| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 713380 = | 48 (0.820) | 29 (0.540) | 24/94 | NT | 39.9% | intergenic (‑156/‑29) | ybfF/seqA | conserved hypothetical protein/regulatory protein for replication initiation |
| ? | W3110S.gb | = 4125340 | 43 (0.800) | coding (836/837 nt) | dam | DNA adenine methylase | |||||
GGCACACGTAAAAAGGTGGACGAACTGCTGGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAATTCTCAAGGAGAAGCGGATGAAACAGTATTTGATTGCCCCCTCAATTCTGTCGGCTGATTTTGCCCGCC > W3110S.gb/4125270‑4125410 | ggcACACGTAAAAAGGTGGACGAACTGCTGGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAaata < 1:4797208/71‑1 (MQ=255) acGTAAAAAGGTGGACGAACTGCTGGCTTTGTACAAACCAGGAGTCGTTTCACCCGGGAAAAAATAATtct > 1:3915056/1‑71 (MQ=255) acGTAAAAAGGTGGACGAACTGCTGGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAat < 1:3551644‑M2/68‑3 (MQ=255) acGTAAAAAGGTGGACGAACTGCTGGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAATtct > 1:2482443/1‑71 (MQ=255) acGTAAAAAGGTGGACGAACTGCTGGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAATtct > 1:2475832/1‑71 (MQ=255) cGTAAAAAGGTGGACGAACTGCTGGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAATtctc < 1:3228480/71‑1 (MQ=255) gTAAAAAGGTGGACGAACTGCTGGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAattcagc < 1:5204060‑M2/71‑8 (MQ=255) gTAAAAAGGTGGACGAACTGCTGGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAattcagc < 1:2119431‑M2/71‑8 (MQ=255) gTAAAAAGGTGGACGAACTGCTGGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAATtctc > 1:415217/1‑70 (MQ=255) gTAAAAAGGTGGACGAACTGCTGGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAATTCTCa < 1:2236565/71‑1 (MQ=255) tAAAAAGGTGGACGAACTGCTGGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAattcagct > 1:3703240‑M2/1‑63 (MQ=255) aaaaGGTGGACGAACTGCTGGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAattcagct < 1:3290803‑M2/69‑9 (MQ=255) aaGGTGGACGAACTGCTGGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAattcagctaaga < 1:3139094‑M2/71‑13 (MQ=255) aaGGTGGACGAACTGCTGGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAATTCTCAAg > 1:113972/1‑68 (MQ=255) ggTGGACGAACTGCTGGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAattcagctaagac < 1:390533‑M2/70‑14 (MQ=255) gACGAACTGCTGGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAATTCTCAAGGAGAAGCg > 1:5198890/1‑70 (MQ=255) aCGAACTGCTGGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAattcagctaagacactgca < 1:1588534‑M2/71‑20 (MQ=255) aCTGCTGGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAATTCTCAAGGAGAAGCGGATGa < 1:3480544/70‑1 (MQ=255) ctgctgGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAATTCTCAAGGAGAAGCGGATGaaa > 1:3659003/1‑71 (MQ=255) tgctgGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAattcagctaagacactgcactggat < 1:1208270‑M2/71‑26 (MQ=255) tgctgGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAattcagctaagacactgcactggat < 1:1371670‑M2/71‑26 (MQ=255) tgctgGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAATTCTCAAg > 1:3973639/1‑55 (MQ=255) gctgGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAattcagctaagacactgcactggat < 1:4484661‑M2/70‑26 (MQ=255) ctgGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAattcagctaagacactgcactggatt > 1:2735408‑M2/1‑44 (MQ=255) tgGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAATTCTCAAGGAGAAGCGGATGAAACa > 1:213246/1‑69 (MQ=255) ggCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAa > 1:402559‑M2/1‑42 (MQ=255) ggCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAATTCTCAAGGAGAAGCGGATGAAACAGTa > 1:5037410/1‑71 (MQ=255) ggCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAATTCTCAAGGAGAAGCGGATGAAACAGTa > 1:5184531/1‑71 (MQ=255) gCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAattcagctaagacac > 1:1981099‑M2/1‑41 (MQ=255) gCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAATTCTCAAGGAGAAGCGGATGAAACAGTAt > 1:2466436/1‑71 (MQ=255) gCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAATTCTCAAGGAGAAGCGGATGAAACAGTAt < 1:595673/71‑1 (MQ=255) gcttGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAATTCTCAAGGAGAAGCGGAt < 1:999004/58‑1 (MQ=255) cTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAattcagctaagacac > 1:4797192‑M2/1‑40 (MQ=255) cTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAATTCTCAAGGAGAAGCGGATGAAACAGTAtt < 1:3709908/71‑1 (MQ=255) tttGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAattcagcta > 1:1446726‑M2/1‑39 (MQ=255) ttGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAattcagctaagacactgcactggattaagatg < 1:5150680‑M2/70‑33 (MQ=255) tGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAattcagctaagacactgcactggattaagatg > 1:1400339‑M2/1‑37 (MQ=255) tGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAATTCTCAAGGAGAAGCGGATGAAACAGTATTTg < 1:5366088/70‑1 (MQ=255) tGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAATTCTCAAGGAGAAGCGGATGAAACAGTATTTGa > 1:3303170/1‑71 (MQ=255) gTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAattcagctaagacactgcactggattaagatgaa > 1:4364125‑M2/1‑36 (MQ=255) gTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAATTCTCAAGGAGAAGCGGATGAAACAGTATTTGa < 1:3286253/70‑1 (MQ=255) cAAACCAGGAGTCGTTTCACCCGCGAAAAAATAattcagttaagacactgcactggattaagatgaaaac > 1:4414262‑M2/1‑33 (MQ=255) cAAACCAGGAGTCGTTTCACCCGCGAAAAAATAattcagctaagacactgcactggattaagatgaaa < 1:1343226‑M2/68‑36 (MQ=255) aaaCCAGGAGTCGTTTCACCCGCGAAAAAATAattcagctaagacactgcac > 1:1656125‑M2/1‑32 (MQ=255) aaCCAGGAGTCGTTTCACCCGCGAAAAAATAattcagctaagacactgcactggattaagatgaaaacgat < 1:2760939‑M2/71‑41 (MQ=255) ccAGGAGTCGTTTCACCCGCGAAAAAATAattcagctaa > 1:5285955‑M2/1‑29 (MQ=255) ccAGGAGTCGTTTCACCCGCGAAAAAATAATTCTCAAGGAGAAGCGGATGAAACAGTATTTGATTGccccc > 1:3935101/1‑71 (MQ=255) aGGAGTCGTTTCACCCGCGAAAAAATAATTCTCAAGGAGAAGCGGATGAAACAGTATTTGATTGCCCCCt > 1:2674017/1‑70 (MQ=255) aGGAGTCCTTTCACCCGCGAAAAAATAATTCTCAAGGAGAAGCGGa > 1:3503957/1‑46 (MQ=255) gAGTCGTTTCACCCGCGAAAAAATAATTCTCAAGGAGAAGCGGATGAAACAGTATTTGATTGCCCCCTCaa < 1:3280442/71‑1 (MQ=255) aGTCGTTTCACCCGCGAAAAAATAATTCTCAAGGAGAAGCGGATGAAACAGTATTTGATTGCCCCCTc < 1:46710/68‑1 (MQ=255) aGTCGTTTCACCCGCGAAAAAATAATTCTCAAGGAGAAGCGGATGAAACAGTATTTGATTGCCCCCTCaa < 1:4733996/70‑1 (MQ=255) gTCGTTTCACCCGCGAAAAAATAattcagctaagacactgcactggattaagatgaaaacgatttaagttg > 1:684620‑M2/1‑23 (MQ=255) gTCGTTTCACCCGCGAAAAAATAATTCTCAAGGAGAAGCGGATGAAACAGTa > 1:2917262/1‑52 (MQ=255) cGTTTCACCCGCGAAAAAATAATTCTCAAGGAGAAGCGGATGAAACAGTATTTGATTGcccc > 1:1877261/1‑62 (MQ=255) cGTTTCACCCGCGAAAAAATAATTCTCAAGGAGAAGCGGATGAAACAGTATTTGATTGCCCCCTCAATTCt > 1:2743279/1‑71 (MQ=255) gTTTCACCCGCGAAAAAATAattcagctaagacactgcactggattaagatgaaaacgattgaagttgat < 1:854174‑M2/70‑51 (MQ=255) gTTTCACCCGCGAAAAAATAATTCTCAAGGAGAAGCGGATGAAACAGTATTTGAt > 1:3349394/1‑55 (MQ=255) gTTTCACCCGCGAAAAAATAATTCTCAAGGAGAAGCGGATGAAACAGTATTTGAt > 1:3184704/1‑55 (MQ=255) tttCACCCGCGAAAAAATAattcagctaagacactgcactggattaagat > 1:1720902‑M2/1‑19 (MQ=255) tttCACCCGCGAAAAAATAATTCTCAAGGAGAAGCGGATGAAACAGTATTTGATTGc < 1:4394903/57‑1 (MQ=255) ttCACCCGCGAAAAAATAATTCTCAAGGAGAAGCGGATGAAACAGTATTTGATTGCCCCCTCAATTCTGTc > 1:709796/1‑71 (MQ=255) tCACCCGCGAAAAAATAattcagctaagacactgcactggattaagatgaaaacgattgaagttgatgat < 1:1221606‑M2/70‑54 (MQ=255) tCACCCGCGAAAAAATAattcagctaagacactgcactggattaagatgaaaacgat < 1:3618890‑M2/57‑41 (MQ=255) tCACCCGCGAAAAAATAattcagctaagacactgcactg < 1:3853578‑M2/39‑23 (MQ=255) tCACCCGCGAAAAAATAattcagctaagacactgcac < 1:3107360‑M2/37‑21 (MQ=255) cACCCGCGAAAAAATAATTCTCAAGGAGAAGCGGATGAAACAGTATTTGATTGCCCCCTCAATTCTGTCg > 1:1834283/1‑70 (MQ=255) ccGCGAAAAAATAattcagctaagacactgcactggattaagatgaaaacgattg > 1:4602323‑M2/1‑13 (MQ=255) ccGCGAAAAAATAATTCTCAAGGAGAAGCGGATGAAACAGTATTTGAt > 1:198113/1‑48 (MQ=255) ccGCGAAAAAATAATTCTCAAGGAGAAGCGGATGAAACAGTATTTGAt < 1:2464225/48‑1 (MQ=255) ccGCGAAAAAATAATTCTCAAGGAGAAGCGGATGAAACAGTATTTGATTGCCCCCTCAATTCTGTCGGCt > 1:2874335/1‑70 (MQ=255) ccGCGAAAAAATAATTCTCAAGGAGAAGCGGATGAAACAGTATTTGATTGCCCCCTCAATTCTGTCGGCTg < 1:5029858/71‑1 (MQ=255) cgcgAAAAAATAattcagctaagacactgcactggattaagatgaaaacgattgaagttgatgatgaactc > 1:438508‑M2/1‑12 (MQ=255) cgcgAAAAAATAATTCTCAAGGAGAAGCGGATGAAACAGTAttt < 1:2145083/44‑1 (MQ=255) cgcgAAAAAATAATTCTCAAGGAGAAGCGGATGAAACAGTAttt < 1:3398519/44‑1 (MQ=255) gcgAAAAAATAATTCTCAAGGAGAAGCGGATGAAACAGTATTTg < 1:4526276/44‑1 (MQ=255) gcgAAAAAATAATTCTCAAGGAGAAGCGGATGAAACAGTATTTGATTGCCCCCTCAATTCTGt > 1:776669/1‑63 (MQ=255) cgAAAAAATAattcagctaagacactgcactggattaagatgaaaacgattgaagttgatgatgaactcta > 1:1158809‑M2/1‑10 (MQ=255) cgAAAAAATAATTCTCAAGGAGAAGCGGATGAAACAGTAt > 1:1864197/1‑40 (MQ=255) cgAAAAAATAATTCTCAAGGAGAAGCGGATGAAACAGTATTTGATTGCCCCCTCAATTCTGTCGGCTGAtt < 1:971051/71‑1 (MQ=255) aaaaaaTAATTCTCAAGGAGAAGCGGATGAAACAGTATTTGATTGCCCCCTCAATTCTGTCGGCTGAtttt < 1:176063/71‑1 (MQ=255) aaaaaTAattcagctaagacactgcactggattaagatgaaaacgattgaagttgatgatgaactctacag < 1:1097308‑M2/71‑65 (MQ=255) aaaaaTAATTCTCAAGGAGAAGCGGATGAAACAGTATTTGATTGCCCCCTCa < 1:3356543/52‑1 (MQ=255) aaaaaTAATTCTCAAGGAGAAGCGGATGAAACAGTATTTGATTGCCCCCTCAAt < 1:2793505/54‑1 (MQ=255) aaaaTAattcagctaagacactgcactggattaagatgaaaacgattgaagttgatgatgaactctacagc < 1:2560616‑M2/71‑66 (MQ=255) aaaaTAATTCTCAAGGAGAAGCGGATGAAACAGTATTTGTTTGCCCCCTCAATTCTGTCg > 1:3831046/1‑60 (MQ=255) aaaaTAATTCTCAAGGAGAAGCGGATGAAACAGTATTTGATTGCCCCCTCAATTCTGTCGGCTGATTTTGc > 1:135190/1‑71 (MQ=255) aaaaTAATTCTCAAGGAGAAGCGGATGAAACAGTATTTGATTGCCCCCTCAATTCTGTCGGCTGATTTTGc > 1:5300064/1‑71 (MQ=255) aaaTAattcagctaagacactgcactggattaagatgaaaacgattgaagttgatgatgaactctacagc < 1:2192340‑M2/70‑66 (MQ=255) aaaTAATTCTCAAGGAGAAGCGGATGAAACAGTATTTGATTGCCCCCTCAATTCTGTCGGCTGAtttt > 1:224506/1‑68 (MQ=255) aataatTCTCAAGGAGAAGCGGATGAAACAGTATTTGATTGCCCCCTCAATTCTGTCGGCTGATTTTGccc > 1:4329537/1‑71 (MQ=255) ataatTCTCAAGGAGAAGCGGATGAAACAGTATTTGATTGCCCCCTCAATTCTGTc > 1:4524894/1‑56 (MQ=255) taattcagctaagacactgcactggattaagatgaaaacgattgaagttgat < 1:2475696‑M2/52‑51 (MQ=255) aatTCTCAAGGAGAAGCGGATGAAACAGTATTTGATTGCCCCCTCAATTCTGTCGGCTGATTTTGCCCGcc > 1:2865404/1‑71 (MQ=255) | GGCACACGTAAAAAGGTGGACGAACTGCTGGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAATTCTCAAGGAGAAGCGGATGAAACAGTATTTGATTGCCCCCTCAATTCTGTCGGCTGATTTTGCCCGCC > W3110S.gb/4125270‑4125410 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |