| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | minE | 937260 = | 43 (0.700) | 13 (0.230) +GAT |
6/92 | NT | 18.9% | intergenic (+166/+241) | fdnI/yddM | formate dehydrogenase‑N, cytochrome B556 (gamma) subunit, nitrate‑inducible/predicted DNA‑binding transcriptional regulator |
| ? | minE | 1716817 = | 76 (1.240) | intergenic (+75/+123) | yphH/glyA | predicted DNA‑binding transcriptional regulator/serine hydroxymethyltransferase | |||||
Only 100 of 108 total aligned reads displayed.
GATAACGTAGAAAGGCTTCCCGAAGGAAGCCTTGATGATCATAAACGAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACACGGAGATTGCAATATATTGAATTTGCAAAGTTTTGTAGGCCGGATAAGGCGTT > minE/1716749‑1716885 | gATAACGTAGAAAGGCTTCCCGAAGGAAGCCTTGATGATCATAAACGAAAAATTGCCTGATGCGCTACGCt > 1:3444954/1‑71 (MQ=255) aCGTAGAAAGGCTTCCCGAAGGAAGCCTTGATGATCATAAACGAAAAATTGCCTGATGCGCTACGCTTa > 1:4594044/1‑69 (MQ=255) aCGTAGAAAGGCTTCCCGAAGGAAGCCTTGATGATCATAAACGAAAAATTGCCTGATGCGCTACGCTTAt > 1:393253/1‑70 (MQ=255) cGTAGAAAGGCTTCCCGAAGGAAGCCTTGATGATCATAAACGAAAAATTGCCTGATGCGCTACGCTTATCa < 1:496290/71‑1 (MQ=255) gcaGAAAGGCTTCCCGAAGGAAGCCTTGATGATCATAAACGAAAAATTGCCTGATGCGCTACGCTTATCAg < 1:3341619/69‑1 (MQ=255) gTAGAAAGGCTTCCCGAAGGAAGCCTTGATGATCATAAACGAAAAATTGCCTGATGCGCTACGCTTATCAg < 1:4924632/71‑1 (MQ=255) gAAAGGCTTCCCGAAGGAAGCCTTGATGATCATAAACGAAAAATTGCCTGATGCGCTACGCTTATCa > 1:3691080/1‑67 (MQ=255) aaaGGCTTCCCGAAGGAAGCCTTGATGATCATAAACGAAAAATTGCCTGATGCGCTACGCTTATCAg < 1:607077/67‑1 (MQ=255) gCTTCCCGAAGGAAGCCTTGATGATCATAAACGAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTacac > 1:79268/1‑71 (MQ=255) cccGAAGGAAGCCTTGATGATCATAAACGAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACACg > 1:725093/1‑68 (MQ=255) cccGAAGGAAGCCTTGATGATCATAAACGAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACACg > 1:5406542/1‑68 (MQ=255) cccGAAGGAAGCCTTGATGATCATAAACGAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACACGga < 1:1278834/70‑1 (MQ=255) gaaggaagCCTTGATGATCATAAACGAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTa > 1:4528062/1‑61 (MQ=255) gaaggaagCCTTGATGATCATAAACGAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTa > 1:2977713/1‑61 (MQ=255) gaaggaagCCTTGATGATCATAAACGAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACACGga > 1:4538483/1‑67 (MQ=255) gaagCCTTGATGATCATAAACGAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACACGGAGATTGc < 1:830322/69‑1 (MQ=255) gaagCCTTGATGATCATAAACGAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACACGGAGATTGCaa < 1:1382750/71‑1 (MQ=255) gaagCCTTGATGATCATAAACGAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACACGGAGATTGCaa < 1:4219521/71‑1 (MQ=255) agCCTTGATGATCATAAACGAAAAATTGCCTGATGCGCTACGCTTATCa > 1:1271807/1‑49 (MQ=255) agCCTTGATGATCATAAACGAAAAATTGCCTGATGCGCTACGCTTATCa > 1:537899/1‑49 (MQ=255) agCCTTGATGATCATAAACGAAAAATTGCCTGATGCGCTACGCTTATCa > 1:4391800/1‑49 (MQ=255) agCCTTGATGATCATAAACGAAAAATTGCCTGATGCGCTACGCTTATCa > 1:1540267/1‑49 (MQ=255) agCCTTGATGATCATAAACGAAAAATTGCCTGATGCGCTACGCTTATCa > 1:1048047/1‑49 (MQ=255) ttGATGATCATAAACGAAAAATTGCCTGATGCGCTACGCTTATCAGGCCt > 1:4727339/1‑50 (MQ=255) tgatgaTCATAAACGAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACACGGAGATTGCAATATAtt > 1:5167321/1‑70 (MQ=255) gatgacaaatgtaagcttgcctgatgcgcgatGCTTATCAgg > 1:2904041‑M2/33‑42 (MQ=255) atCATAAACGAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACACGGAGATTGc < 1:4501282/57‑1 (MQ=255) atCATAAACGAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACACGGAGATTGc < 1:1722259/57‑1 (MQ=255) tCATAAACGAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACACGGAGATTGCAATATATTGa > 1:5353944/1‑66 (MQ=255) tCATAAACGAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACACGGAGATTGCAATATATTGAATTTg > 1:2183963/1‑71 (MQ=255) cATAAACGAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACACGGAGATTGCAATATATTGAAttt > 1:2209273/1‑69 (MQ=255) cATAAACGAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACACGGAGATTGCAATATATTGAAttt > 1:1408933/1‑69 (MQ=255) cATAAACGAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACACGGAGATTGCAATATATTGAAttt > 1:4539410/1‑69 (MQ=255) cATAAACGAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACACGGAGATTGCAATATATTGAAttt > 1:2953982/1‑69 (MQ=255) cATAAACGAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACACGGAGATTGCAATATATTGAATTTg > 1:4178114/1‑70 (MQ=255) aTAAACGAAAAATTGCCTGATGCGCTACGCTTATCa > 1:167699/1‑36 (MQ=255) aTAAACGAAAAATTGCCTGATGCGCTACGCTTATCa > 1:3855170/1‑36 (MQ=255) aTAAACGAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACACGGAGATTGCAATATATTGAAttt > 1:294353/1‑68 (MQ=255) tAAACGAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACACGGAGATTGCAatatat < 1:1149807/60‑1 (MQ=255) aaaCGAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACACGgaga > 1:5673330/1‑48 (MQ=255) aaCGAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACACgg > 1:4679555/1‑44 (MQ=255) aaCGAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACACGGAGATTGCAATATATTg > 1:2996130/1‑60 (MQ=255) aaCGAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACACGGAGATTGCAATATATTg > 1:4525507/1‑60 (MQ=255) aaCGAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACACGGAGATTGCAATATATTGAATTTGCAAAg > 1:5357842/1‑71 (MQ=255) aaCGAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACACGGAGATTGCAATATATTGAATTTGCAAAg > 1:621064/1‑71 (MQ=255) caaaTTGCCTGATGCGCTACGCTTATCAGGCCTACAAGTGCATTGCAATCTATTGAATTTGCGATGTTTTg < 1:1355129/70‑1 (MQ=11) caaaTTGCCTGATGCGCTACGCTTATCAGGCCTACAAGTGCATTGCAATCTATTGAATTTGCGATGTTTTg < 1:1070969/70‑1 (MQ=11) caaaTTGCCTCATGCGCTACGCTTATCAGGCCTACAAGTGCATTGCAATCTATTGAATTTGCGATGTTTTg < 1:4129553/70‑1 (MQ=11) agcttgcctgatgcgcgatGCTTATCAGGCCTACCAGAAGATTGCAATATATTGAATTTg > 1:4318637‑M2/20‑60 (MQ=255) agcttgcctgatgcgcgatGCTTATCAGGCCTACCAGAAGATTGCAATATATTGAATTTGCACTGTTTTg < 1:345139‑M2/51‑1 (MQ=255) agcttgcctgatgcgcgatGCTTATCAGGCCTACCAGAAGATTGCAATATATTGAATTTGCACTGTTTTg < 1:334856‑M2/51‑1 (MQ=255) aaaTTGCCTGATGCGCTACGCTTATCAGGCCTACACGgaga > 1:3653164/1‑41 (MQ=40) aaaTTGCCTGATGCGCTACGCTTATCAGGCCTACACGgaga > 1:3717694/1‑41 (MQ=40) aaaTTGCCTGATGCGCTACGCTTATCAGGCCTACACGgaga > 1:378560/1‑41 (MQ=40) aaaTTGCCTGATGCGCTACGCTTATCAGGCCTACACGgaga > 1:4091429/1‑41 (MQ=40) aaaTTGCCTGATGCGCTACGCTTATCAGGCCTACACGgaga > 1:1042618/1‑41 (MQ=40) aaaTTGCCTGATGCGCTACGCTTATCAGGCCTACACGgaga > 1:1479918/1‑41 (MQ=40) aaaTTGCCTGATGCGCTACGCTTATCAGGCCTACAAGTGCATTGCAATCTATTGAATTTGCGATGTTTTg > 1:1029988/1‑70 (MQ=11) aaaTTGCCTGATGCGCTACGCTTATCAGGCCTACAAGTGCATTGCAATCTATTGAATTTGCGATGTTTTGt < 1:1405716/71‑1 (MQ=11) gcttgcctgatgcgcgatGCTTATCAGGCCTACCAGAAGATTGCAATATATTGAATTTGCACTGTTTTg > 1:100149‑M2/19‑69 (MQ=255) aaTTGCCTGATGCGCTACGCTTATCAGGCCTACACGGAGATTGCAATATATTGAATTTGCAAAGTTTTGt < 1:1965428/70‑1 (MQ=255) aaTTGCCTGATGCGCTACGCTTATCAGGCCTACAAGTGCATTGCAATCTATTGAATTTGCGATGTTTTGt < 1:1123517/70‑1 (MQ=11) aTTGCCTGATGCGCTACGCTTATCAGGCCTACACGGAGATTGCAATATATTGAATTTGCAAAGTTTTGTAg < 1:280107/71‑1 (MQ=255) ttgcctgatgcgcgatGCTTATCAGGCCTACCAGAAGATTGCAata < 1:829910‑M2/30‑1 (MQ=255) ttGCCTGATGCGCTACGCTTATCAGGCCTACAAGTGCATTGCAATCTATTGAATTTGCGATGTTTTGTAg > 1:4964856/1‑70 (MQ=11) gcctgatgcgcgatGCTTATCAGGCCTACCAGAAGATTGCAatata > 1:24882‑M2/15‑46 (MQ=255) ccTGATGCGCTACGCTTATCAGGCCTACAAGTGCATTGCAATCTATTGAATTTGCGATGTTTTGTAggac < 1:3626879/70‑3 (MQ=11) ccTGATGCGCTACGCTTATCAGGCCTACAAGTGCATTGCAATCTATTGAATTTGCGATGTTTTGTAgga < 1:5333843/69‑2 (MQ=11) tGATGCGCTACGCTTATCAGGCCTACACGGAGATTGCAATATATTGAATTTGCAAAGTTTTGTAGGCCGGa > 1:87508/1‑71 (MQ=255) gATGCGCTACGCTTATCAGGCCTACACGGAGATTGCAATATATTGAAt < 1:3524256/48‑1 (MQ=255) atgcgcgatGCTTATCAGGCCTACCAGAAGATTGCa > 1:4517591‑M2/10‑36 (MQ=255) atgcgcgatGCTTATCAGGCCTACCAGAAGATTGCAATATATTGAATTTGCACTGTTTTGTAGGCCGGATa < 1:276209‑M2/62‑1 (MQ=255) aTGCGCTACGCTTATCAGGCCTACACGGAGATTGCAATATATTGAATTTGCAAAGTTTTGt > 1:3465622/1‑61 (MQ=255) aTGCGCTACGCTTATCAGGCCTACACGGAGATTGCAATATATTGAATTTGCAAAGTTTTGt > 1:5241154/1‑61 (MQ=255) aTGCGCTACGCTTATCAGGCCTACACGGAGATTGCAATATATTGAATTTGCAAAGTTTTGt > 1:3472443/1‑61 (MQ=255) aTGCGCTACGCTTATCAGGCCTACACGGAGATTGCAATATATTGAATTTGCAAAGTTTTGTAGGCCGGa < 1:64705/69‑1 (MQ=255) aTGCGCTACGCTTATCAGGCCTACACGGAGATTGCAATATATTGAATTTGCAAAGTTTTGTAGGCCGGAt < 1:1271959/70‑1 (MQ=255) aTGCGCTACGCTTATCAGGCCTACACGGAGATTGCAATATATTGAATTTGCAAAGTTTTGTAGGCCGGAt < 1:5506823/70‑1 (MQ=255) aTGCGCTACGCTTATCAGGCCTACAAGTGCATTGCAATCTATTGAATTTGCGATGTTTTGTAGGACGGAt < 1:1233144/70‑1 (MQ=11) aTGCGCTACGCTTATCAGGCCTACAAGTGCATTGCAATCTATTGAATTTGCGATGTTTTGTAGGACGGAt < 1:4987178/70‑1 (MQ=11) aTGCGCTACGCTTATCAGGCCTACAAGTGCATTGCAATCTATTGAATTTGCGATGTTTTGTAGGACGGATa < 1:2054670/71‑1 (MQ=11) tgcgcgatGCTTATCAGGCCTACCAGAAGATTGCAATATATTGAATTTGCACTGTTTTg < 1:5484282‑M2/51‑1 (MQ=255) tgcgcgatGCTTATCAGGCCTACCAGAAGATTGCAATATATTGAATTTGCACTGTTTTg < 1:303370‑M2/51‑1 (MQ=255) cgcgatGCTTATCAGGCCTACCAGAAGATTGCAata > 1:4175209‑M2/7‑36 (MQ=255) cgcTACGCTTATCAGGCCTACACGGAGATTGCAATATATTGAATTTGCAAAGTTTTGTAGGCCGGATAAgg > 1:1208984/1‑71 (MQ=255) cgcTACGCTTATCAGGCCTACAAGTGCATTGCAATCTATTGAATTTGCGATGTTTTGTAGGACGGATAAg < 1:3703517/70‑1 (MQ=11) cgcTACGCTTATCAGGCCTACAAGTGCATTGCAATCTATTGAATTTGCGATGTTTTGTAGGACGGATAAg < 1:4010410/70‑1 (MQ=11) cgatGCTTATCAGGCCTACA‑GAAGATTGCAATATATTGAATTTGCACTGTTTTGTAGGCCGGATAAGGCGt < 1:2714889‑M2/67‑1 (MQ=255) atGCTTATCAGGCCTACCAGAAGATTGCAATATATTGAATTTGCACTGtttt < 1:5031911‑M2/50‑1 (MQ=255) atGCTTATCAGGCCTACCAGAAGATAGCAATATATTGAATTTGCACTGTTTTGTAGGCCGGATAAGGCGtt < 1:4203362‑M2/69‑1 (MQ=255) aCGCTTATCAGGCCTACACGGAGATTGCAATATATTGAATTTGCAAAGTTTTGTAGGCCGGa > 1:4984271/1‑62 (MQ=255) aCGCTTATCAGGCCTACAAGTGCATTGCAATCTATTGAATTTGCGATGTTTTGTAgga > 1:5119812/1‑57 (MQ=2) aCGCTTATCAGGCCTACAAGTGCATTGCAATCTATTGAATTTGCGATGTTTTGTAgga > 1:5616760/1‑57 (MQ=2) aCGCTTATCAGGCCTACAAGTGCATTGCAATCTATTGAATTTGCGATGTTTTGTAgga > 1:4816340/1‑57 (MQ=2) aCGCTTATCAGGCCTACAAGTGCATTGCAATCTATTGAATTTGCGATGTTTTGTAgga > 1:293058/1‑57 (MQ=2) aCGCTTATCAGGCCTACAAGTGCATTGCAATCTATTGAATTTGCGATGTTTTGTAGGACGGATAAGGCgct > 1:1436366/1‑69 (MQ=2) aCGCTTATCAGGCCTACAAGTGCATTGCAATCTATTGAATTTGCGATGTTTTGTAGGACGGATAAGGCgct > 1:4413369/1‑69 (MQ=2) cGCTTATCAGGCCTACACGGAGATTGCAATATATTGAATTTGCaaa > 1:2113532/1‑46 (MQ=255) cGCTTATCAGGCCTACACGGAGATTGCAATATATTGAATTTGCaaa > 1:1220582/1‑46 (MQ=255) cGCTTATCAGGCCTACACGGAGATTGCAATATATTGAATTTGCAAAGTTTTGTAGGCCGGATAAGGCGtt < 1:5436240/70‑1 (MQ=255) | GATAACGTAGAAAGGCTTCCCGAAGGAAGCCTTGATGATCATAAACGAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACACGGAGATTGCAATATATTGAATTTGCAAAGTTTTGTAGGCCGGATAAGGCGTT > minE/1716749‑1716885 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |