| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | minE | = 188896 | 68 (1.310) | 19 (0.520) +GAACAGGGTCGCTAA |
10/72 | NT | 32.5% | coding (393/2142 nt) | ldcC | lysine decarboxylase 2, constitutive |
| ? | minE | = 924830 | 44 (0.850) | coding (516/589 nt) | yncA | predicted acyltransferase with acyl‑CoA N‑acyltransferase domain | |||||
GGCAGGCGGAAGATATCGCCATTCGTATGCGTCAGTACACCGACGAATATCTTGATAACATTACACCGCCGTTCACGAAAGCCTTGTTTACCTACGTCAAAGAGCGGAAGTACACCTTTTGTACGCCGGGGCATATGGGCG > minE/188826‑188966 | ggCAGGCGGAAGATATCGCCATTCGTATGCGTCAGTACACCGACGAATATCTTGATAACATTACAccgccg < 1:1942422/71‑1 (MQ=255) aGGCGGAAGATATCGCCATTCGTATGCGTCAGTACACCGACGAATATCTTGATAACATTACACCGCCGtt > 1:571350/1‑70 (MQ=255) gCGGAAGATATCGCCATTCGTATGCGTCAGTACACCGACGAATATCTTGATAACATTACACCGCCGTTCAc > 1:1346772/1‑71 (MQ=255) ggAAGATATCGCCATTCGTATGCGTCAGTACACCGACGAATATCTTGATAACATTACACCGCCGTTCACg > 1:2032074/1‑70 (MQ=255) ggAAGATATCGCCATTCGTATGCGTCAGTACACCGACGAATATCTTGATAACATTACACCGCCGTTCACGa < 1:2483453/71‑1 (MQ=255) aaGATATCGCCATTCGTATGCGTCAGTACACCGACGAATATCTTGATAACATTACACCGCCGTTc < 1:2019839/65‑1 (MQ=255) aaGATATCGCCATTCGTATGCGTCAGTACACCGACGAATATCTTGATAACATTACACCGCCGTTCACGa > 1:2813793/1‑69 (MQ=255) aaGATATCGCCATTCGTATGCGTCAGTACACCGACGAATATCTTGATAACATTACACCGCCGTTCACGa > 1:1493470/1‑69 (MQ=255) aGATATCGCCATTCGTATGCGTCAGTACACCGACGAATATCTTGATAACATTACACCGCCGTTCACGAAAg < 1:3733213/71‑1 (MQ=255) gATATCGCCATTCGTATGCGTCAGTACACCGACGAATATCTTGATAACATTACACCGCCGTTCAc > 1:1128378/1‑65 (MQ=255) gATATCGCCACTCGTATGCGTCAGTACACCGACGAATATCTTGATAACATTACACCGCCGTTCACGAAAGc > 1:2330874/1‑71 (MQ=255) tCGCCATTCGTATGCGTCAGTACACCGACGAATATCTTGATAACATTACACCGCCGTTCACGAAAGCCtt < 1:2007135/70‑1 (MQ=255) tCGCCATTCGTATGCGTCAGTACACCGACGAATATCTTGATAACATTACACCGCCGTTCACGAAAGCCTTg < 1:1490283/71‑1 (MQ=255) cGCCATTCGTATGCGTCAGTACACCGACGAATATCTTGATAACATTACACCGCCGTTCACGAAAGCCTTGt > 1:956214/1‑71 (MQ=255) gCCATTCGTATGCGTCAGTACACCGACGAATATCTTGATAACATTACACCGCCGTTCACGAAAGCCTTGtt < 1:990805/71‑1 (MQ=255) ccATTCGTATGCGTCAGTACACCGACGAATATCTTGATAACATTACACCGCCGTTCACGAAAGCCTTGttt < 1:212704/71‑1 (MQ=255) cATTCGTATGCGTCAGTACACCGACGAATATCTTGATAACATTACACCGCCGTTCACGAAAGCCTTGttt < 1:1590429/70‑1 (MQ=255) cATTCGTATGCGTCAGTACACCGACGAATATCTTGATAACATTACACCGCCGTTCACGAAAGCCTTGTTTa > 1:2450356/1‑71 (MQ=255) aTTCGTATGCGTCAGTACACCGACGAATATCTTGATAACATTACACCGCCGTTCACGaaa < 1:1350515/60‑1 (MQ=255) aTTCGTATGCGTCAGTACACCGACGAATATCTTGATAACATTACACCGCCGTTCACGaaa < 1:37739/60‑1 (MQ=255) aTTCGTATGCGTCAGTACACCGACGAATATCTTGATAACATTACACCGCCGTTCACGAAAGCCt > 1:1442228/1‑64 (MQ=255) cGTATGCGTCAGTACACCGACGAATATCTTGATAACATTACACCGCCGTTCACGAAAGCCTTGTTTACCTa > 1:298808/1‑71 (MQ=255) gTATGCGTCAGTACACCGACGAATATCTTGATAACATTACACCGCCGTTCACGAAAGCCTTGTTTACCTa < 1:1500383/70‑1 (MQ=255) tGCGTCAGTACACCGACGAATATCTTGATAACATTACACCGCCGTTCACGAAAGCCTTGTTTACCTACGTc < 1:892841/71‑1 (MQ=255) tGCGTCAGTACACCGACGAATATCTTGATAACATTACACCGCCGTCCACGa < 1:3602983/51‑1 (MQ=255) cGTCAGTACACCGACGAATATCTTGATAACATTACACCGCCGTTCACGAAAGCCTTGTTTACCTACGTCaa < 1:2037382/71‑1 (MQ=255) cGTCAGTACACCGACGAATATCTTGATAACATTACACCGCCGTTCACGAAAGCCTTGTTTACCTACGTCaa < 1:1771052/71‑1 (MQ=255) gTCAGTACACCGACGAATATCTTGATAACATTACACCGCCGTTCACGAAAGCCTTGTTTACCTACGTCaaa < 1:2812206/71‑1 (MQ=255) cAGTACACCGACGAATATCTTGATAACATTACACCGCCGTTCACGAAAGCCTTGTTTACCTACGTCaaa > 1:2087477/1‑69 (MQ=255) cAGTACACCGACGAATATCTTGATAACATTACACCGCCGTTCACGAAAGCCTTGTTTACCTACGTCaaa > 1:247925/1‑69 (MQ=255) aGTACACCGACGAATATCTTGATAACATTACACCGCCGTTCACGAAAGCCTTGTTTACCTACGTCAAaga < 1:1621042/70‑1 (MQ=255) cacCGCCGAATATCTTGATAACATTACACCGCCGTTCAc > 1:2855834/1‑39 (MQ=255) cacCGACGAATATCTTGATAACATTACACCGCCGTTCCCGAAAGCCTTGTTTACCTACGTCAAAGAGCg > 1:1291990/1‑69 (MQ=255) cacCGACGAATATCTTGATAACATTACACCGCCGTTCACGAAAGCCTTGTTTACCTACGTCAAAGAGCgg > 1:1287430/1‑70 (MQ=255) acCGACGAATATCTTGATAACATTACACCGCCGTTCACGAAAGCCTTGTTTACCTACGTCa > 1:183514/1‑61 (MQ=255) acCGACGAATATCTTGATAACATTACACCGCCGTTCACGAAAGCCTTGTTTACCTACGTCAAAGAGCgg < 1:1476707/69‑1 (MQ=255) cgacgaATATCTTGATAACATTACACCGCCGTTCACGAAAg < 1:2871133/41‑1 (MQ=255) gacgaATATCTTGATAACATTACACCGCCGTTCACGAAAGCCTTGTTTACCTACGTCAAAGAGCGGAAg < 1:1957669/69‑1 (MQ=255) atatCTTGATAACATTACACCGCCGTTCACGAAAGCCTTGTTTACCTACGTCAAAGAGCGGAAGTACACCt < 1:3041220/71‑1 (MQ=255) atatCTTGATAACATTACACCGCCGTTCACGAAAGCCTTGTTTACCTACGTCAAAGAGCGGAAGTACACCt > 1:1990692/1‑71 (MQ=255) atatCTTGATAACATTACACCGCCGTTCACGAAAGCCTTGTTTACCTACGTCAAAGAGCGGAAGTACACCt < 1:2527441/71‑1 (MQ=255) tatCTTGATAACATTACACCGCCGTTCACGAAAGCCTTg < 1:202779/39‑1 (MQ=255) tatCTTGATAACATTACACCGCCGTTCACGAAAGCCTTGttt < 1:3279324/42‑1 (MQ=255) tatCTTGATAACATTACACCGCCGTTCACGAAAGCCTTGttt < 1:2089137/42‑1 (MQ=255) tatCTTGATAACATTACACCGCCGTTCACGAAAGCCTTGttt < 1:1151828/42‑1 (MQ=255) tatCTTGATAACATTACACCGCCGTTCACGAAAGCCTTGttt < 1:3849078/42‑1 (MQ=255) tatCTTGATAACATTACACCGCCGTTCACGAAAGCCTTGttt < 1:832961/42‑1 (MQ=255) tatCTTGATAACATTACACCGCCGTTCACGAAAGCCTTGTTTACCTACGTCAAAGAGCGGAAGTACACCtt < 1:3126802/71‑1 (MQ=255) tatCTTGATAACATTACACCGCCGTTCACGAAAGCCTTGTTTACCTACGTCAAAGAGCGGAAGTACACCtt < 1:843501/71‑1 (MQ=255) tatCTTGATAACATTACACCGCCGTTCACGAAAGCCTTGTTTACCTACGTCAAAGAGCGGAAGTACACCtt < 1:1474439/71‑1 (MQ=255) tatCTTGATAACATTACACCGCCGTTCACGAAAGCCTTGTTTACCTACGTCAAAGAGCGGAAGTACACCtt < 1:1391680/71‑1 (MQ=255) tggatAACATTACACCGCCGgaacagggtcgctaaatcagacatcactggcgttatgcacaagggtaa < 1:2661533‑M1/66‑49 (MQ=255) tggatAACATTACACCGCCGgaacagggtcgctaaatcagacatcactggcgttatgcacaagggtaa < 1:323732‑M1/66‑49 (MQ=255) tggatAACATTACACCGCCGgaacagggtcgctaaatcagacatcactggcgttatgcacaagggt < 1:755998‑M1/64‑47 (MQ=255) tggatAACATTACACCGCCGgaacagggtcgctaaatcagacatcactggcgtt < 1:3496992‑M1/52‑35 (MQ=255) tGATAACATTACACCGCCGTTCACGAAAGCCTTGTTTACCTACGTCAAAGAGCGGAAGt < 1:3574518/59‑1 (MQ=255) gATAACATTACACCGCCGgaacatggtcgctaaatcagacatcactggcgttatgcacaagggtaacgcc < 1:2943049‑M1/70‑53 (MQ=255) gATAACATTACACCGCCGgaacagggtcgctaaatcagacatcactggcgttatgcacaagggtaacgcc < 1:904919‑M1/70‑53 (MQ=255) gATAACATTACACCGCCGgaacagggtcgctaaatcagacatcactggcgttatgcacaagg > 1:208328‑M1/1‑18 (MQ=255) gATAACATTACACCGCCGgaacagggtcgctaaatcagacatcactggcgttatg > 1:2166527‑M1/1‑18 (MQ=255) gATAACATTACACCGCCGgaacagggtcgctaaatcagacatcactggcg < 1:982516‑M1/50‑33 (MQ=255) gATAACATTACACCGCCGTTCACGAAAGCCTTGTTTACCTACGTCAAAGAGCGGAAGTACACCTTTTg < 1:1096354/68‑1 (MQ=255) gATAACATTACACCGCCGTTCACGAAAGCCTTGTTTACCTACGTCAAAGAGCGGAAGTACACCTTTTg < 1:2293533/68‑1 (MQ=255) aTAACATTACACCGCCGTTCACGAAAGCCTTGTTTACCt < 1:2391467/39‑1 (MQ=255) aTAACATTACACCGCCGTTCACGAAAGCCTTGTTTACCTACGTCAAAGAGCGGAAGTACACCTTTTGTACg > 1:2335409/1‑71 (MQ=255) aCATTACACCGCCGTTCACGAAAGCCTTGTTTACCTACGTCAAAGAGCGGAAGTACACCTTTTGTACGCCg < 1:770749/71‑1 (MQ=255) aCATTACACCGCCGTTCACGAAAGCCTTGTTTACCTACGTCAAAGAGCGGAAGTACACCTTTTGTACGCCg < 1:2498726/71‑1 (MQ=255) cATTACACCGCCGgaacagggtcgctaaatcagacatcactggcgttatgcacaa < 1:157736‑M1/55‑43 (MQ=255) cATTACACCGCCGTTCACGAAAGCCTTGTTTACCTACg > 1:3661531/1‑38 (MQ=255) cATTACACCGCCGTTCACGAAAGCCTTGTTTACCTACGt > 1:3162180/1‑39 (MQ=255) cATTACACCGCCGTTCACGAAAGCCTTGTTTACCTACGt > 1:1743368/1‑39 (MQ=255) cATTACACCGCCGTTCACGAAAGCCTTGTTTACCTACGTCAAAGAGCGGAAGTa > 1:3763812/1‑54 (MQ=255) aTTACACCGCCGTTCACGAAAGCCTTGTTTACCTACGTCAAAGAGCGGAAGTACACCTTTTGTACGCCggg < 1:435218/71‑1 (MQ=255) aTTACACCGCCGTTCACGAAAGCCTTGTTTACCTACGTCAAAGAGCGGAAGTACACCTTTTGTACGCCggg < 1:3798247/71‑1 (MQ=255) ttACACCGCCGgaacagggtcgctaaatcagacatcactggcgttatgcacaagggtaacgccagttccca > 1:2378823‑M1/1‑11 (MQ=255) ttACACCGCCGgaacagggtcgctaaatcagacatcactggcgttatgcacaagggtaacgccagttccca > 1:51905‑M1/1‑11 (MQ=255) ttACACCGCCGgaacagggtcgctaaatcagacatcactggcgttatgcacaagggtaacgc < 1:3562128‑M1/62‑52 (MQ=255) ttACACCGCCGgaacagggtcgctaaatcagacatcactggcg < 1:782067‑M1/43‑33 (MQ=255) tACACCGCCGgaacagggtcgctaaatcagacatcactggcgttatgcacaagggtaacgccagttcccat > 1:3104144‑M1/1‑10 (MQ=255) tACACCGCCGTTCACGAAAGCCTTGTTTACCTACGTCAAAGAGCGGAAGTACACCTTTTg < 1:1999512/60‑1 (MQ=255) tACACCGCCGTTCACGAAAGCCTTGTTTACCTACGTCAAAGAGCGGAAGTACACCTTTTGTACGCCgggg > 1:1302525/1‑70 (MQ=255) acacCGCCGgaacagggtcgctaaatcagacatcactggcgttatgcacaagggtaacgccagttccc < 1:1078176‑M1/68‑60 (MQ=255) acacCGCCGgaacagggtcgctaaatcagacatcactggcgttatgcacaagggtaacgc > 1:2060289‑M1/1‑9 (MQ=255) acacCGCCGgaacagggtcgctaaatcagacatcactggcgtt > 1:2851517‑M1/1‑9 (MQ=255) acacCGCCGTTCACGAAAGCCTTGTTTACCTACGTCAAAGAGCGGAAGTaca > 1:2199488/1‑52 (MQ=255) acacCGCCGTTCACGAAAGCCTTGTTTACCTACGTCAAAGAGCGGAAGTACACCTTTTGTACGCCGGGGCa > 1:912592/1‑71 (MQ=255) cacCGCCGTTCACGAAAGCCTTGTTTACCTACGTCAAAGAGCGGAAGTACACCTTTTGTACGCCGGGGCat < 1:133241/71‑1 (MQ=255) cacCGCCGTTCACGAAAGCCTTGTTTACCTACGTCAAAGAGCGGAAGTACACCTTTTGTACGCCGGGGCa < 1:1905831/70‑1 (MQ=255) cacCGCCGTTCACGAAAGCCTTGTTTACCTACGTCAAAGAGCGGAAGTACACCTTTTGTACGCCGGGGCa < 1:1553899/70‑1 (MQ=255) cacCGCCGTTCACGAAAGCCTTGTTTACCTACGTCAAAGAGCGGAAGTACACCTTTTGTACGCCGGGGCa < 1:2742758/70‑1 (MQ=255) acCGCCGgaacagggtcgctaaatcagacatcactggcgttatgcacaagggtaacgccagttcccat > 1:3004164‑M1/1‑7 (MQ=255) acCGCCGTTCACGAAAGCCTTGTTTACCTACGTCAAAGAGCGGAAGTac < 1:598306/49‑1 (MQ=255) ccgccgTTCACGAAAGCCTTGTTTACCTACGTCAAAGAGCGGaa < 1:3644337/44‑1 (MQ=255) cgccggaacagggtcgctaaatcagacatcactggcgttatgcacaagggt > 1:304982‑M1/1‑5 (MQ=255) cgccgTTCACGAAAGCCTTGTTTACCTACGTCAAAGAGCGGAAGTACACCTTTTGTACGCCGGGGCATATg < 1:1041705/71‑1 (MQ=255) gccgTTCACGAAAGCCTTGTTTACCTACGTCAAAGAGCGGAAGTACACCTTTTGTACGCCGGGGCATATgg < 1:307124/71‑1 (MQ=255) gccgTTCACGAAAGCCTTGTTTACCTACGTCAAAGAGCGGAAGTACACCTTTTGTACGCCGGGGCATATgg < 1:2732666/71‑1 (MQ=255) ccggaacagggtcgctaaatcagacatcactggcgttatgcacaagggtaacgccagttcccatcacatca < 1:2421793‑M1/71‑69 (MQ=255) cggaacagggtcgctaaatcagacatcactggcgttatgcacaagggtaacgccagttcccatcacatcaa > 1:3793170‑M1/1‑2 (MQ=255) gTTCACGAAAGCCTTGTTTACCTACGTCAAAGAGCGGAAGTACACCTTTTGTACGCCGGGGCATATGggcg > 1:850440/1‑71 (MQ=255) | GGCAGGCGGAAGATATCGCCATTCGTATGCGTCAGTACACCGACGAATATCTTGATAACATTACACCGCCGTTCACGAAAGCCTTGTTTACCTACGTCAAAGAGCGGAAGTACACCTTTTGTACGCCGGGGCATATGGGCG > minE/188826‑188966 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |