| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | minE | = 1216891 | 54 (1.040) | 3 (0.070) | 3/90 | NT | 5.2% | coding (1842/2049 nt) | prc | carboxy‑terminal protease for penicillin‑binding protein 3 |
| ? | minE | = 1216912 | 61 (1.330) | coding (1821/2049 nt) | prc | carboxy‑terminal protease for penicillin‑binding protein 3 | |||||
GTTTACCTTCGCGTTTAAAGCGTTCGTTCAAACGCGCCAGACGCGTCGCATCATCTTCATTATTCTCTTTCTCACGCACAGCGTAATTCAGAGAAACGATATTGCGCTTGTCCTTCATAGCGTTGAAGCGCGCGATAT > minE/1216824‑1216961 | gTTTACCTTCGCGTTTAAAGCGTTCGTTCAAACGCGCCAGACGCGTAGCATCATCTTCATTATTCTCTTtc > 1:3413689/1‑71 (MQ=255) ttACCTTCGCGTTTAAAGCGTTCGTTCAAACGCGCCAGACGCGTCGCATCATCTTCATTATTCTCTTtct > 1:3470444/1‑70 (MQ=255) ccTTCGCGTTTAAAGCGTTCGTTCAAACGCGCCAGACGCGTCGCATCATCTTCATTATTCTCT > 1:1935803‑M1/1‑63 (MQ=255) tCGCGTTTAAAGCGTTCGTTCAAACGCGCCAGACGCGTCGCATCATCTTCATTATTCTCTTTCTCACGca > 1:3822011/1‑70 (MQ=255) cgcgTTTAAAGCGTTCGTTCAAACGCGCCAGACGCGTCGCATCATCTTCATTATTCTCTTTCTCACGca > 1:3828259/1‑69 (MQ=255) cgcgTTTAAAGCGTTCGTTCAAACGCGCCAGACGCGTCGCATCATCTTCATTATTCTCTTTCTAACGca < 1:559983/69‑1 (MQ=255) gcgTTTAAAGCGTTCGTTCAAACGCGCCAGACGCGTCGCATCATCTTCATTATTCTCTTTCTCACGCACAg > 1:920427/1‑71 (MQ=255) gcgTTTAAAGCGTTCGTTCAAACGCGCCAGACGCGTCGCATCATCTTCATTATTCTCTTTCTCACGCACAg > 1:287080/1‑71 (MQ=255) gTTTAAAGCGTTCGTTCAAACGCGCCAGACGCGTCGCATCATCTTCATTATTCTCTTTCTCACGCACAGCg < 1:866258/71‑1 (MQ=255) tttAAAGCGTTCGTTCAAACGCGCCAGACGCGTCGCATCATCTTCATTATTCTCTgaattacgctgtgcgt > 1:521964‑M1/1‑55 (MQ=255) tttAAAGCGTTCGTTCAAACGCGCCAGACGCGTCGCATCATCTTCATTATTCTCTTTCTCa > 1:664303/1‑61 (MQ=255) ttAAAGCGTTCGTTCAAACGCGCCAGACGCGTCGCATCATCTTCATTATTCTCTTTCTCACGCACAGCGt > 1:629010/1‑70 (MQ=255) ttAAAGCGTTCGTTCAAACGCGCCAGACGCGTCGCATCATCTTCATTATTCTCTTTCTCACGCACAGCGt > 1:3548295/1‑70 (MQ=255) tAAAGCGTTCGTTCAAACGCGCCAGACGCGTCGCATCATCTTCATTATTCTCTTTCTCACGCACAGCGTaa > 1:1447410/1‑71 (MQ=255) tAAAGCGTTCGTTCAAACGCGCCAGACGCGTCGCATCATCTTCATTATTCTCTTTCTCACGCACAGCGTaa > 1:1967209/1‑71 (MQ=255) aaaGCGTTCGTTCAAACGCGCCAGACGCGTCGCATCATCTTCATTATTCTCTTTCTCACGCACAGCGTaa < 1:2210704/70‑1 (MQ=255) aaaGCGTTCGTTCAAACGCGCCAGACGCGTCGCATCATCTTCATTATTCTCTTTCTCACGCACAGCGTAAt > 1:290292/1‑71 (MQ=255) gCGTTCGTTCAAACGCGCCAGACGCGTCGCATCATCTTCATTATTCTCTTTCTCACGCACAGCGTAATTCa > 1:72823‑M2/1‑70 (MQ=255) gttcgttcAAACGCGCCAGACGCGTCGCATCATCTTCATTATTCTCTTTCTCACGCACAGCGTAATTCaga > 1:424399‑M2/1‑68 (MQ=255) cgttcAAACGCGCCAGACGCGTCGAATCATCTTCATTATTCTCTTTCTCACGCACAGCGTAATTCagaga < 1:1900904‑M2/70‑6 (MQ=255) ttcAAACGCGCCAGACGCGTCGCATCATCTTCATTATTCTCTTTCTCAc < 1:2153676/49‑1 (MQ=255) ttcAAACGCGCCAGACGCGTCGCATCATCTTCATTATTCTCTTTCTCACGCACAGCGTAATTCagaga > 1:1763242‑M2/1‑63 (MQ=255) ttcAAACGCGCCAGACGCGTCGCATCATCTTCATTATTCTCTTTCTCACGCACAGCGTAATTCagaga > 1:3429508‑M2/1‑63 (MQ=255) ttcAAACGCGCCAGACGCGTCGCATCATCTTCATTATTCTCTTTCTCACGCACAGCGTAATTCAGAGAAAc < 1:2223124/71‑1 (MQ=255) tcAAACGCGCCAGACGCGTCGCATCATCTTCATTATTCTCTTTCTCACGCACAGCGTAATTCAGAGAAAc > 1:3310068/1‑70 (MQ=255) cAAACGCGCCAGACGCGTCGCATCATCTTCATTATTCTCTTTCTCACGc > 1:3847866/1‑49 (MQ=255) cAAACGCGCCAGACGCGTCGCATCATCTTCATTATTCTCTTTCTCACGCACAGCGTAATTCAGAGAAACGa > 1:2471155/1‑71 (MQ=255) aaaCGCGCCAGACGCGTCGCATCATCTTCATTATTCTCTgaactacgctgtgcgtgagaaagagaataatg < 1:1436012‑M1/71‑33 (MQ=255) aaaCGCGCCAGACGCGTCGCATCATCTTCATTATTCTCTTTCTCACGCACAGCGTAATTCa < 1:764798‑M2/61‑2 (MQ=255) aaaCGCGCCAGACGCGTCGCATCATCTTCATTATTCTCTTTCTCACGCACAGCGTAATTCAGAGAAACGat < 1:173803/71‑1 (MQ=255) gcgcCAGACGCGTCGCATCATCTTCATTATTCTCTTTCTCACGCACAGCGTAATTCAGAGAAACGATATTg > 1:2071200/1‑71 (MQ=255) aGACGCGTCGCATCATCTTCATTATTCTCTTTCTCACGCACAGCGTAATTCAGAGAAACGATATTGCGCtt < 1:2328354/71‑1 (MQ=255) aGACGCGTCGCATCATCTTCATTATTCTCTTTCTCACGCACAGCGTAATTCAGAGAAACGATATTGCGCtt < 1:1124063/71‑1 (MQ=255) gACGCGTCGCATCATCTTCATTATTCTCTTTCTCACGCACAGCGTAATTCAGAGAAACGATATTgcgc > 1:1499956/1‑68 (MQ=255) gACGCGTCGCATCATCTTCATTATTCTCTTTCTCACGCACAGCGTAATTCAGAGAAACGATATTGCGCTTg > 1:3533916/1‑71 (MQ=255) gcgTCGCATCATCTTCATTATTCTCTTTCTCACGCACAGCGTAATTCAGAGAAACGATATTGCGCTTGTcc < 1:370384/71‑1 (MQ=255) gagTCGCATCATCTTCATTATTCTCTTTCTCACGCACAGCGTAATTCAGAGAAACGATATTGCGCTTGTcc < 1:152096/69‑1 (MQ=255) tCGCATCATCTTCATTATTCTCTTTCTCACGCACAGCGTAATTCAGAGAAACGATATTGCGCTTGTCCtt < 1:3855231/70‑1 (MQ=255) tCGCATCATCTTCATTATTCTCTTTCTCACGCACAGCGTAATTCAGAGAAACGATATTGCGCTTGTCCTTc < 1:1934570/71‑1 (MQ=255) cGCATCATCTTCATTATTCTCTTTCTCACGCACAGCGTAATTCAGAGAAACGATATTGCGCTTGTCCTTCa > 1:2056008/1‑71 (MQ=255) cGCATCATCTTCATTATTCTCTTTCTCACGCACAGCGTAATTCAGAGAAACGATATTGCGCTTGTCCTTCa > 1:975753/1‑71 (MQ=255) cGCATAATCTTCATTATTCTCTgaattacgctgtgcgtgagaaagagaataatg > 1:1560432‑M1/1‑22 (MQ=255) gCATCATCTTCATTATTCTCTTTCTCACGCACAGCGTAATTCAGAGAAACGata > 1:3394816/1‑54 (MQ=255) gCATCATCTTCATTATTCTCTTTCTCACGCACAGCGTAATTCAGAGAAACGATATTgc < 1:2021199/58‑1 (MQ=255) gCATCATCTTCATTATTCTCTTTCTCACGCACAGCGTAATTCAGAGAAACGATATTGCGCTTGTCCtt < 1:3331341/68‑1 (MQ=255) gCATCATCTTCATTATTCTCTTTCTCACGCACAGCGTAATTCAGAGAAACGATATTGCGCTTGTCCTTCa > 1:1059217/1‑70 (MQ=255) gCATCATCTTCATTATTCTCTTTCTCACGCACAGCGTAATTCAGAGAAACGATATTGCGCTTGTCCTTCa > 1:1903692/1‑70 (MQ=255) tcatcTTCATTATTCTCTTTCTCACGCACAGCGTAATTCagaga > 1:270098‑M2/1‑39 (MQ=255) tcatcTTCATTATTCTCTTTCTCACGCACAGCGTAATTCagaga > 1:3537424‑M2/1‑39 (MQ=255) tcatcTTCATTATTCTCTTTCTCACGCACAGCGTAATTCagag > 1:3584142‑M2/1‑39 (MQ=255) tcatcTTCATTATTCTCTTTCTCACGCACAGCGTAATTCAGAGAAACGATATTGCGCTTGTCCTTCATa > 1:411750/1‑69 (MQ=255) tcatcTTCATTATTCTCTTTCTCACGCACAGCGTAATTCAGAGAAACGATATTGCGCTTGTCCTTCATAGc > 1:456921/1‑71 (MQ=255) tcatcTTCATTATTCTCTTTCTCACGCACAGCGTAATTCAGAGAAACGATATTGCGCTTGTCCTTCATAGc < 1:865922/71‑1 (MQ=255) catcTTCATTATTCTCTTTCTCACGCACAGCGTAATTCAGAGAAACGATATTGCGCTTGTCCTTCATAGCg > 1:2621920/1‑71 (MQ=255) catcTTAATTATTCTCTTTCTCACGCACAGCGTAATTCAGAGAAACGATATTGCGCTTGTCCTTCATAGCg > 1:506550/1‑71 (MQ=255) atcTTCATTATTCTCTTTCTCACGCACAGCGTAATTCAGAGAAACGATATTGCGCTTGTCCTTCATAGCg < 1:3398854/70‑1 (MQ=255) atcTTCATTATTCTCTTTCTCACGCACAGCGTAATTCAGAGAAACGATATTGCGCTTGTCCTTCATAGCGt > 1:3107186/1‑71 (MQ=255) tCATTATTCTCTTTCTCACGCACAGCGTAATTCAGAGAAACGATATTgc > 1:623911/1‑49 (MQ=255) tCATTATTCTCTTTCTCACGCACAGCGTAATTCAGAGAAACGATATTgc > 1:3705351/1‑49 (MQ=255) tCATTATTCTCTTTCTCACGCACAGCGTAATTCAGAGAAACGATATTGCGCTTGTCCTTCATAGCGTTg > 1:1073065/1‑69 (MQ=255) cATTATTCTCTTTCTCACGCACAGCGTAGTTCagagaataatgaagatgatgcgacgcgtctggcgcgttt < 1:1436012‑M2/71‑40 (MQ=255) cATTATTCTCTTTCTCACGCACAGCGTAATTCagagaataatgaagattatgcg > 1:1560432‑M2/1‑32 (MQ=255) cATTATTCTCTTTCTCACGCACAGCGTAATTCAGAGAAACGATATTGCGCTTGTCCTTCATAGCGtt < 1:3907967/67‑1 (MQ=255) cATTATTCTCTTTCTCACGCACAGCGTAATTCAGAGAAACGATATTGCGCTTGTCCTTCATAGCGTTg < 1:1413346/68‑1 (MQ=255) cATTATTCTCTTTCTCACGCACAGCGTAATTCAGAGAAACGATATTGCGCTTGTCCTTCATAGCGTTg < 1:3871815/68‑1 (MQ=255) cATTATTCTCTTTCTCACGCACAGCGTAATTCAGAGAAACGATATTGCGCTTGTCCTTCATAGCGTTGaa < 1:3406748/70‑1 (MQ=255) cATTATTCTCTTTCTCACGCACAGCGTAATTCAGAGAAACGATATTGCGATTGTCCTTCATAGCGtt < 1:3416026/67‑1 (MQ=255) attattCTCTTTCTCACGCACAGCGTAATTCAGAGAAACGATATTGCGCtt > 1:300130/1‑51 (MQ=255) ttattCTCTTTCTCACGCACAGCGTAATTCAGAGAAACGATATTGCGCTTGTCCTTCATAGCGTTGAAgcg < 1:3229971/71‑1 (MQ=255) ttCTCTTTCTCACGCACAGCGTAATTCAGAGAAACGATATTGCGCTTGTCCTTCATAGCGTTGAAgcgcgc > 1:58003/1‑71 (MQ=255) ttCTCTTTCTCACGCACAGCGTAATTCAGAGAAACGATATTGCGCTTGTCCTTCATAGCGTTGAAgcgcg > 1:1430306/1‑70 (MQ=255) tctcTgaattacgctgtgcgtgagaaagagaataatgaagatgattcgacgcgtctggcgcgtttgaacg < 1:1900904‑M1/70‑66 (MQ=255) tctcTgaattacgctgtgcgtgagaaagagaataatgaagatgatgcgacgcgtctggcgcgtttgaa > 1:3429508‑M1/1‑5 (MQ=255) tctcTgaattacgctgtgcgtgagaaagagaataatgaagatgatgcgacgcgtctggcgcgtttgaa > 1:1763242‑M1/1‑5 (MQ=255) tctcTgaattacgctgtgcgtgagaaagagaataatgaagatga > 1:270098‑M1/1‑5 (MQ=255) tctcTgaattacgctgtgcgtgagaaagagaataatgaagatga > 1:3537424‑M1/1‑5 (MQ=255) ctctgaattacgctgtgcgtgagaaagagaataatgaagatga > 1:3584142‑M1/1‑4 (MQ=255) tctgaattacgctgtgcgtgagaaagagaataatgaagatgatgcgacgcgtctggcgcgtttgaacgaac > 1:424399‑M1/1‑3 (MQ=255) tctTTCTCACGCACAGCGTAATTCAGAGAAACGATATTGCGCTTGTCCTTCATAGCGTTg < 1:371617/60‑1 (MQ=255) ctTTCTCACGCACAGCGTAATTCAGAGAAACGATATTGCGCTTGTCCTTCATAGCGTTGAAGCGCGCGata > 1:1691698/1‑71 (MQ=255) tttCTCACGCACAGCGTAATTCAGAGAAACGATATTGCGCTTGTCCtt > 1:2661863/1‑48 (MQ=255) tttCTCACGCACAGCGTAATTCAGAGAAACGATATTGCGCTTGTCCtt > 1:2180287/1‑48 (MQ=255) tttCTCACGCACAGCGTAATTCAGAGAAACGATATTGCGCTTGTCCTTCATAGCg > 1:3381748/1‑55 (MQ=255) tttCTCACGCACAGCGTAATTCAGAGAAACGATATTGCGCTTGTCCTTCATAGCGTTGAAGCGCGCGa < 1:3141454/68‑1 (MQ=255) tttCTCACGCACAGCGTAATTCAGAGAAACGATATTGCGCTTGTCCTTCATAGCGTTGAAGCGCGCGa < 1:3229864/68‑1 (MQ=255) tttCTCACGCACAGCGTAATTCAGAGAAACGATATTGCGCTTGTCCTTCATAGCGTTGAAGCGCGCGa < 1:3552978/68‑1 (MQ=255) tgaattacgctgtgcgtgagaaagagaataatgaagatgatgcgacgcgtctggcgcgtttgaacgaacgc > 1:72823‑M1/1‑1 (MQ=255) tgaattacgctgtgcgtgagaaagagaataatgaagatgatgcgacgcgtctggcgcgttt < 1:764798‑M1/61‑61 (MQ=255) | GTTTACCTTCGCGTTTAAAGCGTTCGTTCAAACGCGCCAGACGCGTCGCATCATCTTCATTATTCTCTTTCTCACGCACAGCGTAATTCAGAGAAACGATATTGCGCTTGTCCTTCATAGCGTTGAAGCGCGCGATAT > minE/1216824‑1216961 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |