New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	W3110S.gb	2018571 =	7 (0.120)	40 (0.730)	28/96	NT	85.9%	coding (567/687 nt)	fliH	flagellar biosynthesis protein
	?	W3110S.gb	2519723 =	NA (NA)					intergenic (+33/‑54)	nupC/insL	nucleoside (except guanosine) transporter/predicted transposase

CTGTCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCT  >  W3110S.gb/2519658‑2519788                                                                  |                                                                  cTGTCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCTCATAAgc                                                              >  1:5257839/1‑71 (MQ=255)    tCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCt                                                           <  1:4730268/71‑1 (MQ=255)        cGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTa                                                          <  1:4383635/68‑1 (MQ=255)        cGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTa                                                          <  1:392272/68‑1 (MQ=255)         gTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACtt                                                      <  1:5297844/71‑1 (MQ=255)         gTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACt                                                       >  1:4080820/1‑70 (MQ=255)           cAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACtt                                                      >  1:741907/1‑69 (MQ=255)            aaTCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTaa                                                    <  1:4141597/70‑1 (MQ=255)            aaTCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTaa                                                    <  1:3435564/70‑1 (MQ=255)                  agcaCTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTaa                                                         >  1:2858551/1‑59 (MQ=255)                  agcaCTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTtg                                              <  1:4580542/70‑1 (MQ=255)                   gcaCTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTtgtg                                            >  1:5358667/1‑71 (MQ=255)                   gcaCTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTtgtg                                            <  1:4125639/71‑1 (MQ=255)                    caCTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTgg                                           >  1:3896251/1‑71 (MQ=255)                              ttAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTgg                                           <  1:2789858/60‑1 (MQ=255)                               tAAGACCATACATAAAAAAGCCGGGGATAATTCCCAt                                                                  >  1:2182855/1‑37 (MQ=255)                                aaGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGa                               >  1:3794795/1‑71 (MQ=255)                                    ccATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATg                           <  1:5065262/71‑1 (MQ=255)                                       tacataAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGAtt                        >  1:4169074/1‑71 (MQ=255)                                       tacataAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGAtt                        >  1:2458347/1‑71 (MQ=255)                                          ataAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTaa                     >  1:2116536/1‑71 (MQ=255)                                            aaaaaaGCCGGGGATAATTCCCATAAGCGCTAACTTaa                                                    >  1:3847526/1‑38 (MQ=255)                                            aaaaaaGCCGGGGATAATTCCCATAAGCGCTAACTTAAggg                                                 >  1:5048094/1‑41 (MQ=255)                                            aaaaaaGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACg                   >  1:4218832/1‑71 (MQ=255)                                             aaaaaGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTa                                         >  1:3254287/1‑48 (MQ=255)                                             aaaaaGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTaa                     >  1:4381703/1‑68 (MQ=255)                                               aaaGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGc                >  1:4215380/1‑71 (MQ=255)                                                      gggATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGaa         >  1:1436295/1‑71 (MQ=39)                                                        gATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCg              <  1:4959456/64‑1 (MQ=40)                                                        gATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAAt        >  1:2977981/1‑70 (MQ=40)                                                        gATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAAt        >  1:3518088/1‑70 (MQ=40)                                                         aTAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTa      >  1:2415771/1‑71 (MQ=38)                                                          tAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTAc     >  1:3440422/1‑71 (MQ=35)                                                           aaTTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTCCCGATGAATTAct    >  1:2059021/1‑71 (MQ=21)                                                            aTTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTActc   >  1:5098588/1‑71 (MQ=32)                                                             ttCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTActct  <  1:91548/71‑1 (MQ=31)                                                                  |                                                                  CTGTCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCT  >  W3110S.gb/2519658‑2519788

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.