| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 7063 | 64 (1.090) | 18 (0.330) +GATT |
11/94 | NT | 35.2% | coding (897/1431 nt) | yaaJ | predicted transporter |
| ? | W3110S.gb | = 2564144 | 8 (0.140) | coding (1397/1404 nt) | eutA | reactivating factor for ethanolamine ammonia lyase | |||||
ACATCCTTAAACTGATATACATTGCCGAACAATGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCAAAAAGAGGCGTACCAATGTCGATATA > W3110S.gb/2564076‑2564214 | aCATCCTTAAACTGATATACATTGCCGAACAATGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGa > 1:5255829‑M2/1‑69 (MQ=255) tCCTTAAACTGATATACATTGCCGAACAATGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGaatc > 1:292708‑M2/1‑66 (MQ=255) ccTTAAACTGAAATACATTGCCGAACAATGTGGTCTTTAGTTTAATAAGTCGTTCACTCaggaag > 1:4148394/1‑65 (MQ=255) cTTAAACTGATATACATTGCCGAACAATGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGaatcgat > 1:87656‑M2/1‑64 (MQ=255) aaaCTGATATACATTGCCGAACAATGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGaatcgatga > 1:633975‑M2/1‑61 (MQ=255) aaCTGATATACATTGCCGAACAATGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGaatcgatgat > 1:835914‑M2/1‑60 (MQ=255) cTGATATACATTGCCGAACAATGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGaatcgatgattgg < 1:2215648‑M2/71‑14 (MQ=255) tGATATACATTGCCGAACAATGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGaatcgatga > 1:3671482‑M2/1‑57 (MQ=255) gATATACATTGCCGAACAATGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGaatcgatgattggca < 1:451429‑M2/71‑16 (MQ=255) tataCATTGCCGAACAATGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGaatcgatgattggca > 1:3642118‑M2/1‑54 (MQ=255) taCATTGCCGAACAATGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGaatcgatgattggcatttt < 1:1194575‑M2/71‑20 (MQ=255) taCATTGCCGAACAATGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGaa > 1:405371‑M2/1‑52 (MQ=255) cATTGCCGAACAATGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGaatcgatgattggcatttttc > 1:3962971‑M2/1‑50 (MQ=255) cATTGCCGAACAATGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGaatcgatgattggcattttt < 1:4013627‑M2/70‑21 (MQ=255) cATTGCCGAACAATGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGaatcgatgattggcattttt < 1:4558656‑M2/70‑21 (MQ=255) aTTGCCGAACAATGTGGTCTTTAGTTTCTTAAGTCGTTCCCTCAGGAAGaatcgatg > 1:3130864‑M2/1‑49 (MQ=255) ttGCCGAACAATGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGaatcgatgattggcatttttcac > 1:960541‑M2/1‑48 (MQ=255) ttGCCGAACAATGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGaatcgatgattggcatttttca < 1:2795089‑M2/70‑23 (MQ=255) tGCCGAACAATGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGaatcgatgattggcatttttca < 1:4368924‑M2/69‑23 (MQ=255) aCAATGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGaatcgatgattggcattttt < 1:1286982‑M2/61‑21 (MQ=255) tgGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGaatcgatgatt < 1:1132805‑M2/46‑12 (MQ=255) tttAGTTTCATAAGTCGTTCCCTCAGGAAGaatcgatgattggcatttt > 1:2311685‑M2/1‑30 (MQ=255) tttAGTTTCATAAGTCGTTCCCTCAGGAAGaatcgat > 1:1104213‑M2/1‑30 (MQ=255) ttAGTTTCATAAGTCGTTCCCTCAGGAAGaatcgatgatt < 1:5179534‑M2/40‑12 (MQ=255) tCATAAGTCGTTCCCTCAGGAAGaatcgatgattggcatttttca < 1:598461‑M2/45‑23 (MQ=255) aGTCGTTCCCTCAGGAAGaatcgatgattggcatt < 1:2245501‑M2/35‑18 (MQ=255) aGTCGTTCCCTCAGGAAGaagcgatgattggcatt < 1:4245912‑M2/35‑18 (MQ=255) cattCAGGAAGGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCAAAAAGAGGCGTACCaa > 1:4309483/4‑71 (MQ=255) cattCAGGAAGGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCAAAAAGAGGCGTACCaa > 1:1681063/4‑71 (MQ=255) attCAGGAAGGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCAAAAAGAGGCGTACCAAt < 1:1549743/69‑1 (MQ=255) ttCAGGAAGGAAATGCGAGTGATTTCATCGTCACCGGCACAACCGATCCGCCAAAAAGAGGCGTACCAATg < 1:639370/70‑1 (MQ=255) tCAGGAAGGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCAAAAAGAGGCGTACCAATGt > 1:2919642/1‑71 (MQ=255) cAGGAAGGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCAAAAAGAGGCGTACCAATGt < 1:1338739/70‑1 (MQ=255) aggaaggaAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCAAAAAGAGGCGTACCAATGTc < 1:336885/70‑1 (MQ=255) aggaaggaAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCAAAAAGAGGCGTACCAATGTCg < 1:4260384/71‑1 (MQ=255) aggaaATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCAAAAAGAGGCGt < 1:2885508/57‑1 (MQ=255) ggaaATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCaaaaa < 1:2683330/49‑1 (MQ=255) ggaaATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCAAAAAGAGGCGTACCAATGTCGAtata < 1:5077719/71‑1 (MQ=255) | ACATCCTTAAACTGATATACATTGCCGAACAATGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCAAAAAGAGGCGTACCAATGTCGATATA > W3110S.gb/2564076‑2564214 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |