| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 4281328 | 79 (1.350) | 4 (0.080) | 3/90 | NT | 5.3% | coding (268/465 nt) | soxR | DNA‑binding transcriptional dual regulator, Fe‑S center for redox‑sensing |
| ? | W3110S.gb | = 4281339 | 73 (1.410) | coding (279/465 nt) | soxR | DNA‑binding transcriptional dual regulator, Fe‑S center for redox‑sensing | |||||
Only 100 of 123 total aligned reads displayed.
GCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCGAGAAGAGTTGGATCGGCGCATTCATACCTTAGTGGCGCTGC > W3110S.gb/4281260‑4281397 | gCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAaga < 1:2947013/70‑1 (MQ=255)gCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAaga > 1:3543846/1‑70 (MQ=255) aTTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTTTTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTg < 1:3308547/71‑1 (MQ=255) aTTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTg < 1:2494111/71‑1 (MQ=255) ccGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGa < 1:2196230/70‑1 (MQ=255) ccGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGa < 1:3098364/70‑1 (MQ=255) cGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGaa < 1:1869512/70‑1 (MQ=255) gCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGaaa > 1:4407799/1‑70 (MQ=255) cTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGaaa > 1:2068824/1‑69 (MQ=255) cTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGaaa > 1:4373325/1‑69 (MQ=255) cTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGaaa > 1:5286184/1‑69 (MQ=255) cTGACGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGaaa > 1:217033/1‑69 (MQ=255) tGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAg > 1:2613248/1‑71 (MQ=255) tGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAg > 1:1505254/1‑71 (MQ=255) gCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAg < 1:1831527/69‑1 (MQ=255) gCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGct > 1:3082408‑M2/1‑69 (MQ=255) cGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGctt > 1:492280‑M2/1‑68 (MQ=255) gACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAAc < 1:1130090/65‑1 (MQ=255) gACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGcttt > 1:3568794‑M2/1‑67 (MQ=255) gACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGct > 1:440625‑M2/1‑67 (MQ=255) aCCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGctgtttccactctttc < 1:51071‑M1/71‑17 (MQ=255) aCCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGctttc > 1:581689‑M2/1‑66 (MQ=255) ccATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGctttcg < 1:190806‑M2/71‑7 (MQ=255) cATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGt > 1:31698/1‑71 (MQ=255) ttGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGt > 1:1528281/1‑69 (MQ=255) ggTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTccc > 1:2535050/1‑70 (MQ=255) ggTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTccc < 1:1821356/70‑1 (MQ=255) gTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGctgtttccactct < 1:2897457‑M1/61‑14 (MQ=255) gTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCaa < 1:685112/71‑1 (MQ=255) tGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAAt < 1:3068452/71‑1 (MQ=255) gAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATg > 1:2730523/1‑71 (MQ=255) aaGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGa < 1:1673296/51‑1 (MQ=255) aaGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATg > 1:556183/1‑70 (MQ=255) gCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGctgtttccactctttc > 1:1001551‑M1/1‑43 (MQ=255) gCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCg < 1:5155587/71‑1 (MQ=255) gCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCg < 1:3095298/71‑1 (MQ=255) gTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGc > 1:2443105/1‑68 (MQ=255) tttGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTg < 1:5348645/44‑1 (MQ=255) tttGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCg < 1:2943444/68‑1 (MQ=255) ggCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCGagaag < 1:5199839/70‑1 (MQ=255) gCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCGagaaga < 1:3898449/70‑1 (MQ=255) gtgtTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCGAGAAGAGtt < 1:5232614/71‑1 (MQ=255) tgtTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCGAGAAGAGTTg < 1:1867541/71‑1 (MQ=255) gtTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGaaa > 1:2280551/1‑40 (MQ=255) gtTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAg > 1:3624877/1‑43 (MQ=255) gtTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCGAGAAGAGTTg > 1:5059337/1‑70 (MQ=255) ttGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGc < 1:899323/58‑1 (MQ=255) ttGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCGAGAAGAGTTgg < 1:2021454/70‑1 (MQ=255) cccGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCGAGAAGAGTTGGATCg > 1:5081338/1‑71 (MQ=255) cccGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCGAGAAGAGCTGGATCg > 1:857977/1‑71 (MQ=255) ccGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCaa < 1:4912100/50‑1 (MQ=255) ccGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCgag < 1:750982/57‑1 (MQ=255) cGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATg > 1:1069408/1‑51 (MQ=255) cGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCga > 1:494599/1‑55 (MQ=255) cGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCGagaa > 1:2992796/1‑58 (MQ=255) cGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCGagaa > 1:550992/1‑58 (MQ=255) cGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCGAGAAGAGTTGGATCGgc > 1:4451051/1‑71 (MQ=255) gAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGctt < 1:5348831‑M2/39‑4 (MQ=255) aaGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCGAGAAGAGTTgg < 1:3741094/63‑1 (MQ=255) aaGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCGAGAAGAGTTgg < 1:4700807/63‑1 (MQ=255) aaGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCGAGAAGAGTTGGATCGgcg > 1:4635967/1‑70 (MQ=255) ggCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCGAGAAGAGTTGGATCGGCGCAtt < 1:4656639/71‑1 (MQ=255) ggCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCGAGAAGAGTTGGATCGGCGCAt < 1:4241795/70‑1 (MQ=255) gCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCGAGAAGAGTTGGATCGGCGCAtt < 1:4212707/70‑1 (MQ=255) cATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCGAGAAGAGTTGGATCGGCGCATTCa > 1:3028471/1‑71 (MQ=255) aTACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCGAGAAGAGTTGGATCGgc > 1:4654130/1‑63 (MQ=255) aTACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCGAGAAGAGTTGGATCGGCGCATTCAt < 1:3679914/71‑1 (MQ=255) tACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCGAGAAGAGTTGGATCGGCGCATTCa < 1:4310637/69‑1 (MQ=255) aCGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCGAGAAGAGTTGGATCGGCGCATTCATAc > 1:2098687/1‑71 (MQ=255) cGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCaa > 1:487683/1‑38 (MQ=255) cGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCGAGAAGAGTTGGATCGGCGCATTCATAcc > 1:2521279/1‑71 (MQ=255) gTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCGAGAAGAGTTGGATCGGCGCATTCATACCt > 1:1143336/1‑71 (MQ=255) tAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCGAGAAGAGt > 1:401372/1‑48 (MQ=255) aaGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCGAGAAGAGTTGGATCGGCGCATTCATACCTTAg > 1:3179908/1‑71 (MQ=255) aGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCGAGAAGAGTTGGATCGGCGCATTCATACCTTAGt < 1:1956547/71‑1 (MQ=255) gTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCGAGAAGAGTTGGATCGGCGCAtt < 1:5070972/59‑1 (MQ=255) gTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCGAGAAGAGTTGGATCGGCGCATTCATa > 1:5127208/1‑63 (MQ=255) tGCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCgag < 1:2908921/38‑1 (MQ=255) gCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCGAGAAGAGTTg > 1:5180763/1‑45 (MQ=255) gCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCGAGAAGAGTTGGATCGGCGCATTCATACCtt < 1:5292531/65‑1 (MQ=255) cGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCGAGAAGAGTTGGATCGGCGCATTCATACCTTAGTGgcg > 1:2861974/1‑71 (MQ=255) gAAAGctgtttccactctttcgcacttaacgtatgcccttcgggcaacacgccaaacgcttcaccaatggt > 1:581689‑M1/1‑5 (MQ=255) gAAAGAGTGGAAACAGctttcgcacttaacgtatgcccttcgggcaacacgccaaacgcttcaccaatggt < 1:51071‑M2/71‑56 (MQ=255) gAAAGAGTGGAAACAGctttcgcacttaacgtatgcccttcgggcaacacgccaaacgc > 1:1001551‑M2/1‑16 (MQ=255) aaaGctgtttccactctttcgcacttaacgtatgcccttcgggcaacacgccaaacgcttcaccaatggtc > 1:3568794‑M1/1‑4 (MQ=255) aaaGAGTGGAAACAGCTTTCGTCCCAATGGCGAGAAGAGTTGGATCGGCGCATTCATACCTTAGTGGCGCt > 1:4793599/1‑71 (MQ=255) aaaGAGTGGAAACAGCTTTCGTCCCAATGGCGAGAAGAGTTGGATCGGCGCATTCATACCTTAGTGGCGCt < 1:4805045/71‑1 (MQ=255) aaGctgtttccactctttcgcacttaacgtatgcccttcgg < 1:2806722‑M1/41‑39 (MQ=255) aaGctgtttccactctttcgcacttaacgtatgcccttc < 1:5348831‑M1/39‑37 (MQ=255) aaGAGTGGAAACAGCTTTCGTCCCAATGGCGAGAAGAGTTGGATCGGCGCATTCAt < 1:1289551/56‑1 (MQ=255) aaGAGTGGAAACAGCTTTCGTCCCAATGGCGAGAAGAGTTGGATCGGCGCATTCATACCTTAGTGGCGCTg > 1:3974502/1‑71 (MQ=255) agagTGGAAACAGctttcgcacttaacgtatgcccttcgggcaacacgccaaacgcttcac < 1:2897457‑M2/61‑49 (MQ=255) agagTGGAAACAGctttcgcacttaacgtatgcccttcgggcaac < 1:2316943‑M2/45‑33 (MQ=255) agagTGGAAACAGCTTTCGTCCCAATGGCGAGAAGAGTTGGATCGGCGCATTCATACCTTAGt > 1:2597678/1‑63 (MQ=255) agagTGGAAACAGCTTTCGTCCCAATGGCGAGAAGAGTTGGATCGGCGCATTCATACCTTAGTGgc > 1:5205682/1‑66 (MQ=255) agagTGGAAACAGCTTTCGTCCCAATGGCGAGAAGAGTTGGATCGGCGCATTCATACCTTAGTGGCGCTGc > 1:4350739/1‑71 (MQ=255) aGctgtttccactctttcgcacttaacgtatgcccttcgggcaacacgccaaacgcttcaccaatggtcgc > 1:1619939‑M1/1‑2 (MQ=255) aGctgtttccactctttcgcacttaacgtatgcccttcgggcaacacgccaaacgcttcaccaatggtcgc > 1:3082408‑M1/1‑2 (MQ=255) aGctgtttccactctttcgcacttaacgtatgcccttcgggcaacacgccaaacgcttcaccaatggtc > 1:440625‑M1/1‑2 (MQ=255) gctgtttccactctttcgcacttaacgtatgcccttcgggcaacacgccaaacgcttcaccaatggtcgc > 1:3445851‑M1/1‑1 (MQ=255) | GCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCGAGAAGAGTTGGATCGGCGCATTCATACCTTAGTGGCGCTGC > W3110S.gb/4281260‑4281397 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |