New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? minE = 560046 (0.890)15 (0.380)
+ACGCTGCGATTT
8/78 NT 29.4% intergenic (+70/+83) yaaX/yaaA hypothetical protein/conserved hypothetical protein
?minE 2636227 = 48 (0.930)intergenic (+47/‑51) ugpB/ugpA glycerol‑3‑phosphate transporter subunit/glycerol‑3‑phosphate transporter subunit

ACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  minE/5548‑5600
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGTAGGCCGGATAAGCGAAGCGCATCCGGCACA  >  minE/2636227‑2636259
                                                     ||||||||||||                                 
cgcATCCGGTATGTAACGCCTGATGCGACGCTGACGCGTCTTATCTGGCCTACACGCTGCGATTTTGTAGG                             <  1:2440899/68‑1
cgcATCCGGTATGTAACGCCTGATGCGACGCTGACGCGTCTTATCTGGCCTACACGCTGCGATTTTGTAGG                             <  1:2281548/68‑1
cgcATCCGGCATTCAACGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGCGCTGCGATTTTGTAGG                             <  1:3492425/68‑1
 gcATCCGGTATGTAACGCCTGATGCGACGCTGACGCGTCTTATCTGGCCTACACGCTGCGATTTTGTAGGC                            <  1:759492/69‑1
  cATCCGGCATTCAACGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACGCTGCGATTTTGTAGGCC                           <  1:719446/70‑1
   ATCCGGCATTCAACGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGCGCTGCGATT                                    <  1:315886/61‑1
   ATCCGGCATTCAACGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACGCTGCGATTT                                   <  1:392510/62‑1
     CCGGCATTCAACGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGCGCTGCGATTTTGTAGGCCGGA                        >  1:2010629/1‑71
        GCATTCAACGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACGCTGCGATTTTGTAGGCCGGAT                       >  1:579630/1‑69
          ATTCAACGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGCGCTGCGATTTTGTAGGCCGGATAAGC                   <  1:746257/71‑1
             caaCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGCGCTGCGATTTTGTAGGCCGGATAAGC                   >  1:317321/4‑68
                      ATGCGACGCTGGCGCGTCTTATCAGGCCTACACGCTGCGATTTTGTAGGCCGGATAAGCAAAGCGCATC         <  1:11235/69‑1
                      ATGCGACGCTGACGCGTCTTATCTGGCCTACACGCTGCGATTTTGTAGGCCGGATAAGCAAAGCGCATCCG       >  1:1996752/1‑71
                          GACGCTGACGCGTCTTATCTGGCCTACACGCTGCGATTTTGTAGGCCGGATAAGC                   <  1:1042922/55‑1
                          GACGCTGACGCGTCTTATCTGGCCTACACGCTGCGATT                                    >  1:1632913/1‑38
                            CGCTGGCGCGTCTTATCAGGCCTACACGCTGCGATTTTGTAGGCCGGATAAGCAAAGCGCATCCGGCACg  >  1:1249894/1‑69
                                        TTATCAGGCCTACGCGCTGCGATTTTGTAGGCCGGATAAGCAAAGCGCAT          <  1:2102570/50‑1
                                           TCAGGCCTACGCGCTGCGATTTTGTAGGCCGGATAAGCAAAGCGCA           <  1:165201/46‑1
                                                     ||||||||||||                                 
ACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  minE/5548‑5600
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGTAGGCCGGATAAGCGAAGCGCATCCGGCACA  >  minE/2636227‑2636259

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.