| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | minE | 134415 = | 41 (0.790) | 4 (0.100) | 3/76 | NT | 13.7% | intergenic (‑74/+40) | panB/yadC | 3‑methyl‑2‑oxobutanoate hydroxymethyltransferase/predicted fimbrial‑like adhesin protein |
| ? | minE | 134452 = | 20 (0.520) | intergenic (‑111/+3) | panB/yadC | 3‑methyl‑2‑oxobutanoate hydroxymethyltransferase/predicted fimbrial‑like adhesin protein | |||||
TTTAAAGCCACCAGTACTTTCCAGGTAACCTATCCCTGATAACGTAGCAGCACTGTCACCTTCTGGCAGTGCTGCTACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < minE/134493‑134415‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagtgctgctacgTTATCAGGGATAGGTTACCTGGAAAGTACTGGTGGCTTTAAATTCGCCGGGTTCGATAGCAATATT > minE/134452‑134517 TTTAAAGCCACCAGTACTTTCCAGGTAACCTATCCCTGATAACGTAGCAGCACTGTCACCTTCTGGCAGTG < 1:1177113/71‑1TTTAAAGCCACCAGTACTTTCCAGGTAACCTATCCCTGATAACGTAGCAGCACTGTCACCTTCTGGCAGTG > 1:2344620/1‑71TTTAAAGCCACCAGTACTTTCCAGGTAACCTATCCCTGATAACGTAGCAGCACTGTCACCTTCTGGCAG > 1:1008563/1‑69 TTAAAGCCACCAGTACTTTCCAGGTAACCTATCCCTGATAACGTAGCAGCACTGTCACCTTCTGGCAGTGC > 1:1972098/1‑71 TAAAGCCACCAGTACTTTCCAGGTAACCTATCCCTGATAACGTAGCAGCACTGTCACCTTCTGGCAGTGCT > 1:1212902/1‑71 CCACCAGTACTTTCCAGGTAACCTATCCCTGATAACGTAGCAGCACTGTCACCTTCTGGCAGTGCTGCTAC < 1:2176242/71‑1 ACCAGTACTTTCCAGGTAACCTATCCCTGATAACGTAGCAGCACTGTCACCTTCTGGCAGTGCTGCTACG > 1:305057/1‑70 CACTGTCACCTTCTGGCAGTGCTGCTACGTTATCAGGGATAGGTTACCTGGA < 1:1377732/52‑1 CACTGTCACCTTCTGGCAGTGCTGCTACGTTATCAGGGATAGGTTACCTGGA < 1:2526288/52‑1 CTGTCACCTTCTGGCAGTGCTGCTACGTTATCAGGGATAGGTTACCTGGAAA > 1:2435373/1‑52 TCACCTTCTGGCAGTGCTGCTACGTTATCAGGGATAGGTTACCTGGAAAGTACT < 1:3690866/54‑1 CAGTGCTGCTACGTTATCAGGGATAGGTTACCTGGAAAGTACTGGTGGCTTTAAATTC > 1:3805274/1‑58 AGTGCTGCTACGTTATCAGGGATAGGTTACCTGGAAAGTACTGGTGGCTTTAAATTCGCCGGGTTCGATAG < 1:2196276/71‑1 AGTGCTGCTACGTTATCAGGGATAGGTTACCTGGAAAGTACTGGTGGCTTTAA > 1:3076353/1‑53 TGCTGCTACGTTATCAGGGATAGGTTACCTGGAAAGTACTGGTGGCTTTAAATTCGCCGGGTTCGATAGC > 1:682337/1‑70 GCTGCTACGTTATCAGGGATAGGTTACCTGGAAAGTACTGGT > 1:1955229/1‑42 GCTGCTACGTTATCAGGGATAGGTTACCTGGAAAGTACTGGT > 1:3242836/1‑42 CTGCTACGTTATCAGGGATAGGTTACCTGGAAAGTACTGGTGGCTTTAAATTCGCCGGGTTCGATAGCAA > 1:2006903/1‑70 CTACGTTATCAGGGATAGGTTACCTGGAAAGTACTGGTGG > 1:2230776/1‑40 TACGTTATCAGGGATAGGTTACCTGGAAAGTACTGGTGGCTTTAAA > 1:1178528/1‑46 ACGTTATCAGGGATAGGTTACCTGGAAAGTACTGGTGGCTTTAAATTCGCCGG > 1:1185069/1‑53 CGTTATCAGGGATAGGTTACCTGGAAAGTACTGGTGGCTTTAAATTCGCCGGGTTCGATAGCAATATT < 1:3501643/68‑1 CGTTATCAGGGATAGGTTACCTGGAAAGTACTGGTGGCTTTAAATTCGCCGGGTTCGATA > 1:2053394/1‑60 TTTAAAGCCACCAGTACTTTCCAGGTAACCTATCCCTGATAACGTAGCAGCACTGTCACCTTCTGGCAGTGCTGCTACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < minE/134493‑134415‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagtgctgctacgTTATCAGGGATAGGTTACCTGGAAAGTACTGGTGGCTTTAAATTCGCCGGGTTCGATAGCAATATT > minE/134452‑134517 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |