New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | minE | 202689 = | 0 (0.000) | 8 (0.140) +GGAGCAAGCTC |
3/78 | NT | 100% | noncoding (94/1542 nt) | rrsH | 16S ribosomal RNA |
? | minE | = 2763338 | 0 (0.000) | noncoding (76/1542 nt) | rrsE | 16S ribosomal RNA |
CTAACACATGCAAGTCGAACGGTAACAGGAAGAAGCTTGCTTCTTTGCTGACGAGTGGCGGACGGGTGAGTA > minE/202643‑202714 | gcatgctttacacatgcaagtcgaacggtaacagggagcttgctccGCTGACGAGTGGCGAACGGGTGAGt > 1:3655334‑M1/47‑71 (MQ=255) gcatgctttacacatgcaagtcgaacggtaacagggagcttgctccGCTGACGAGTGGCGAACGGGTGAGt > 1:3774788‑M1/47‑71 (MQ=255) acatgcaagtcgaacggtaacagggagcttgctccGCTGACGAGTGGCGAACGGGTGAGTa < 1:1081818‑M1/26‑1 (MQ=255) acatgcaagtcgaacggtaacagggagcttgctccGCTGACGAGTGGCGAACGGGTGAGTa < 1:1832090‑M1/26‑1 (MQ=255) acatgcaagtcgaacggtaacagggagcttgctccGCTGACGAGTGGCGAACGGGTGAGTa < 1:4130444‑M1/26‑1 (MQ=255) acatgcaagtcgaacggtaacagggagcttgctccGCTGACGAGTGGCGAACGGGTGAGTa < 1:4582169‑M1/26‑1 (MQ=255) atgcaagtcgaacggtaacagggagcttgctccGCTGACGAGTGGCGAACg < 1:3652905‑M1/18‑1 (MQ=255) ttaacagggagcttgctccGCTGACGAGTGGCGAACGGGTGAGt > 1:2457825‑M1/20‑44 (MQ=255) | CTAACACATGCAAGTCGAACGGTAACAGGAAGAAGCTTGCTTCTTTGCTGACGAGTGGCGGACGGGTGAGTA > minE/202643‑202714 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |