BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	minE	= 432867	85 (1.150)	7 (0.100)	3/92	NT	7.3%	coding (1233/1407 nt)	ybfM	predicted outer membrane porin
*	?	minE	= 432885	99 (1.460)	7 (0.100)	3/92	NT	7.3%	coding (1251/1407 nt)	ybfM	predicted outer membrane porin

Only 100 of 126 total aligned reads displayed.

CGGATGCGTACTACGACAAAAACCGGACTATTGAAGAGTCTGCCTACAGCCTGGATGCGGTCTATACCATTCAGGACGGTCGCGCCAAAGGCACGATGTTCAAACTGCATTTCACCGAATACGACAACCACTCCGA  >  minE/432815‑432950

cGGATGCGTACTACGACAAAAACCGGACTATTGAAGAGTCTGCCTACAGCCTGGATGCGGTCTATACCAtt                                                                   >  1:2735686/1‑71 (MQ=255)

  gATGCGTACTACGACAAAAACCGGACTATTGAAGAGTCTGCCTACAGCCTGGATGCGGTCTATACCAtt                                                                   >  1:4626379/1‑69 (MQ=255)

      cGTACTACGACAAAAACCGGACTATTGAAGAGTCTGCCTACAGCCTGGATGCGGTCTATACCATTCAGGAc                                                             <  1:3885017/71‑1 (MQ=255)

       gTACTACGACAAAAACCGGACTATTGAAGAGTCTGCCTACAGCCTGGATGCGGTCTATACCATTcagg                                                               <  1:644489‑M2/68‑5 (MQ=255)

       gTACTACGACAAAAACCGGACTATTGAAGAGTCTGCCTACAGCCTGGATGCGGTCTATACCATTCAGGa                                                              >  1:3829951/1‑69 (MQ=255)

        tactacGACAAAAACCGGACTATTGAAGAGTCTGCCTACAGCCTGGATGCGGTCTATACCATTCAGGACgg                                                           <  1:2672724/71‑1 (MQ=255)

         actacGACAAAAACCGGACTATTGAAGAGTCTGCCTACAGCCTGGATGCGGTCTATACCATTCAGGACGGt                                                          >  1:4746197/1‑71 (MQ=255)

         actacGACAAAAACCGGACTATTGAAGAGTCTGCCTACAGCCTGGATGCGGTCTATACCATTCAGGACGGt                                                          >  1:4478441/1‑71 (MQ=255)

            acGACAAAAACCGGACTATTGAAGAGTCTGCCTACAGCCTGGATGCGGTCTATACCATTCAGGACGGTcgc                                                       >  1:3510689/1‑71 (MQ=255)

             cGACAAAAACCGGACTATTGAAGAGTCTGCCTACAGCCTGGATGCGGTCTATACCATTca                                                                 <  1:3440178‑M2/60‑3 (MQ=255)

             cGACAAAAACCGGACTATTGAAGAGTCTGCCTACAGCCTGGATGCGGTCTATACCATTca                                                                 <  1:2166677‑M2/60‑3 (MQ=255)

                cAAAAACCGGACTATTGAAGAGTCTGCCTACAGCCTGGATGCGGTCTATACCATTCAGGACgg                                                           >  1:1279973/1‑63 (MQ=255)

                cAAAAACCGGACTATTGAAGAGTCTGCCTACAGCCTGGATGCGGTCTATACCATTCAGGACGGTCGCGcc                                                    >  1:4233124/1‑70 (MQ=255)

                 ataaaCCGGACTATTGAAGAGTCTGCCTACAGCCTGGATGCGGTCTATACCATTCAGGACGGTCGCGCCaa                                                  <  1:4554800/69‑1 (MQ=255)

                 aaaaaCCGGACTATTGAAGAGTCTGCCTACAGCCTGGATGCGGTCTATACCATTCAGGACGGTCGCGCCaa                                                  <  1:1999558/71‑1 (MQ=255)

                 aaaaaCCGGACTATTGAAGAGTCTGCCTACAGCCTGGATGCGGTCTATACCATTCAGGACGGTCGCGCCa                                                   >  1:967998/1‑70 (MQ=255)

                  aaaaCCGGACTATTGAAGAGTCTGCCTACAGCCTGGATGCGGTCTATACCATTCAGGACGGTCGCGCCaa                                                  <  1:907241/70‑1 (MQ=255)

                   aaaCCGGACTATTGAAGAGTCTGCCTACAGCCTGGATGCGGTCTATACCATTCAGGACGGTCGCGCCAAAg                                                >  1:2993143/1‑71 (MQ=255)

                   aaaCCGGACTATTGAAGAGTCTGCCTACAGCCTGGATGCGGTCTATACCATTCAGGACGGTCGCGCCAAAg                                                >  1:2119947/1‑71 (MQ=255)

                    aaCCGGACTATTGAAGAGTCTGCCTACAGCCTGGATGCGGTCTATACCATTCAGGACGGGCGCGCCAAAgg                                               <  1:4076049/71‑1 (MQ=255)

                       cGGACTATTGAAGAGTCTGCCTACAGCCTGGATGCGGTCTATACCATTCAGGACGGTCGCGCCAAAGGCAc                                            <  1:4126149/71‑1 (MQ=255)

                       cGGACTATTGAAGAGTCTGCCTACAGCCTGGATGCGGTCTATACCATTCAGGACGGTCGCGCCAAAGGCAc                                            <  1:544372/71‑1 (MQ=255)

                         gACTATTGAAGAGTCTGCCTACAGCCTGGATGCGGTCTATACCATTCAGGACGGTCGCGCCAAAGGCACGa                                          <  1:442012/71‑1 (MQ=255)

                          aCTATTGAAGAGTCTGCCTACAGCCTGGATGCGGTCTATACCATTCAGGACGGTCGCGCCAAAGGCACGAt                                         <  1:3189765/71‑1 (MQ=255)

                              ttGAAGAGTCTGCCTACAGCCTGGATGCGGTCTATACCATTCAGGACGGTCGCGCCaa                                                  <  1:169270/58‑1 (MQ=255)

                               tGAAGAGTCTGCCTACAGCCTGGATGCGGTCTATACCATTCAGGACGGTCGCGCCaaa                                                 >  1:3348657/1‑58 (MQ=255)

                               tGAAGAGTCTGCCTACAGCCTGGATGCGGTCTATACCATTCAGGACGGTCGCGCCaaa                                                 >  1:1557734/1‑58 (MQ=255)

                                gAAGAGTCTGCCTACAGCCTTGATGCGGTCTATACCATTCAGGACGGTCGCGCCAAAGGCACGATGTTCa                                    >  1:1805748/1‑70 (MQ=255)

                                gAAGAGTCTGCCTACAGCCTGGATGCGGTCTATACCATTCAGGACGGTCGCGCCAAAGGCACGATGTTc                                     >  1:4720105/1‑69 (MQ=255)

                                gAAGAGTCTGCCTACAGCCTGGATGCGGTCTATACCATTCAGGACGGTCGCGCCAAAGGCACGATGTTCa                                    >  1:548079/1‑70 (MQ=255)

                                   gagTCTGCCTACAGCCTGGATGCGGTCTATACCATTCAGGACGGTCGCGCCAAAGGCACGATGTTCAAACt                                <  1:1003684/71‑1 (MQ=255)

                                   gagTCTGCCTACAGCCTGGATGCGGTCTATACCATTCAGGACGGTCGCGCCAAAGGCACGATGTTCAAACt                                <  1:1354669/71‑1 (MQ=255)

                                        tGCCTACAGCCTGGATGCGGTCTATACCATTCAGGTCGGTCGCGCCAAAGGCACGATGTTCAAACTGCAtt                           >  1:4388973/1‑71 (MQ=255)

                                        tGCCTACAGCCTGGATGCGGTCTATACCATTCAGGACGGTCGCGCCaaa                                                 >  1:524297/1‑49 (MQ=255)

                                        tGCCTACAGCCTGGATGCGGTCTATACCATTCAGGACGGTCGCGCCaaa                                                 >  1:4517626/1‑49 (MQ=255)

                                        tGCCTACAGCCTGGATGCGGTCTATACCATTCAGGACGGTCGCGCCAAAGGCACGATGTTCAAACTGCAtt                           >  1:2156501/1‑71 (MQ=255)

                                        tGCCTACAGCCTGGATGCGGTCTATACCATTCAGGACGGTCGCGCCAAAGGCACGATGTTCAAACTGCAtt                           >  1:816646/1‑71 (MQ=255)

                                        tGCCTACAGCCTGGATGCGGTCTATACCATTCAGGACGGTCGCGCCAAAGGCACGATGTTCAAACTGCAtt                           >  1:1002949/1‑71 (MQ=255)

                                        tGCCTACAGCCTGGATGCGGTCTATACCATTCAGGACGGTCGCGCCAAAGGCACGATGTTCAAACTGCAtt                           >  1:3298518/1‑71 (MQ=255)

                                        tGCCTACAGCCTGGATGCGGTCTATACCATTCAGGACGGTCGCGCCAAAGGCACGATGTTCAAACTGCAtt                           >  1:2162073/1‑71 (MQ=255)

                                          ccTACAGCCTGGATGCGGTCTATACCATTCAGGACGGTCGCGCCAAAGGCACGATGTTCAAACTGCAttt                          <  1:568031/70‑1 (MQ=255)

                                          ccTACAGCCTGGATGCGGTCTATACCATTCAGGACGGTCGCGCCAAAGGCACGATGTTCAAACTGCAttt                          <  1:381740/70‑1 (MQ=255)

                                          ccTACAGCCTGGATGCGGTCTATACCATTCAGGACGGTCGCGCCAAAGGCACGATGTTCAAACTGCAttt                          <  1:1762450/70‑1 (MQ=255)

                                          ccTACAGCCTGGATGCGGTCTATACCATTCAGGACGGTCGCGCCAAAGGCACGATGTTCAAACTGCAttt                          <  1:24736/70‑1 (MQ=255)

                                          ccTACAGCCTGGATGCGGTCTATACCATTCAGGACGGTCGCGCCAAAGGCACGATGTTCAAACTGCAttt                          >  1:2588699/1‑70 (MQ=255)

                                          ccTACAGCCTGGATGCGGTCTATACCATTCAGGACGGTCGCGCCAAAGGCACGATGTTCAAACTGCAttt                          <  1:3267951/70‑1 (MQ=255)

                                          ccTACAGCCTGGATGCGGTCTATACCATTCAGGACGGTCGCGCCAAAGGCACGATGTTCAAACTGCAttt                          >  1:2913631/1‑70 (MQ=255)

                                          ccTACAGCCTGGATGCGGTCTATACCATTCAGGACGGTCGCGCCAAAGGCACGATGTTCAAACTGCAttt                          >  1:2876282/1‑70 (MQ=255)

                                          ccTACAGCCTGGATGCGGTCTATACCATTCAGGACGGTCGCGCCAAAGGCACGATGTTCAAACTGCAt                            <  1:3748736/68‑1 (MQ=255)

                                          ccTACAGCCTGGATGCGGACTATACCATTCAGGACGGTCGCGCCAAAGGCACGATGTTCAAACTGCAtt                           >  1:188278/1‑69 (MQ=255)

                                            tACAGCCTGGATGCGGTCTATACCATTCAGGACGGTcgcg                                                      <  1:346538/40‑1 (MQ=255)

                                            tACAGCCTGGATGCGGTCTATACCATTCAGGACGGTcgcg                                                      <  1:1409665/40‑1 (MQ=255)

                                            tACAGCCTGGATGCGGTCTATACCATTCAGGACGGTCGCGCCAAAGGCAc                                            <  1:4584231/50‑1 (MQ=255)

                                            tACAGCCTGGATGCGGTCTATACCATTCAGGACGGTCGCGCCAAAGGCAc                                            <  1:1273557/50‑1 (MQ=255)

                                             aCAGCCTGGATGCGGTCTATACCATTcaggctgtaggcagactcttcaatagtccggtttttgtcgtagta                      <  1:3846455‑M2/71‑46 (MQ=255)

                                              cAGCCTGGATGCGGTCTATACCATTCAGGACGGTCGCGCCAAAGGCACGATGTTCAAACTGCATTTCAcc                      >  1:773423/1‑70 (MQ=255)

                                              cAGCCTGGATGCGGTCTATACCATTCAGGACGGTCGCGCCAAAGGCACGATGTTCAAACTGCATTTCAcc                      >  1:4288324/1‑70 (MQ=255)

                                              cAGCCTGGATGCGGTCTATACCATTCAGGACGGTCGCGCCAAAGGCACGATGTTCAAACTGCATTTCAcc                      <  1:782006/70‑1 (MQ=255)

                                                   tGGATGCGGTCTATACCATTCAGGACGGTCGCGCCAAAGGCACGATGTTCAAACTg                               <  1:562447/56‑1 (MQ=255)

                                                   tGGATGCGGTCTATACCATTCAGGACGGTCGCGCCAAAGGCACGATGTTCAAACTGCATTTCACCGaa                   <  1:910081/68‑1 (MQ=255)

                                                   tGGATGCGGTCTATACCATTCAGGACGGTCGCGCCAAAGGCACGATGTTCAAACTGCATTTCACCGaa                   <  1:4737386/68‑1 (MQ=255)

                                                    ggATGCGGTCTATACCATTcaggctgtaggcagactcttc                                              <  1:219779‑M2/40‑22 (MQ=255)

                                                    ggATGCGGTCTATACCATTcaggctgtaggcagactcttc                                              <  1:1763199‑M2/40‑22 (MQ=255)

                                                    ggATGCGGTCTATACCATTcaggctgtaggcagactcttc                                              <  1:534050‑M2/40‑22 (MQ=255)

                                                    ggATGCGGTCTATACCATTCAGGACGGTCGCGCCAAAGGCACGATGTTCAAACTg                               <  1:3426618/55‑1 (MQ=255)

                                                     gATGCGGTCTATACCATTCAGGACGGTCGCGCCAAAGGCACGATGTTCaaa                                  >  1:697592/1‑51 (MQ=255)

                                                     gATGCGGTCTATACCATTCAGGACGGTCGCGCCAAAGGCACGATGTTCAAACTGCAttt                          >  1:2280757/1‑59 (MQ=255)

                                                      aTGCGGTCTATACCATTCAGGACGGTCGCGCCAAAGGCa                                             <  1:2112388/39‑1 (MQ=255)

                                                      aTGCGGTCTATACCATTCAGGACGGTCGCGCCAAAGGCa                                             <  1:2651136/39‑1 (MQ=255)

                                                      aTGCGGTCTATACCATTCAGGACGGTCGCGCCAAAGGCa                                             <  1:3013500/39‑1 (MQ=255)

                                                      aTGCGGTCTATACCATTCAGGACGGTCGCGCCAAAGGCa                                             <  1:1849619/39‑1 (MQ=255)

                                                      aTGCGGTCTATACCATTCAGGACGGTCGCGCCAAAGGCa                                             <  1:3396802/39‑1 (MQ=255)

                                                       tGCGGTCTATACCATTCAGGACGGTCGCGCCAAAGGCACGATGTTCAAACTGCATTTCACCGAATACGACa            <  1:1268424/71‑1 (MQ=255)

                                                          ggTCTATACCATTCAGGACGGTCGCGCCAAAGGCACGATGTTCAAACTGCATTTCACCGAATACGACAAc          >  1:1475041/1‑70 (MQ=255)

                                                          ggTCTATACCATTCAGGACGGTCACGCCAAAGGCACGATGTTCAAACTGCATTTCACCGAATACGACAAc          >  1:4420528/1‑70 (MQ=255)

                                                            tCTATACCATTCAGGACGGTCGCGCCAAAGGCACGATGTTCAAACTGCATTTCACCGAATACGACAACCAc       >  1:4361174/1‑71 (MQ=255)

                                                            tCTATACCATTCAGGACGGTCGCGCCAAAGGCACGATGTTCAAACTGCATTTCACCGAATACGACAACCAc       <  1:23236/71‑1 (MQ=255)

                                                            tCTATACCATTCAGGACGGTCGCGCCAAAGGCACGATGTTCAAACTGCATTTCACCGAATACGACAACCAc       >  1:4610912/1‑71 (MQ=255)

                                                            tCTATACCATTCAGGACGGTCGCGCCAAAGGCACGATGTTCAAACTGCATTTCACCGAATACGACAACCAc       <  1:164648/71‑1 (MQ=255)

                                                              tataGCATTCAGGACGGTCGCGCCAAAGGCACGATGtt                                      <  1:2523528/38‑1 (MQ=255)

                                                              tataCCATTCAGGACGGTCGCGCCAAAGGCACGATGtt                                      <  1:3542874/38‑1 (MQ=255)

                                                              tataCCATTCAGGACGGTCGCGCCAAAGGCACGATGTTCAAACTGCATTTCACCGaa                   >  1:1403747/1‑57 (MQ=255)

                                                              tataCCATTCAGGACGGTCGCGCCAAAGGCACGATGTTCAAACTGCATTTCACCGAAt                  <  1:4203451/58‑1 (MQ=255)

                                                              tataCCATTCAGGACGGTCGCGCCAAAGGCACGATGTTCAAACTGCATTTCACCGAAt                  <  1:1948307/58‑1 (MQ=255)

                                                              tataCCATTCAGGACGGTCGCGCCAAAGGCACGATGTTCAAACTGCATTTCACCGAATACGACAACCACTc     >  1:4288028/1‑71 (MQ=255)

                                                              tataCCATTCAGGACGGTCGCGCCAAAGGCACGATGTTCAAACTGCATTTCACCGAATACGACAACCACTc     >  1:2163936/1‑71 (MQ=255)

                                                              tataCCATTCAGGACGGTCGCGCCAAAGGCACGATGTTCAAACTGCATTTCACCGAATACGACAACCACTc     >  1:1402481/1‑71 (MQ=255)

                                                                taCCATTcaggctgtaggcagactcttcaatagtccggtttttgtcgtagtacgcatccggattgctct     >  1:1208666‑M2/1‑7 (MQ=255)

                                                                taCCATTcaggctgtaggcagactcttcaatagtccggtttttgtcgtagtacgcatccggattgctct     >  1:462956‑M2/1‑7 (MQ=255)

                                                                taCCATTCAGGACGGTCGCGCCAAAGGCACGATGTTCAAACTGCATTTCACCGAATACGACAACCACTcc    <  1:2674861/70‑1 (MQ=255)

                                                                taCCATTCAGGACGGTCGCGCCAAAGGCACGATGTTCAAACTGCATTTCACCGAATACGACAACCACTcc    >  1:3961040/1‑70 (MQ=255)

                                                                taCCATTCAGGACGGTCGCGCCAAAGGCACGATGTTCAAACTGCATTTCACCGAATACGACAACCACTc     <  1:809887/69‑1 (MQ=255)

                                                                taCCATTCAGGACGGTCGCGCCAAAGGCACGATGTTCAAACTGCATTTCACCGAATACGACAACCACTc     <  1:3459716/69‑1 (MQ=255)

                                                                  ccATTCAGGACGGTCGCGCCAAAGGCACGATGTTCAAACTGCATTTCACCGAATACGACAACCACTCCGa  <  1:1235235/70‑1 (MQ=255)

                                                                  ccATTCAGGACGGTCGCGCCAAAGGCACGATGTTCAAACTGCATTTCACCGAATACGACAACCACTCCGa  <  1:2622805/70‑1 (MQ=255)

                                                                  ccATTCAGGACGGTCGCGCCAAAGGCACGATGTTCAAACTGCATTTCACCGAATACGACAACCACTCCGa  >  1:2707130/1‑70 (MQ=255)

                                                                     ttCAGGACGGTCGCGCCAAAGGCACGATGTTCAAACTGCATTTCACCGAATAc                <  1:4747638/53‑1 (MQ=255)

                                                                      tCAGGACGGTCGCGCCAAAGGCACGATGTTCAAACTGCATTTCACCGAATACGACAACCACTcc    <  1:1260951/64‑1 (MQ=255)

                                                                      tCAGGACGGTCGCGCCAAAGGCACGATGTTCAAACTGCATTTCACCGAATACGACAACCACTcc    <  1:1769425/64‑1 (MQ=255)

                                                                      tCAGGACGGTCGCGCCAAAGGCACGATGTTCAAACTGCATTTCACCGAATACGACAACCACTcc    <  1:1893697/64‑1 (MQ=255)

CGGATGCGTACTACGACAAAAACCGGACTATTGAAGAGTCTGCCTACAGCCTGGATGCGGTCTATACCATTCAGGACGGTCGCGCCAAAGGCACGATGTTCAAACTGCATTTCACCGAATACGACAACCACTCCGA  >  minE/432815‑432950

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.