| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 4281328 | 79 (1.350) | 4 (0.080) | 3/90 | NT | 5.3% | coding (268/465 nt) | soxR | DNA‑binding transcriptional dual regulator, Fe‑S center for redox‑sensing |
| ? | W3110S.gb | = 4281339 | 73 (1.410) | coding (279/465 nt) | soxR | DNA‑binding transcriptional dual regulator, Fe‑S center for redox‑sensing | |||||
TGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCGAGAAGAGTTGGATCGGCGCATTCATACCTTAGTGGCGCTGCGTGACGAACTG > W3110S.gb/4281269‑4281408 | tGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAg > 1:2613248/1‑71 (MQ=255)tGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAg > 1:1505254/1‑71 (MQ=255) gCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAg < 1:1831527/69‑1 (MQ=255) gCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGct > 1:1619939‑M2/1‑69 (MQ=255) gCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGct > 1:3082408‑M2/1‑69 (MQ=255) gCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGc > 1:3445851‑M2/1‑69 (MQ=255) cGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGctt > 1:492280‑M2/1‑68 (MQ=255) gACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGcttt > 1:3568794‑M2/1‑67 (MQ=255) gACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGct > 1:440625‑M2/1‑67 (MQ=255) aCCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGctttc > 1:581689‑M2/1‑66 (MQ=255) ccATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGctttcg < 1:190806‑M2/71‑7 (MQ=255) cATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGt > 1:31698/1‑71 (MQ=255) ttGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGt > 1:1528281/1‑69 (MQ=255) ttGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCG‑AAGAGTGGAAACAGCTTTCGTcc > 1:4369805/1‑70 (MQ=255) ggTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTccc < 1:1821356/70‑1 (MQ=255) ggTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTccc > 1:2535050/1‑70 (MQ=255) gTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCaa < 1:685112/71‑1 (MQ=255) tGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAAt < 1:4025565/71‑1 (MQ=255) tGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAAt < 1:3068452/71‑1 (MQ=255) gAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATg > 1:2730523/1‑71 (MQ=255) aaGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATg > 1:556183/1‑70 (MQ=255) gCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCg < 1:3095298/71‑1 (MQ=255) gCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCg < 1:5155587/71‑1 (MQ=255) gTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGc > 1:2443105/1‑68 (MQ=255) tttGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCg < 1:2943444/68‑1 (MQ=255) ggCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCGagaag < 1:5199839/70‑1 (MQ=255) gCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCGagaaga < 1:3898449/70‑1 (MQ=255) gtgtTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCGAGAAGAGtt < 1:5232614/71‑1 (MQ=255) tgtTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCGAGAAGAGTTg > 1:2583025/1‑71 (MQ=255) tgtTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCGAGAAGAGTTg < 1:1867541/71‑1 (MQ=255) gtTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAg > 1:3624877/1‑43 (MQ=255) gtTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCGAGAAGAGTTg > 1:5059337/1‑70 (MQ=255) ttGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGc < 1:899323/58‑1 (MQ=255) ttGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCGAGAAGAGTTgg < 1:2021454/70‑1 (MQ=255) tGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCGAGAAGAGTTGGa < 1:3701859/70‑1 (MQ=255) cccGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCGAGAAGAGTTGGATCg > 1:5081338/1‑71 (MQ=255) cccGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCGAGAAGAGTTGGATCg > 1:3155860/1‑71 (MQ=255) cccGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCGAGAAGAGCTGGATCg > 1:857977/1‑71 (MQ=255) ccGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGctt < 1:2806722‑M2/41‑4 (MQ=255) ccGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTcc < 1:683775/47‑1 (MQ=255) ccGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCaa < 1:4912100/50‑1 (MQ=255) ccGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCgag < 1:750982/57‑1 (MQ=255) cGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATg > 1:3081186/1‑51 (MQ=255) cGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATg > 1:1069408/1‑51 (MQ=255) cGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCga > 1:494599/1‑55 (MQ=255) cGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCGagaa > 1:550992/1‑58 (MQ=255) cGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCGagaa > 1:2992796/1‑58 (MQ=255) cGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCGAGAAGAGTTGGATCGgc > 1:4451051/1‑71 (MQ=255) gAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGctt < 1:5348831‑M2/39‑4 (MQ=255) aaGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCGAGAAGAGTTgg < 1:3741094/63‑1 (MQ=255) aaGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCGAGAAGAGTTgg < 1:4700807/63‑1 (MQ=255) aaGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCGAGAAGAGTTGGATCGgcg > 1:4635967/1‑70 (MQ=255) ggCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCGAGAAGAGTTGGATCGGCGCAtt < 1:4656639/71‑1 (MQ=255) ggCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCGAGAAGAGTTGGATCGGCGCAt < 1:4241795/70‑1 (MQ=255) gCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCGAGAAGAGTTGGATCGGCGCAtt < 1:4212707/70‑1 (MQ=255) cATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCGAGAAGAGTTGGATCGGCGCATTCa > 1:3028471/1‑71 (MQ=255) aTACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCGAGAAGAGTTGGATCGgc > 1:4654130/1‑63 (MQ=255) aTACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCGAGAAGAGTTGGATCGGCGCATTCAt < 1:3679914/71‑1 (MQ=255) tACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCGAGAAGAGTTGGATCGGCGCATTCa < 1:4310637/69‑1 (MQ=255) tACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCGAGAAGAGTTGGATCGGCGCATTCATa > 1:1215617/1‑71 (MQ=255) aCGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCGagaag < 1:5247201/49‑1 (MQ=255) aCGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCGAGAAGAGTTGGATCGGCGCATTCATAc > 1:2098687/1‑71 (MQ=255) cGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCaa > 1:487683/1‑38 (MQ=255) cGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATg > 1:5176331/1‑40 (MQ=255) cGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCGAGAAGAGTTGGATCGGCGCATTCATAcc > 1:2521279/1‑71 (MQ=255) gTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCGAGAAGAGTTGGATCGGCGCATTCATACCt > 1:1143336/1‑71 (MQ=255) tAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCGAGAAGAGt > 1:401372/1‑48 (MQ=255) aaGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCGAGAAGAGTTGGATCGGCGCATTCATACCTTAg > 1:3179908/1‑71 (MQ=255) aGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCGAGAAGAGTTGGATCGGCGCATTCATACCTTAg < 1:2091935/70‑1 (MQ=255) aGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCGAGAAGAGTTGGATCGGCGCATTCATACCTTAGt < 1:1956547/71‑1 (MQ=255) gTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCGAGAAGAGTTGGATCGGCGCAtt < 1:5070972/59‑1 (MQ=255) gTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCGAGAAGAGTTGGATCGGCGCATTCATa > 1:5127208/1‑63 (MQ=255) tGCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCgag < 1:2908921/38‑1 (MQ=255) gCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCGAGAAGAGTTg > 1:5180763/1‑45 (MQ=255) gCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCGAGAAGAGTTGGATCGGCGCATTCATACCtt < 1:5292531/65‑1 (MQ=255) cGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCGAGAAGAGTTGGATCGGCGCATTCATACCTTAGTGgcg > 1:2861974/1‑71 (MQ=255) cGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCGAGAAGAGTTGGATCGGCGCATTCATACCTTAGTGgc < 1:5097972/70‑1 (MQ=255) gAAAGAGTGGAAACAGctttcgcacttaacgtatgcccttcgggcaacacgccaaacgcttcaccaatggt < 1:51071‑M2/71‑56 (MQ=255) gAAAGAGTGGAAACAGctttcgcacttaacgtatgcccttcgggcaacacgccaaacgc > 1:1001551‑M2/1‑16 (MQ=255) aaaGAGTGGAAACAGCTTTCGTCCCAATGGCGAGAAGAGTTGGATCGGCGCATTCATACCTTAGTGGCGCt < 1:4805045/71‑1 (MQ=255) aaaGAGTGGAAACAGCTTTCGTCCCAATGGCGAGAAGAGTTGGATCGGCGCATTCATACCTTAGTGGCGCt > 1:4793599/1‑71 (MQ=255) aaGAGTGGAAACAGCTTTCGTCCCAATGGCGAGAAGAGTTGGATCGGCGCATTCAt < 1:1289551/56‑1 (MQ=255) aaGAGTGGAAACAGCTTTCGTCCCAATGGCGAGAAGAGTTGGATCGGCGCATTCATACCTTAGTGGCGCTg < 1:938238/71‑1 (MQ=255) aaGAGTGGAAACAGCTTTCGTCCCAATGGCGAGAAGAGTTGGATCGGCGCATTCATACCTTAGTGGCGCTg > 1:3974502/1‑71 (MQ=255) agagTGGAAACAGctttcgcacttaacgtatgcccttcgggcaacacgccaaacgcttcac < 1:2897457‑M2/61‑49 (MQ=255) agagTGGAAACAGctttcgcacttaacgtatgcccttcgggcaac < 1:2316943‑M2/45‑33 (MQ=255) agagTGGAAACAGCTTTCGTCCCAATGGCGAGAAGAGTTGGATCGGCGCATTCATACCTTAGt > 1:2597678/1‑63 (MQ=255) agagTGGAAACAGCTTTCGTCCCAATGGCGAGAAGAGTTGGATCGGCGCATTCATACCTTAGTGgc > 1:5205682/1‑66 (MQ=255) agagTGGAAACAGCTTTCGTCCCAATGGCGAGAAGAGTTGGATCGGCGCATTCATACCTTAGTGGCGCTGc > 1:4350739/1‑71 (MQ=255) gTGGAAACAGCTTTCGTCCCAATGGCGAGAAGAGTTGGATCGGCGCATTCATACCTTAGTGGCGCTGCGt > 1:211176/1‑70 (MQ=255) gTGGAAACAGCTTTCGTCCCAATGGCGAGAAGAGTTGGATCGGCGCATTCATACCTTAGTGGCGCTGCGt < 1:4080748/70‑1 (MQ=255) tGGAAACAGCTTTCGTCCCAATGGCGAGAAGAGTTg < 1:3155315/36‑1 (MQ=255) tGGAAACAGCTTTCGTCCCAATGGCGAGAAGAGTTGGATCGGCGCATTCATAc < 1:4698316/53‑1 (MQ=255) tGGAAACAGCTTTCGTCCCAATGGCGAGAAGAGTTGGATCGGCGCATTCATAc < 1:4407830/53‑1 (MQ=255) ggAAAAAGCTTTCGTCCCAATGGCGAGAAGAGTTg > 1:3340942/1‑35 (MQ=255) gAAACAGCTTTCGTCCCAATGGCGAGAAGAGTTGGATCGGCGCATTCATACCTTAGTGGCGCTGCGTGACg < 1:2109033/71‑1 (MQ=255) aaaCAGCTTTCGTCCCAATGGCGAGAAGAGTTGGATCGGCGCATTCATACCTTAGTGGCGCTGCGTGACg > 1:2163103/1‑70 (MQ=255) cAGCTTTCGTCCCAATGGCGAGAAGAGTTGGATCGGCGCATTCATACCTTAGTg < 1:3226967/54‑1 (MQ=255) aGCTTTCGTCCCAATGGCGAGAAGAGTTGGATCGGCGCAtt < 1:2912769/41‑1 (MQ=255) aGCTTTCGTCCCAATCGCGAGAAGAGTTGGATCGGCGCATTCATACCTTAGTGGCGCTGCGTGACGAACTg < 1:4891426/71‑1 (MQ=255) | TGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCGAGAAGAGTTGGATCGGCGCATTCATACCTTAGTGGCGCTGCGTGACGAACTG > W3110S.gb/4281269‑4281408 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |