New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? minE = 567148 (0.930)18 (0.380) 10/94 NT 35.9% intergenic (+141/+12) yaaX/yaaA hypothetical protein/conserved hypothetical protein
?minE 2094909 = 20 (0.420)intergenic (‑58/+394) tdcG/rnpB L‑serine dehydratase 3/RNase P

TACGTTAATTCTGCAATATATTGAATCTGCATGCTTTTGTAGGCAGGATAAGGCGTTCACGCCGCATCCGGCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  minE/5598‑5671
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcatGAATAAAGCGCACTCAACAATCTGAAACCCGCCGGAACGGTTTATTACGTACATCAGGTAAAACTGA  >  minE/2094909‑2094975
                                                                                                                                             
TACGTTAATTCTGCAATATATTGAATCTGCATGCTTTTGTAGGCAGGATAAGGCGTTCACGCCGCATCCGG                                                                        >  1:2444461/1‑71
  cgcTAATTCTGCAATATATTGAATCTGCATGCTTTTGTAGGCAGGATAAGGCGTTCACGCCGCATCCGGCA                                                                      <  1:556490/68‑1
               ATATATTGAATCTGCATGCTTTTGTAGGCAGGATAAGGCGTTCACGCCGCATCCGG                                                                        <  1:1018048/56‑1
                TATATTGAATTTGCGTGCTTTTGTAGGCAGGATAAGGCGTTCACGCCGCATCCGGCATGAATAAAGCGCAC                                                        >  1:2025025/1‑71
                 ATATTGAATCTGCATGCTTTTGTAGGCAGGATAAGGCGTTCACGCCGCATCCGGCAT                                                                     >  1:1835342/1‑57
                  TATTGAATCTGCATGCTTTTGTAGGCAGGATAAGGCGTTCACGCCGCATCCGG                                                                        <  1:2988205/53‑1
                    TTGAATTTGCGTGCTTTTGTAGGCAGGATAAGGCGTTCACGCCGCATCCGGCATGAATAAAGCGCACTCA                                                     <  1:3227803/70‑1
                      GAATTTGCGTGCTTTTGTAGGCAGGATAAGGCGTTCACGCCGCATCCGGCATGAATAAAGCGCACT                                                       >  1:1493863/1‑66
                       AATTTGCGTGCTTTTGTAGGCAGGATAAGGCGTTCACGCCGCATCCGGCATGAATAAAGCGCACTCAACA                                                  <  1:1098384/70‑1
                        attTGCGTGCTTTTGTAGGCAGGATAAGGCGTTCACGCCGCATCCGGCATGAATAAAGCGCACTCAACAAT                                                <  1:258357/68‑1
                              gTGCTTTTGTAGGCAGGATAAGGCGTTCACGCCGCATCCGGCATGAATAAAGCGCACTCAACAATCTGAAA                                          <  1:444999/70‑1
                              gTGCTTTTGTAGGCAGGATAAGGCGTTCACGCCGCATCCGGCATGAATAAAGCGCACTCAACAATCTGAAA                                          <  1:468809/70‑1
                                            AGGATAAGGCGTTCACGCCGCATCCGGCATGAATAAAGCGCACTCAACAATCTGAAACCCGCCGGAACGGT                            >  1:1527521/1‑71
                                            AGGATAAGGCGTTCACGCCGCATCCGGCATGAATAAAGCGCACTCAACAATCTGAAACCCGCCGGAACGGT                            <  1:69107/71‑1
                                             GGATAAGGCGTTCACGCCTCATCCGGCATGAATAAAGCGCACTCAACAATCTGAAACCCGCCGGAACGGTT                           <  1:398199/71‑1
                                               ATAAGGCGTTCACGCCGCATCCGGCATGAATAAAGCGCACTCAACAATCTGAAACCCGCCGGAACGGTTTA                         <  1:1364289/71‑1
                                                TAAGGCGTTCACGCCGCATCCGGCATGAATAAAGCGCACTCAACAATCTGA                                            >  1:3417531/1‑51
                                                TAAGGCGTTCACGCCGCATCCGGCATGAATAAAGCGCACTCAACAATCTGA                                            >  1:2864997/1‑51
                                                  AGGCGTTCACGCCGCATCCGGCATGAATAAAGCGCACTCAACAATCTGAAACCCGCCGGAACGGTTTATTA                      >  1:17419/1‑71
                                                  AGGCGTTCACGCCGCATCCGGCATGAATAAAGCGCACTCAACAATCTGAAACCCGCCGGAACGGTTTATTA                      >  1:1562674/1‑71
                                                         CACGCCGCATCCGGCATGAATAAAGCGCACTCAACAATCTGAAACCCGCCGGAACGGTTTATTACGTACAT               >  1:2963388/1‑71
                                                         CACGCCGCATCCGGCATGAATAAAGCGCACTCAACAATCTGAAACCCGCCGGAACGGTTTA                         >  1:535937/1‑61
                                                         CACGCCGCATCCGGCATGAATAAAGCGCACTCAACAATCTGAAACCCGCCGGAACG                              >  1:1955216/1‑56
                                                                    CGGCATGAATAAAGCGCACTCAACAATCTGAAACCCGCCGGAACGGTTTATTACGTACATCAGGTAAAAC     <  1:1494372/70‑1
                                                                    CGGCATGAATAAAGCGCACTCAACAATCTGAAACCCGCCGGAACGGTTTATTACGTACATCAGGTAAAAC     <  1:1277008/70‑1
                                                                    CGGCATGAATAAAGCGCACTCAACAATCTGAAACCCGCCGGAACGGTTTATTACGTACATCAG            >  1:468484/1‑63
                                                                      GCATGAATAAAGCGCACTCAACAATCTGAAACCCGCCGGAACGGTTTATTACGTACATCAGGTAAAACTGA  >  1:1622411/1‑71
                                                                       CATGAATAAAGCGCACTCAACAATCTGAAACCCGCCGGAACGGTTTA                         <  1:3429042/47‑1
                                                                         TGAATAAAGCGCACTCAACAATCTGAAACCCGCCGGAACGGTTTATTACGTACATC              <  1:784417/56‑1
                                                                         TGAATAAAGCGCACTCAACAATCTGAAACCCGCCGGAACGGTT                           >  1:709503/1‑43
                                                                                                                                             
TACGTTAATTCTGCAATATATTGAATCTGCATGCTTTTGTAGGCAGGATAAGGCGTTCACGCCGCATCCGGCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  minE/5598‑5671
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcatGAATAAAGCGCACTCAACAATCTGAAACCCGCCGGAACGGTTTATTACGTACATCAGGTAAAACTGA  >  minE/2094909‑2094975

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.