:322044‑M2/10‑4 (MQ=255) cggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCttt < 1:1414664‑M2/10‑1 (MQ=255) acTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtg > 1:2233721‑M2/1‑65 (MQ=255) ggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgttggtaggatcACACATCTTTa < 1:4049435‑M2/11‑1 (MQ=255) cTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatctt > 1:4945806‑M2/1‑64 (MQ=255) acaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTagag > 1:2442385‑M2/58‑71 (MQ=255) caatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGc < 1:3703618‑M2/15‑1 (MQ=255) cTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacc > 1:1482669‑M2/1‑60 (MQ=255) cTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacc > 1:4852385‑M2/1‑60 (MQ=255) tttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCAt > 1:3491602‑M2/54‑71 (MQ=255) aCCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagc > 1:3560382‑M2/1‑57 (MQ=255) ccTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagca > 1:4591208‑M2/1‑56 (MQ=255) ccTTCGTCAAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACt < 1:5224796‑M2/57‑2 (MQ=255) aaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGt < 1:1917026‑M2/21‑1 (MQ=255) cGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaata > 1:253862‑M2/1‑52 (MQ=255) gTCCAGAGATTTGTAAGCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatag > 1:781732‑M2/1‑51 (MQ=255) aacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcacact < 1:310303‑M2/5‑2 (MQ=255) tCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccag > 1:538663‑M2/1‑50 (MQ=255) cAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACt > 1:2729979‑M2/1‑48 (MQ=255) aagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAg < 1:725741‑M2/27‑1 (MQ=255) agagATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACt > 1:3266517‑M2/1‑47 (MQ=255) agaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGt < 1:319166‑M2/28‑1 (MQ=255) gagaTTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggaca > 1:3932991‑M2/1‑46 (MQ=255) agaTTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAaca > 1:3211491/1‑44 (MQ=255) agaTTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAaca > 1:39111/1‑44 (MQ=255) agaTTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacac > 1:4871157‑M2/1‑45 (MQ=255) agaTTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacac > 1:1231498‑M2/1‑45 (MQ=255) aacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTag < 1:105902‑M2/12‑1 (MQ=255) aTTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgc > 1:2830319‑M2/1‑43 (MQ=255) aTTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtga < 1:1948574‑M2/46‑4 (MQ=255) tttGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttaccaagcaatag < 1:3091105‑M2/61‑20 (MQ=255) ctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGt < 1:4338457‑M2/21‑1 (MQ=255) ctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGt < 1:1086648‑M2/21‑1 (MQ=255) tcgcttaggcctgtgtccatattacgtgggtaggatcACACATCttt > 1:3727846‑M2/38‑47 (MQ=255) tGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggc < 1:3413717‑M2/71‑32 (MQ=255) gTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAaca > 1:5129313/1‑38 (MQ=255) cttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGtgatg < 1:4998035‑M2/32‑1 (MQ=255) aCCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaag < 1:1438230‑M2/71‑36 (MQ=255) ccATCGTTCTGGATAGCAGAGAAGTGTACGAACACtga < 1:893630‑M2/38‑4 (MQ=255) aggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCg < 1:3584869‑M2/20‑1 (MQ=255) aggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGAtgaagccc > 1:2225822‑M2/32‑68 (MQ=255) aggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATgaagccg < 1:416569‑M2/38‑1 (MQ=255) aTCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagt < 1:902074‑M2/69‑37 (MQ=255) aTCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaa > 1:61369‑M2/1‑33 (MQ=255) tCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggct > 1:1996356‑M2/1‑32 (MQ=255) cctgtgtccatattacgtgggtaggatcACACATCTTTa < 1:3311720‑M2/11‑1 (MQ=255) ctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCt > 1:1044736‑M2/28‑71 (MQ=255) cGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgag < 1:267659‑M2/70‑40 (MQ=255) tgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCtt > 1:2840136‑M2/27‑71 (MQ=255) tgtccatattacgtgggtaggatcACACATCTTTa > 1:4790077‑M2/25‑35 (MQ=255) tgtccatattacgtgggtaggatcACACATCTTTa > 1:230550‑M2/25‑35 (MQ=255) tgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATgaag > 1:4743838‑M2/25‑59 (MQ=255) tgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATgaag > 1:4570903‑M2/25‑59 (MQ=255) tccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGt < 1:2763457‑M2/48‑1 (MQ=255) ggATAGCAGAGAATTGTACGAACACtgatcttacccagca > 1:806906‑M2/1‑25 (MQ=255) gATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacac > 1:533155‑M2/1‑24 (MQ=255) catattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATgaagccgaag > 1:2809626‑M2/21‑61 (MQ=255) catattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAg > 1:3868871‑M2/21‑71 (MQ=255) tattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGa < 1:2651301‑M2/26‑1 (MQ=255) tattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCg < 1:305542‑M2/53‑1 (MQ=255) tAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactct < 1:446286‑M2/69‑48 (MQ=255) tAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggaca < 1:5093556‑M2/47‑26 (MQ=255) attacgtgggtaggatcACACATCTTTAGAGCCATCGt < 1:1961773‑M2/21‑1 (MQ=255) aGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctc < 1:1322036‑M2/69‑49 (MQ=255) ttacgtgggtatgatcACACATCTTTAGAGCCATCGTCAGGa > 1:4030595‑M2/17‑42 (MQ=255) ttacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATgaagccgaa > 1:2946407‑M2/17‑56 (MQ=255) ttacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGtt < 1:3512328‑M2/55‑1 (MQ=255) cAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaa > 1:4237714‑M2/1‑19 (MQ=255) cAGAGAAGTGTACGAACACtgatcttacccagcaatagtgga > 1:3597045‑M2/1‑19 (MQ=255) agagAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtca > 1:1062033‑M2/1‑18 (MQ=255) agagAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtca > 1:4272444‑M2/1‑18 (MQ=255) cgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGa > 1:3822407‑M2/14‑39 (MQ=255) tgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAAc > 1:4387589‑M2/12‑70 (MQ=255) gggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCa > 1:261188‑M2/11‑71 (MQ=255) aGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggt > 1:3654279‑M2/1‑13 (MQ=255) gtgtACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtg > 1:1000694‑M2/1‑12 (MQ=255) gtgtACGAACACtgatcttacccagcaatagtggacacgcggcta > 1:2118304‑M2/1‑12 (MQ=255) gtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATgaa > 1:4434363‑M2/9‑42 (MQ=255) taggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCAttt < 1:5172405‑M2/64‑1 (MQ=255) aggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTg > 1:858579‑M2/7‑62 (MQ=255) tACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtca > 1:4823283‑M2/1‑9 (MQ=255) tACGAACACtgatcttacccagcaatagtggacacgcggcta > 1:1095565‑M2/1‑9 (MQ=255) ggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGt > 1:1182952‑M2/6‑53 (MQ=255) aCGAACACtgatcttacccagcaatagtggacacg > 1:1603666‑M2/1‑8 (MQ=255) tcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGa > 1:528854‑M2/3‑71 (MQ=255) cACACATCTTTAGAGCCATCGTCAGGAGTGATgaagcc < 1:4879676‑M2/37‑1 (MQ=255) acactgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacat > 1:3134244‑M2/1‑4 (MQ=255) | GTGAAGGACACTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGATA > W3110S.gb/3920208‑3920348 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |