| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | minE | = 1443728 | 62 (1.200) | 4 (0.090) | 3/92 | NT | 5.8% | intergenic (+16/‑1) | rcsD/rcsB | phosphotransfer intermediate protein in two‑component regulatory system with RcsBC/DNA‑binding response regulator in two‑component regulatory system with RcsC and YojN |
| ? | minE | = 1443743 | 74 (1.580) | coding (15/651 nt) | rcsB | DNA‑binding response regulator in two‑component regulatory system with RcsC and YojN | |||||
TTCCAGGAATAGAAAAATACATCAGCGACATTGACAGTTATGTCAAGAGCTTGCTGTAGCAAGGTAGCCTATTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > minE/1443654‑1443728‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑attacGTTCATATTGTTCATGTAATAGGCTACCTTGCTACAGCAAGCTCTTGACATAACTGTCAATGTCGCTGA < minE/1443743‑1443675 TTCCAGGAATAGAAAAATACATCAGCGACATTGACAGTTATGTCAAGAGCTTGCTGTAGCAAGGTAGCCTA > 1:3146015/1‑71 CCAGGAATAGAAAAATACATCAGCGACATTGACAGTTATGTCAAGAGCTTGCTGTAGCAAGGTAGCCTAT < 1:1044441/70‑1 CCAGGAATAGAAAAATACATCAGCGACATTGACAGTTATGTCAAGAGCTTGCTGTAGCAAGGTAGCCTAT < 1:1685411/70‑1 CAGGAATAGAAAAATACATCAGCGACATTGACAGTTATGTCAAGAGCTTGCTGTAGCAAGGTAGCCTATTA > 1:1034292/1‑71 GAATAGAAAAATACATCAGCGACATTGACAGTTATGTCAAGAGCTTGCTGTAGCAAGGTAGCCTA < 1:323829/65‑1 AGCGACATTGACAGTTATGTCAAGAGCTTGCTGTAGCAAGGTAGCCTATTAC > 1:1584990/1‑52 GACATTGACAGTTATGTCAAGAGCTTGCTGTAGCAAGGTAGCCTATTACGTTCATATTGTTCATGTAAT > 1:299095/1‑69 GACATTGACAGTTATGTCAAGAGCTTGCTGTAGCAAGGTAGCCTATTACGTTCATATTGTTCATGTAAT > 1:1263328/1‑69 TTGACAGTTATGTCAAGAGCTTGCTGTAGCAAGGTAGCCTATTACGTTCATATTGTTCA < 1:1581986/59‑1 GAGCTTGCTGTAGCAAGGTAGCCTATTACGTTCATATTGTTCATGT > 1:3021483/1‑46 ATTACGTTCATATTGTTCATGTAATAGGCTACCTTGCTACAGCAAGCTCTTGACATAACTGTCAATGTCGC > 1:3330570/1‑71 ATTACGTTCATATTGTTCATGTAATAGGCTACCTTGCTACAGCAAGCTCTTGACATAACTGTCAATGTCG < 1:1667139/70‑1 ATTACGTTCATATTGTTCATGTAATAGGCTACCTTGCTACAGCAAGCTCTTGACAT > 1:3245054/1‑56 ATTACGTTCATATTGTTCATGTAATAGGCTACCTTGCTACAGCAAGCTCT > 1:3309094/1‑50 TTACGTTCATATTGTTCATGTAATAGGCTACCTTGCTACAGCAAGCTCTTGACATAACTGTCAATGTCGCT > 1:1122326/1‑71 ACGTTCATATTGTTCATGTAATAGGCTACCTTGCTACAGCAAGCTCTTGACATAACTGTCAATGTCGCTGA > 1:766105/1‑71 CGTTCATATTGTTCATGTAATAGGCTACCTTGCTACAGCAAGCTCTTGACATAACTGTCAATGTCGCTGA > 1:3230602/1‑70 TTCCAGGAATAGAAAAATACATCAGCGACATTGACAGTTATGTCAAGAGCTTGCTGTAGCAAGGTAGCCTATTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > minE/1443654‑1443728‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑attacGTTCATATTGTTCATGTAATAGGCTACCTTGCTACAGCAAGCTCTTGACATAACTGTCAATGTCGCTGA < minE/1443743‑1443675 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |