| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | minE | = 188896 | 68 (1.310) | 19 (0.520) +GAACAGGGTCGCTAA |
10/72 | NT | 32.5% | coding (393/2142 nt) | ldcC | lysine decarboxylase 2, constitutive |
| ? | minE | = 924830 | 44 (0.850) | coding (516/589 nt) | yncA | predicted acyltransferase with acyl‑CoA N‑acyltransferase domain | |||||
TTGATAACATTACACCGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > minE/188877‑188896‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ATCAGACATCACTGGCGTTATGCACAAGGGTAACGCCAGTTCCCATCACATCAATGCTTCACAATATA < minE/924830‑924763 ||||||||||||||| tgGATAACATTACACCGCCGGAACAGGGTCGCTAAATCAGACATCACTGGCGTTATGCACAAGGGTAA < 1:323732/66‑1tgGATAACATTACACCGCCGGAACAGGGTCGCTAAATCAGACATCACTGGCGTTATGCACAAGGGTAA < 1:2661533/66‑1tgGATAACATTACACCGCCGGAACAGGGTCGCTAAATCAGACATCACTGGCGTTATGCACAAGGGT < 1:755998/64‑1tgGATAACATTACACCGCCGGAACAGGGTCGCTAAATCAGACATCACTGGCGTT < 1:3496992/52‑1 GATAACATTACACCGCCGGAACATGGTCGCTAAATCAGACATCACTGGCGTTATGCACAAGGGTAACGCC < 1:2943049/70‑1 GATAACATTACACCGCCGGAACAGGGTCGCTAAATCAGACATCACTGGCGTTATGCACAAGGGTAACGCC < 1:904919/70‑1 GATAACATTACACCGCCGGAACAGGGTCGCTAAATCAGACATCACTGGCGTTATGCACAAGG > 1:208328/1‑62 GATAACATTACACCGCCGGAACAGGGTCGCTAAATCAGACATCACTGGCGTTATG > 1:2166527/1‑55 GATAACATTACACCGCCGGAACAGGGTCGCTAAATCAGACATCACTGGCG < 1:982516/50‑1 CATTACACCGCCGGAACAGGGTCGCTAAATCAGACATCACTGGCGTTATGCACAA < 1:157736/55‑1 TTACACCGCCGGAACAGGGTCGCTAAATCAGACATCACTGGCGTTATGCACAAGGGTAACGCCAGTTCCCA > 1:51905/1‑71 TTACACCGCCGGAACAGGGTCGCTAAATCAGACATCACTGGCGTTATGCACAAGGGTAACGCCAGTTCCCA > 1:2378823/1‑71 TTACACCGCCGGAACAGGGTCGCTAAATCAGACATCACTGGCGTTATGCACAAGGGTAACGC < 1:3562128/62‑1 TTACACCGCCGGAACAGGGTCGCTAAATCAGACATCACTGGCG < 1:782067/43‑1 TACACCGCCGGAACAGGGTCGCTAAATCAGACATCACTGGCGTTATGCACAAGGGTAACGCCAGTTCCCAT > 1:3104144/1‑71 ACACCGCCGGAACAGGGTCGCTAAATCAGACATCACTGGCGTTATGCACAAGGGTAACGCCAGTTCCC < 1:1078176/68‑1 ACACCGCCGGAACAGGGTCGCTAAATCAGACATCACTGGCGTTATGCACAAGGGTAACGC > 1:2060289/1‑60 ACACCGCCGGAACAGGGTCGCTAAATCAGACATCACTGGCGTT > 1:2851517/1‑43 ACCGCCGGAACAGGGTCGCTAAATCAGACATCACTGGCGTTATGCACAAGGGTAACGCCAGTTCCCAT > 1:3004164/1‑68 CGCCGGAACAGGGTCGCTAAATCAGACATCACTGGCGTTATGCACAAGGGT > 1:304982/1‑51 CCGGAACAGGGTCGCTAAATCAGACATCACTGGCGTTATGCACAAGGGTAACGCCAGTTCCCATCACATCA < 1:2421793/71‑1 CGGAACAGGGTCGCTAAATCAGACATCACTGGCGTTATGCACAAGGGTAACGCCAGTTCCCATCACATCAA > 1:3793170/1‑71 GAACAGGGTCGCTAAATCAGACATCACTGGCGTTATGCACAAGGGTAACGCCAGTTCCCATCACATCAATG < 1:1966340/71‑1 ACAGGGTCGCTAAATCAGACATCACTGGCGTTATGCACAAGGGTAACGCCAGTTCCCATCACATCAATGCT > 1:3685625/1‑71 ACAGGGTCGCTAAATCAGACATCACTGGCGTTATGCACAAGGGTAACGCCAGTTCCCATCACATCAATGCT < 1:525724/71‑1 ACAGGGTCGCTAAATCAGACATCACTGGCGTTATGCACAAGGGTAACGCCAGTTCCCATCACATC > 1:2516412/1‑65 GCTAAATCAGACATCACTGGCGTTATGCACAAGGGTAACGCCAGTTCCCATCACATCAATGCTTC > 1:565671/1‑65 AAATCAGACATCACTGGCGTTATGCACAAGGGTAACGCCAGTTCCCATCACATCAATGCTTCACAATATA > 1:1867364/1‑70 ||||||||||||||| TTGATAACATTACACCGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > minE/188877‑188896‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ATCAGACATCACTGGCGTTATGCACAAGGGTAACGCCAGTTCCCATCACATCAATGCTTCACAATATA < minE/924830‑924763 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |