| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | minE | 1165287 = | 99 (1.610) | 8 (0.150) | 4/84 | NT | 10.4% | coding (340/1491 nt) | ynjC | fused transporter subunits and membrane component of ABC superfamily |
| ? | minE | 1165306 = | 53 (1.010) | coding (359/1491 nt) | ynjC | fused transporter subunits and membrane component of ABC superfamily | |||||
Only 100 of 120 total aligned reads displayed.
CTGACGGAGGGCTGCTTTATGACTATTTCCCGTATTTCACTCCGCCAATGGACCGATTTGGCATCGGTCTGGGCCTCACCCTTGCAGTGAAAGAAAGCGCATTTCTGCTGTGGATCTTAGCAGCAGTATTGAGCGAAAAA > minE/1165237‑1165376 | cTGACGGAGGGCTGCTTTATGACTATTTCCCGTATTTCACTCCGCCAATGGACCGATTTGGCATCGGTCt < 1:4825572/70‑1 (MQ=255)cTGACGGAGGGCTGCTTTATGACTATTTCCCGTATTTCACTCCGCCAATGGACCGATTTGGCATCGGTCt < 1:4371635/70‑1 (MQ=255) aagatccacagcagaaatgcgctttctttcactgcaagggtgaggcccaGACCGATTTGGCATCGGTCTg < 1:2474633‑M1/21‑1 (MQ=255) cGGAGGGCTGCTTTATGACTATTTCCCGTATTTCACTCCGCCAATGGACCGATTTGGCATCGGTCTGGGcc < 1:2395807/71‑1 (MQ=255) gAGGGCTGCTTTATGACTATTTCCCGTATTTCACTCCGCCAATGGACCGATTTGGCATCGGTCTggg > 1:765195/1‑67 (MQ=255) gAGGGCTGCTTTATGACTATTTCCCGTATTTCACTCCGCCAATGGACCGATTTGGCATCGGTCTggg > 1:1716919/1‑67 (MQ=255) aGGGCTGCTTTATGACTATTTCCCGTATTTCACTCCGCCAATGGACCGATTTGGCATCGGTCTGGGCCTCa > 1:2539190/1‑71 (MQ=255) ggCTGCTTTATGACTATTTCCCGTATTTCACTCCGCCAATGGACCGATTTGGCATCGGTCTGGGCCTCAcc < 1:1994626/71‑1 (MQ=255) ctgctTTATGACTATTTCCCGTATTTCACTCCGCCAATGGACCGATTTGGCATCGGTCTGGGCCTCACCCt < 1:5254108/71‑1 (MQ=255) ctgctTTATGACTATTTCCCGTATTTCACTCCGCCAATGGACCGATTTGGCATCGGTCTGGGCCTCACCCt > 1:826431/1‑71 (MQ=255) tgctTTATGACTATTTCCCGTATTTCACTCCGCCAATGGACCGATTTGGCATCGGTCTGGGCCTCACCCtt > 1:417561/1‑71 (MQ=255) tttATGACTATTTCCCGTATTTCACTCCGCCAATGGACCGATTTGGCATCGGTCTGGGCCTCACCCTTg > 1:2008095/1‑69 (MQ=255) tttATGACTATTTCCCGTATTTCACTCCGCCAATGGACCGATTTGGCATCGGTCTGGGCCTCACCCTTg > 1:1436284/1‑69 (MQ=255) ttATGACTATTTCCCGTATTTCACTCCGCCAATGGACCGATTTGGCATCGGTCTGGGCCTCa > 1:2636532/1‑62 (MQ=255) tGACTATTTCCCGTATTTCACTCCGCCAATGGACCGATTTGGCATCGGTCTGGGCCTCACCCTTGCAGTga < 1:5326341/71‑1 (MQ=255) gACTATTTCCCGTATTTCACTCCGCCAATGGACCGATTTGGCATCGGTCTGGGCCTCACCCTTGCAGTga > 1:4261979/1‑70 (MQ=255) gACTATTTCCCGTATTTCACTCCGCCAATGGACCGATTTGGCATCGGTCTGGGCCTCACCCTTGCAGTga < 1:2965722/70‑1 (MQ=255) cTATTTCCCGTATTTCACTCCGCCAATGGACCGATTTGGCATCGGTCt > 1:166448/1‑48 (MQ=255) cTATTTCCCGTATTTCACTCCGCCAATGGACCGATTTGGCATCGGTCTGGTCCTCACCCTTGCAGTgaaag < 1:2070020/71‑1 (MQ=255) cTATTTCCCGTATTTCACTCCGCCAATGGACCGATTTGGCATCGGTCTGGGCCTCACCCTTGCAGTgaaag < 1:5127603/71‑1 (MQ=255) tttCCCGTATTTCACTCCGCCAATGGACCGATTTGGCATCGGTCTGGGCCTCACCCtt < 1:1591734/58‑1 (MQ=255) tttCCCGTATTTCACTCCGCCAATGGACCGATTTGGCATCGGTCTGGGCCTCACCCTTGCAGTgaaagaaa < 1:3482239/71‑1 (MQ=255) tttCCCGTATTTCACTCCGCCAATGGACCGATTTGGCAGCGGTCTGGGCCTCACCCTTGCAGTgaaagaa < 1:543478/70‑1 (MQ=255) ttCCCGTATTTCACTCCGCCAATGGACCGATTTGGCATCGGTCt > 1:2273637/1‑44 (MQ=255) ttCCCGTATTTCACTCCGCCAATGGACCGATTTGGCATCGGTCTg > 1:2040070/1‑45 (MQ=255) ttCCCGTATTTCACTCCGCCAATGGACCGATTTGGCATCGGTCTg > 1:432368/1‑45 (MQ=255) ttCCCGTATTTCACTCCGCCAATGGACCGATTTGGCATCGGTCTg > 1:4493334/1‑45 (MQ=255) ttCCCGTATTTCACTCCGCCAATGGACCGATTTGGCATCGGTCTg > 1:2625524/1‑45 (MQ=255) ccGTATTTCACTCCGCCAATGGACCGATTTGGCATCGGTCTGGGCCTCACCCTTGCAGTGAAAGAAAgcg < 1:3936771/70‑1 (MQ=255) ccGTATTTCACTCCGCCAATGGACCGATTTGGCATCGGTCTGGGCCTCACCCTTGCAGTGAAAGAAAgcg < 1:1676776/70‑1 (MQ=255) gTATTTCACTCCGCCAATGGACCGATTTGGCATCGGTCTGGGCCTCa > 1:81692/1‑47 (MQ=255) tATTTCACTCCGCCAATGGACCGATTTGGCATCGGTCTGGGCCTCACCCt > 1:2881782/1‑50 (MQ=255) tttCACTCCGCCAATGGACCGATTTGGCATCGGTCTg > 1:4692659/1‑37 (MQ=255) tttCACTCCGCCAATGGACCGATTTGGCATCGGTCTg > 1:2979175/1‑37 (MQ=255) tttCACTCCGCCAATGGACCGATTTGGCATCGGTCTGGGCCTCACCCTTGCAGTGAAAGAAAGCGCATTTc > 1:2593692/1‑71 (MQ=255) tttCACTCCGCCAATGGACCGATTTGGCATCGGTCTGGGCCTCACCCTTGCAGTGAAAGAAAGCGCATTTc > 1:5672446/1‑71 (MQ=255) tttCACTCCGCCAATGGACCGATTTGGCATCGGTCTGGGCCTCACCCTTGCAGTGAAAGAAAGCGCATTTc > 1:858969/1‑71 (MQ=255) ttCACTCCGCCAATGGACCGATTTGGCATCGGTCTGGGCCTCACCCTTGCAGTGAAAGAAAGCGCAtt < 1:3588847/68‑1 (MQ=255) tCACTCCGCCAATGGACCGATTTGGCATCGGTCTGGGCCTCACCCTTGCAGTGAAAGAAAGCGCAttt > 1:3647276/1‑68 (MQ=255) cACTCCGCCAATGGACCGATTTGGCATCGGTCTGGGc < 1:3147801/37‑1 (MQ=255) cGCCAATGGACCGATTTGGCATCGGTCTGGGCCTCACCCTTGCAGTGAAAGAAAGCGCATTTCTGCTGTgg < 1:745203/71‑1 (MQ=255) cGCCAATGGACCGATTTGGAATCGGTCTGGGCCTCACCCTTGCAGTGAAAGAAAGCGCATTTCTGCtgtg < 1:5643769/70‑1 (MQ=255) cGCCAATGGACCGATTTGGAATCGGTCTGGGCCTCACCCTTGCAGTGAAAGAAAGCGCATTTCTGCtgtg < 1:5637389/70‑1 (MQ=255) gCCAATGGACCGATTTGGCATCGGTCTGGGCCTCACCCTTGCAGTGAAAGAAAGCGCATTTCTGCTGTGGa < 1:5374930/71‑1 (MQ=255) gCCAATGGACCGATTTGGCATCGGTCTGGGCCTCACCCTTGCAGTGAAAGAAAGCGCATTTCTGCTGTGGa < 1:3451083/71‑1 (MQ=255) ccAATGGACCGATTTGGCATCGGTCTGGGCCTCACCCTTGCAGTGAAAGAAAGCGCATTTCTGCTGTGGAt > 1:330654/1‑71 (MQ=255) aaTGGACCGATTTGGCATCGGTCTGGGCCTCACCCTTGCAGTGAAAGAAAGCGCATTTCTGCTGTGGATCt > 1:2505024/1‑71 (MQ=255) aaTGGACCGATTTGGCATCGGTCTGGGCCTCACCCTTGCAGTGAAAGAAAGCGCATTTCTGCTGTGGATCt < 1:5653266/71‑1 (MQ=255) aTGGACCGATTTGGCATCGGTCTGGGCCTCACCCTTGCAGTGAAAGAAAGCGCATTTCTGCTGTGGATCtt < 1:1390692/71‑1 (MQ=255) aTGGACCGATTTGGCATCGGTCTGGGCCTCACCCTTGCAGTGAAAGAAAGCGCATTTCTGCTGTGGATCt > 1:744004/1‑70 (MQ=255) tGGACCGATTTGGCATCGGTCTGGGCCTCACCCTTGCAGTGAAAGAAAGCGCATTTCTGCTGTGGATCt > 1:3264146/1‑69 (MQ=255) tGGACCGATTTGGCATCGGTCTGGGCCTCACCCTTGCAGTGAAAGAAAGCGCATTTCTGCTGTGGATCt > 1:3786534/1‑69 (MQ=255) tGGACCGATTTGGCATCGGTCTGGGCCTCACCCTTGCAGTGAAAGAAAGCGCATTTCTGCTGTGGATCt > 1:5374784/1‑69 (MQ=255) cagaccgatgccaaatcggtcTGGGCCTCACCCTTGCAGTGAAAGAAAGCGCATTTCTGCTGTGGATCtt < 1:2474633‑M2/49‑1 (MQ=255) ggACCGATTTGGCATCGGTCTGGGCCTCACCCTTGCAGTGAAAGAAAGCGCATTTCTGCTGTGGATCtt < 1:2048555/69‑1 (MQ=255) ggACCGATTTGGCATCGGTCTGGGCCTCACCCTTGCAGTGAAAGAAAGCGCATTTCTGCTGTGGATCtt < 1:5243122/69‑1 (MQ=255) ggACCGATTTGGCATCGGTCTGGGCCTCACCCTTGCAGTGAAAGAAAGCGCATTTCTGCTGTGGATCTTag > 1:439355/1‑71 (MQ=255) ggACCGATTTGGCATCGGTCTGGGCCTCACCCTTGCAGTGAAAGAAAGCGCATTTCTGCTGTGGATCTTag > 1:2384797/1‑71 (MQ=255) GACCGATTTGGCATCGGTCTGGGCCTCACCCTTGCAGTgaaa < 1:2782588‑M1/42‑1 (MQ=255) GACCGATTTGGCATCGGTCTGGGCCTCACCCTTGCAGTGAAAGAAAGCGCATTTCTGCtgt < 1:663389‑M1/61‑1 (MQ=255) GACCGATTTGGCATCGGTCTGGGCCTCACCCTTGCAGTGAAAGAAAGCGCATTTCTGCTGTGGATCTTag < 1:3141259‑M1/70‑1 (MQ=255) accgatgccaaatcggtcTGGGCCTCACCCTTGCAGTGAAAGAAAGCGCATTTCTGCTGTGGATCt < 1:1303798‑M2/48‑1 (MQ=255) ccgatgccaaatcggtcTGGGCCTCACCCTTGCAGTga < 1:704653‑M2/21‑1 (MQ=255) ccgatgccaaatcggtcTGGGCCTCACCCTTGCAGTga < 1:1291798‑M2/21‑1 (MQ=255) ccgatgccaaatcggtcTGGGCCTCACCCTTGCAGTga < 1:255476‑M2/21‑1 (MQ=255) ccgatgccaaatcggtcTGGGCCTCACCCTTGCAGTga < 1:921847‑M2/21‑1 (MQ=255) CCGATTTGGCATCGGTCTGGGCCTCACCCTTGCAGTGAAAGAAAGCGCATTTCTGCTGTGGATCTTagcag > 1:5328688‑M1/1‑71 (MQ=255) CCGATTTGGCATCGGTCTGGGCCTCACCCTTGCAGTGAAAGAAAGCGCATTTCTGCTGTGGATCTTagcag > 1:3796669‑M1/1‑71 (MQ=255) CCGATTTGGCATCGGTCTGGGCCTCACCCTTGCAGTGAAAGAAAGCGCATTTCTGCTGTGGATCTTagcag > 1:3507602‑M1/1‑71 (MQ=255) CCGATTTGGCATCGGTCTGGGCCTCACCCTTGCAGTGAAAGAAAGCGCATTTCTGCTGTGGATCTTag < 1:3642185‑M1/68‑1 (MQ=255) gatgccaaatcggtcTGGGCCTCACCCTTGCAGTgaaa > 1:2236823‑M2/16‑38 (MQ=255) GATTTGGCATCGGTCTGGGCCTCACCCTTGCAGTgaaa > 1:1067000‑M1/1‑38 (MQ=255) GATTTGGCATCGGTCTGGGCCTCACCCTTGCAGTGAAAGAAAGCGCATTTCTGCTGTGGAt > 1:4044161‑M1/1‑61 (MQ=255) ATTTGGCATCGGTCTGGGCCTCACCCTTGCAGTGAAAGAAAGCGCATTTctg > 1:2980599‑M1/1‑52 (MQ=255) ATTTGGCATCGGTCTGGGCCTCACCCTTGCAGTGAAAGAAAGCGCATTTctg > 1:1567622‑M1/1‑52 (MQ=255) ATTTGGCATCGGTCTGGGCCTCACCCTTGCAGTGAAAGAAAGCGCATTTctg > 1:5296852‑M1/1‑52 (MQ=255) ATTTGGCATCGGTCTGGGCCTCACCCTTGCAGTGAAAGAAAGCGCATTTctg > 1:3978805‑M1/1‑52 (MQ=255) ATTTGGCATCGGTCTGGGCCTCACCCTTGCAGTGAAAGAAAGCGCATTTctg > 1:1727468‑M1/1‑52 (MQ=255) TTTGGCATCGGTCTGGGCCTCACCCTTGCAGTGAAAGAAAGCGCATTTctg > 1:4353742‑M1/1‑51 (MQ=255) TTTGGCATCGGTCTGGGCCTCACCCTTGCAGTGAAAGAAAGCGCATTTCTGCTGTgg > 1:5643111‑M1/1‑57 (MQ=255) TTTGGCATCGGTCTGGGCCTCACCCTTGCAGTGAAAGAAAGCGCATTTCTGCTGTGGATCTTAGcagcag < 1:3091135‑M1/70‑1 (MQ=255) TTTGGCATCGGTCTGGGCCTCACCCTTGCAGTGAAAGAAAGCGCATTTCTGCTGTGGATCTTAGcagcag < 1:3883188‑M1/70‑1 (MQ=255) tGGCATCGGTCTGGGCCTCACCCTTGCAGTGAAAGAAAGCGCATTTCTGCtgtg > 1:2670295/1‑54 (MQ=255) tGGCATCGGTCTGGGCCTCACCCTTGCAGTGAAAGAAAGCGCATTTCTGCtgtg > 1:1196175/1‑54 (MQ=255) ggCATCGGTCTGGGCCTCACCCTTGCAGTGAAAGAAAGCGCATTTCTGCTGTGGATCTTAGCAGCAGTAt < 1:1648290/70‑1 (MQ=255) ggCATCGGTCTGGGCCTCACCCTTGCAGTGAAAGAAAGCGCATTTCTGCTGTGGATCTTAGCAGCAGTAt < 1:2960385/70‑1 (MQ=255) gCATCGGTCTGGGCCTCACCCTTGCAGTGAAAGAAAGCGCATTTCTGCTGTGGATCTTAGCAGCAGTAtt < 1:1928262/70‑1 (MQ=255) gCATCGGTCTGGGCCTCACCCTTGCAGTGAAAGAAAGCGCATTTCTGCTGTGGATCTTAGCAGCAGTAtt < 1:4824977/70‑1 (MQ=255) tcggtcTGGGCCTCACCCTTGCAGTGAAAGAAAGCGCATTTCTGCTGTGGAt < 1:5194348‑M2/46‑1 (MQ=255) tcggtcTGGGCCTCACCCTTGCAGTGAAAGAAAGCGCATTTCTGCTGTGGAt < 1:4956084‑M2/46‑1 (MQ=255) tcggtcTGGGCCTCACCCTTGCAGTGAAAGAAAGCGCATTTCTGCTGTGGAt < 1:4726405‑M2/46‑1 (MQ=255) cggtcTGGGCCTCACCCTTGCAGTGAAAGAAAGCGCATTTctgct < 1:780624‑M2/40‑1 (MQ=255) cggtcTGGGCCTCACCCTTGCAGTGAAAGAAAGCGCATTTctgct < 1:3568056‑M2/40‑1 (MQ=255) cggtcTGGGCCTCACCCTTGCAGTGAAAGAAAGCGCATTTctgct < 1:372752‑M2/40‑1 (MQ=255) cggtcTGGGCCTCACCCTTGCAGTGAAAGAAAGCGCATTTCTGCtgtg > 1:5164055‑M2/6‑48 (MQ=255) cggtcTGGGCCTCACCCTTGCAGTGAAAGAAAGCGCATTTCTGCTGTGGACCTTAGCAGCAGTa < 1:399458‑M2/59‑1 (MQ=255) ggtcTGGGCCTCACCCTTGCAGTGAAAGAAAGCGCATTTCTGCTGTGGATCTTAGCAGCAGTATTGAGCg > 1:1167949‑M2/5‑70 (MQ=255) tcTGGGCCTCACCCTTGCAGTGAAAGAAAGCGCATTTCTGCTGTGGATCTTAGCAGCAGTATTg < 1:3930659‑M2/62‑1 (MQ=255) tcTGGGCCTCACCCTTGCAGTGAAAGAAAGCGCATTTCTGCTGTGGATCTTAGCAGCAGTATTGAGCGaaa < 1:2401029‑M2/69‑1 (MQ=255) tcTGGGCCTCACCCTTGCAGTGAAAGAAAGCGCATTTCTGCTGTGGATCTTAGCAGCAGTATTGAGCGaaa < 1:4779542‑M2/69‑1 (MQ=255) | CTGACGGAGGGCTGCTTTATGACTATTTCCCGTATTTCACTCCGCCAATGGACCGATTTGGCATCGGTCTGGGCCTCACCCTTGCAGTGAAAGAAAGCGCATTTCTGCTGTGGATCTTAGCAGCAGTATTGAGCGAAAAA > minE/1165237‑1165376 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |