| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | minE | = 1216891 | 54 (1.040) | 3 (0.070) | 3/90 | NT | 5.2% | coding (1842/2049 nt) | prc | carboxy‑terminal protease for penicillin‑binding protein 3 |
| ? | minE | = 1216912 | 61 (1.330) | coding (1821/2049 nt) | prc | carboxy‑terminal protease for penicillin‑binding protein 3 | |||||
CAACTCCGGTTTACCTTCGCGTTTAAAGCGTTCGTTCAAACGCGCCAGACGCGTCGCATCATCTTCATTATTCTCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > minE/1216816‑1216891‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttctctGAATTACGCTGTGCGTGAGAAAGAGAATAATGAAGATGATGCGACGCGTCTGGCGCGTTTGAACGAACGC < minE/1216912‑1216843 CAACTCCGGTTTACCTTCGCGTTTAAAGCGTTCGTTCAAACGCGCCAGACGCGTCGCATCATCTTCATTAT > 1:177260/1‑71 ACTCCGGTTTACCTTCGCGTTTAAAGCGTTCGTTCAAACGCGCCAGACGCGTCGCATCATCTTCATTATTC > 1:1871339/1‑71 ACTCCGGTTTACCTTCGCGTTTAAAGCGTTCGTTCAAACGCGCCAGACGCGTCGCATCATCTTCATTATTC > 1:2454809/1‑71 ACTCCGGTTTACCTTCGCGTTTAAAGCGTTCGTTCAAACGCGCCAGACGCGTCGCATCATCTTCATTATTC > 1:541993/1‑71 CCTTCGCGTTTAAAGCGTTCGTTCAAACGCGCCAGACGCGTCGCATCATCTTCATTATTCTCT > 1:1935803/1‑63 TTTAAAGCGTTCGTTCAAACGCGCCAGACGCGTCGCATCATCTTCATTATTCTCTGAATTACGCTGTGCGT > 1:521964/1‑71 TTCGTTCAAACGCGCCAGACGCGTCGCATCATCTTCATTATTCT < 1:1022104/44‑1 AAACGCGCCAGACGCGTCGCATCATCTTCATTATTCTCTGAACTACGCTGTGCGTGAGAAAGAGAATAATG < 1:1436012/71‑1 CGCATAATCTTCATTATTCTCTGAATTACGCTGTGCGTGAGAAAGAGAATAATG > 1:1560432/1‑54 TCTCTGAATTACGCTGTGCGTGAGAAAGAGAATAATGAAGATGATTCGACGCGTCTGGCGCGTTTGAACG < 1:1900904/70‑1 TCTCTGAATTACGCTGTGCGTGAGAAAGAGAATAATGAAGATGATGCGACGCGTCTGGCGCGTTTGAA > 1:1763242/1‑68 TCTCTGAATTACGCTGTGCGTGAGAAAGAGAATAATGAAGATGATGCGACGCGTCTGGCGCGTTTGAA > 1:3429508/1‑68 TCTCTGAATTACGCTGTGCGTGAGAAAGAGAATAATGAAGATGA > 1:270098/1‑44 TCTCTGAATTACGCTGTGCGTGAGAAAGAGAATAATGAAGATGA > 1:3537424/1‑44 CTCTGAATTACGCTGTGCGTGAGAAAGAGAATAATGAAGATGA > 1:3584142/1‑43 TCTGAATTACGCTGTGCGTGAGAAAGAGAATAATGAAGATGATGCGACGCGTCTGGCGCGTTTGAACGAAC > 1:424399/1‑71 TGAATTACGCTGTGCGTGAGAAAGAGAATAATGAAGATGATGCGACGCGTCTGGCGCGTTTGAACGAACGC > 1:72823/1‑71 TGAATTACGCTGTGCGTGAGAAAGAGAATAATGAAGATGATGCGACGCGTCTGGCGCGTTT < 1:764798/61‑1 CAACTCCGGTTTACCTTCGCGTTTAAAGCGTTCGTTCAAACGCGCCAGACGCGTCGCATCATCTTCATTATTCTCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > minE/1216816‑1216891‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttctctGAATTACGCTGTGCGTGAGAAAGAGAATAATGAAGATGATGCGACGCGTCTGGCGCGTTTGAACGAACGC < minE/1216912‑1216843 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |