New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? minE 139150 =50 (0.960)5 (0.100) 3/102 NT 8.3% coding (1017/2598 nt) htrE predicted outer membrane usher protein
?minE 139171 = 61 (1.180)coding (996/2598 nt) htrE predicted outer membrane usher protein

TATTGTTACCATCGAAGAATCCGATGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  minE/139177‑139150
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AACAATAAGATCGCTGCCGTACCCTGACGGACTCAGATCATCAATGACGAAAGCGCCT  >  minE/139171‑139228
                                                                                      
TATTGTTACCATCGAAGAATCCGATGGCAACAATAAGATCGCTGCCGTACCCTGACGGACTCAGATCATC                  >  1:1962233/1‑70
     TTACCATCGAAGAATCCGATGGCAACAATAAGATCGCTGCCGTACCCTGACGGACTCAGATCATCAATG              <  1:1270731/69‑1
     TTACCATCGAAGAATCCGATGGCAACAATAAGATCGCTGCCGTACCCTGACGGACTCAGATCATCAATG              <  1:3566695/69‑1
     TTACCATCGAAGAATCCGATGGCAACAATAAGATCGCTGCCGTACCCTGACGGACTCAGATCATCAATG              <  1:3571184/69‑1
               AGAATCCGATGGTAACAATAAGATCGCTGCCGTACCCTGACGGACTCAGATCATCAATGACGAAAGCGCCT  <  1:2696007/71‑1
                                                                                      
TATTGTTACCATCGAAGAATCCGATGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  minE/139177‑139150
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AACAATAAGATCGCTGCCGTACCCTGACGGACTCAGATCATCAATGACGAAAGCGCCT  >  minE/139171‑139228

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.