| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | minE | = 1443728 | 62 (1.200) | 4 (0.090) | 3/92 | NT | 5.8% | intergenic (+16/‑1) | rcsD/rcsB | phosphotransfer intermediate protein in two‑component regulatory system with RcsBC/DNA‑binding response regulator in two‑component regulatory system with RcsC and YojN |
| ? | minE | = 1443743 | 74 (1.580) | coding (15/651 nt) | rcsB | DNA‑binding response regulator in two‑component regulatory system with RcsC and YojN | |||||
GAATAGAAAAATACATCAGCGACATTGACAGTTATGTCAAGAGCTTGCTGTAGCAAGGTAGCCTATTACATGAACAATATGAACGTAATTATTGCCGATGACCATCCGATAGTCTTGTTCGGTATTCGCAAATCACTT > minE/1443660‑1443797 | gAATAGAAAAATACATCAGCGACATTGACAGTTATGTCAAGAGCTTGCTGTAGCAAGGTAGCCTATTACAt > 1:1404810/1‑71 (MQ=255) gAAAAATACATCAGCGACATTGACAGTTATGTCAAGAGCTTGCTGTAGCAAGGTAGCCTATTACATGAAc > 1:3767663/1‑70 (MQ=255) aaaaaTACATCAGCGACATTGACAGTTATGTCAAGAGCTTGCTGTAGCAAGGTAGCCTATTACATGAACaa > 1:430305/1‑71 (MQ=255) aaaaTACATCAGCGACATTGACAGTTATGTCAAGAGCTTGCTGTAGCAAGGTAGCCTATTACATGAACaa > 1:376246/1‑70 (MQ=255) aaaaTACATCAGCGACATTGACAGTTATGTCAAGAGCTTGCTGTAGCAAGGTAGCCTATTACATGAACaa > 1:381033/1‑70 (MQ=255) aaaTACATCAGCGACATTGACAGTTATGTCAAGAGCTTGCTGTAGCAAGGTAGCCTATTACATGAACAat > 1:3050810/1‑70 (MQ=255) aTACATCAGCGACATTGACAGTTATGTCAAGAGCTTGCTGTAGCAAGGTAGCCTATTACATGAACAATATg < 1:97280/71‑1 (MQ=255) tCAGCGACATTGACAGTTATGTCAAGAGCTTGCTGTAGCAAGGTAGCCTATTACATGAACAATATGa < 1:2008070/67‑1 (MQ=255) tCAGCGACATTGACAGTTATGTCAAGAGCTTGCTGTAGCAAGGTAGCCTATTACATGAACAATATGa < 1:1459677/67‑1 (MQ=255) tCAGCGACATTGACAGTTATGTCAAGAGCTTGCTGTAGCAAGGTAGCCTATTACATGAACAATATGa < 1:3706181/67‑1 (MQ=255) tCAGCGACATTGACAGTTATGTCAAGAGCTTGCTGTAGCAAGGTAGCCTATTACATGAACAATATGAACgt > 1:766105‑M2/1‑69 (MQ=255) tCAGCGACATTGACAGTTATGTCAAGAGCTTGCTGTAGCAAGGTAGCCTATTACATGAACAATATGAACg > 1:3230602‑M2/1‑69 (MQ=255) cAGCGACATTGACAGTTATGTCAAGAGCTTGCTGTAGCAAGGTAGCCTATTACATGAACaa > 1:3569335/1‑61 (MQ=255) aGCGACATTGACAGTTATGTCAAGAGCTTGCTGTAGCAAGGTAGCCTATTACATGAACAATATGa > 1:3556992/1‑65 (MQ=255) aGCGACATTGACAGTTATGTCAAGAGCTTGCTGTAGCAAGGTAGCCTATTACATGAACAATATGAACgtaa > 1:1122326‑M2/1‑67 (MQ=255) aGCGACATTGACAGTTATGTCAAGAGCTTGCTGTAGCAAGGTAGCCTATTAC > 1:1584990‑M1/1‑52 (MQ=255) gCGACATTGACAGTTATGTCAAGAGCTTGCTGTAGCAAGGTAGCCTATTACATGAACaa < 1:925015/59‑1 (MQ=255) gCGACATTGACAGTTATGTCAAGAGCTTGCTGTAGCAAGGTAGCCTATTACATGAACAATATGAACgtaat > 1:3330570‑M2/1‑66 (MQ=255) cGACATTGACAGTTATGTCAAGAGCTTGCTGTAGCAAGGTAGCCTATTACATGAACAATATGAACgtaat < 1:1667139‑M2/70‑6 (MQ=255) gACATTGACAGTTATGTCAAGAGCTTGCTGTAGCAAGGTAGCCTATTACgttcatattgttcatgtaat > 1:299095‑M1/1‑49 (MQ=255) gACATTGACAGTTATGTCAAGAGCTTGCTGTAGCAAGGTAGCCTATTACgttcatattgttcatgtaat > 1:1263328‑M1/1‑49 (MQ=255) aCATTGACAGTTATGTCAAGAGCTTGCTGTAGCAAGGTAGCCTATTACATGAACAATATGAACGTAattat > 1:3071068/1‑71 (MQ=255) aCATTGACAGTTATGTCAAGAGCTTGCTGTAGCAAGGTAGCCTATTACATGAACAATATGAACGTAattat > 1:3641703/1‑71 (MQ=255) cATTGACAGTTATGTCAAGAGCTTGCTGTAGCAAGGTAGCCTATTACATGAACAATATGAACGTAattatt > 1:1039036/1‑71 (MQ=255) aTTGACAGTTATGTCAAGAGCTTGCTGTAGCAAGGTAGCCTATTACATGAACAATATGAACGTAATTATTg > 1:1713485/1‑71 (MQ=255) aTTGACAGTTATGTCAAGAGCTTGCTGTAGCAAGGTAGCCTATTACATGAACAATATGAACGTAATTATTg > 1:899532/1‑71 (MQ=255) ttGACAGTTTTGTCAAGAGCTTGCTGTAGCAAGGTAGCCTATTACATGAACAata < 1:1516512/55‑1 (MQ=255) ttGACAGTTATGTCAAGAGCTTGCTGTAGCAAGGTAGCCTATTACgttcatattgttca < 1:1581986‑M1/59‑15 (MQ=255) ttGACAGTTATGTCAAGAGCTTGCTGTAGCAAGGTAGCCTATTACATGAACAata < 1:3559608/55‑1 (MQ=255) ttGACAGTTATGTCAAGAGCTTGCTGTAGCAAGGTAGCCTATTACATGAACAATATGAACGTAATTATTGc < 1:1710618/71‑1 (MQ=255) gACAGTTATGTCAAGAGCTTGCTGTAGCAAGGTAGCCTATTACATGAACAATATGAACGTAattatt < 1:1412487/67‑1 (MQ=255) aCAGTTATGTCAAGAGCTTGCTGTAGCAAGGTAGCCTATTACATGAACAATATGAACGTAATTATTGCCGa > 1:3742796/1‑71 (MQ=255) cAGTTATGTCAAGAGCTTGCTGTAGCAAGGTAGCCTATTACATGAACAATATGAACGTAATTATTGCCGAt < 1:3558042/71‑1 (MQ=255) cAGTTATGTCAAGAGCTTGCTGTAGCAAGGTAGCCTATTACATGAACAATATGAACGTAATTATTGCCGAt < 1:3207604/71‑1 (MQ=255) aGTTATGTCAAGAGCTTGCTGTAGCAAGGTAGCCTATTACATGAACAATATGAACGTAATTATTGCCGAt > 1:3510076/1‑70 (MQ=255) ttATGTCAAGAGCTTGCTGTAGCAAGGTAGCCTATTACATGAACAATATGAACGTAATTATTGCCGATGAc < 1:654457/71‑1 (MQ=255) ttATGTCAAGAGCTTGCTGTAGCAAGGTAGCCTATTACATGAACAATATGAACGTAATTATTGCCGATGAc > 1:1039360/1‑71 (MQ=255) aTGTCAAGAGCTTGCTGTAGCAAGGTAGCCTATTACATGAACAATATGAACgtaat > 1:3245054‑M2/1‑51 (MQ=255) aTGTCAAGAGCTTGCTGTAGCAAGGTAGCCTATTACATGAACAATATGAACGTAATTATTGACGATGAc > 1:3620949/1‑69 (MQ=255) tGTCAAGAGCTTGCTGTAGCAAGGTAGCCTATTACATGAACAATGTGAACGTAATTATTGCCGATGACCa < 1:1380459/70‑1 (MQ=255) cAAGAGCTTGCTGTAGCAAGGTAGCCTATTACATGAACAATATGaa > 1:1500245/1‑46 (MQ=255) aaGAGCTTGCTGTAGCAAGGTAGCCTATTACATGAACAATATGAAc > 1:902621/1‑46 (MQ=255) agagCTTGCTGTAGCAAGGTAGCCTATTACATGAACAATATGAACgtaat > 1:3309094‑M2/1‑45 (MQ=255) gagCTTGCTGTAGCAAGGTAGCCTATTACgttcatattgttcatgt > 1:3021483‑M1/1‑29 (MQ=255) gagCTTGCTGTAGCAAGGTAGCCTATTACATGAACAATATGAACGTAATTATTGCCGATGACCATCCGa > 1:2573289/1‑69 (MQ=255) gagCTTGCTGTAGCAAGGTAGCCTATTACATGAACAATATGAACGTAATTATTGCCGATGACCATCCGa > 1:3841962/1‑69 (MQ=255) gCTTGCTGTAGCAAGGTAGCCTATTACATGAACAATATGAACGTAATTATTGCCGATGACCATCCGATAGt > 1:1826560/1‑71 (MQ=255) ttGCTGTAGCAAGGTAGCCTATTACATGAACAATATGAACGTAATTATTGCCGATGACCa < 1:2502666/60‑1 (MQ=255) ttGCTGTAGCAAGGTAGCCTATTACATGAACAATATGAACGTAATTATTGCCGATGACCa < 1:2651050/60‑1 (MQ=255) cTGTAGCAAGGTAGCCTATTACATGAACAATATGAACGTAATTATTGc > 1:3029274/1‑48 (MQ=255) cTGTAGCAAGGTAGCCTATTACATGAACAATATGAACGTAATTATTGc > 1:3066770/1‑48 (MQ=255) tGTAGCAAGGTAGCCTATTACATGAACAATATGAACGTAATTATTGCCGATGACCATc < 1:1919076/58‑1 (MQ=255) tGTAGCAAGGTAGCCTATTACATGAACAATATGAACGTAATTATTGCCGATGACCATCCGATAGTCTTGtt > 1:3465167/1‑71 (MQ=255) tAGCAAGGTAGCCTATTACATGAACAATATGAACGTAATTATTg > 1:1925721/1‑44 (MQ=255) tAGCAAGGTAGCCTATTACATGAACAATATGAACGTAATTATTGCCGATGACCATCCGATAGTc > 1:1282687/1‑64 (MQ=255) tAGCAAGGTAGCCTATTACATGAACAATATGAACGTAATTATTGCCGATGACCATCCGATAGTCTTGtt < 1:3806449/69‑1 (MQ=255) tAGCAAGGTAGCCTATTACATGAACAATATGAACGTAATTATTGCCGATGACCATCCGATAGTCTTGtt < 1:2686128/69‑1 (MQ=255) gCAAGGTAGCCTATTACATGAACAATATGAACGTAATTATTGCCGATGACCATCCGATAGTCTTGTTCgg < 1:667004/70‑1 (MQ=255) gCAAGGTAGCCTATTACATGAACAATATGAACGTAATTATTGCCGATGACCATCCGATAGTCTTGTTCgg > 1:2057378/1‑70 (MQ=255) gCAAGGTAGCCTATTACATGAACAATATGAACGTAATTATTGCCGATGACCATCCGATAGTCTTGTTCgg < 1:1055058/70‑1 (MQ=255) cAAGGTAGCCTATTACATGAACAATATGAACGTAATTATTGCCGATGACCATCCGATAGTCTTGTTCGGTa < 1:1735550/71‑1 (MQ=255) aaGGTAGCCTATTACATGAACAATATGAACGTAATTATTGCCGATGACCATCCGATAGTCTTGTTCGGTAt < 1:3852288/71‑1 (MQ=255) aaGGTAGCCTATTACATGAACAATATGAACGTAATTATTGCCGATGACCATCCGATAGTCTTGTTCGGTAt > 1:3504021/1‑71 (MQ=255) aaGGTAGCCTATTACATGAACAATATGAACGTAATTATTGCCGATGACCATCCGATAGTCTTGTTCGGTAt < 1:1897530/71‑1 (MQ=255) ggTAGCCTATTACATGAACAATATGAACGTAATTATTGCCGATGACCATCCGATAGTCTTGTTCGGTATTc > 1:1884580/1‑71 (MQ=255) gTAGCCTATTACATGAACAATATGAACGTAATTATTGCCGATGACCATCCGATAGTCTTGTTCGGTATTCg < 1:1979837/71‑1 (MQ=255) tAGCCTATTACATGAACAATATGAACGTAATTATTGCCGATGACCATCCGATAGTCTTGTTCGGTATTCg > 1:3788079/1‑70 (MQ=255) gCCTATTACATGAACAATATGAACGTAATTATTGCCg < 1:1678303/37‑1 (MQ=255) gCCTATTACATGAACAATATGAACGTAATTATTGCCGATGACCAt > 1:1765523/1‑45 (MQ=255) gCCTATTACATGAACAATATGAACGTAATTATTGCCGATGACCATCCGATAGTCTTGTTCGGTATTCGCa > 1:543476/1‑70 (MQ=255) ccTATTACATGAACAATATGAACGTAATTATTGCCGATGACCATCCGATAGTCTTGTTCGGTAt < 1:3490994/64‑1 (MQ=255) ccTATTACATGAACAATATGAACGTAATTATTGCCGATGACCATCCGATAGTCTTGTTCGGTATTCGCaaa > 1:452527/1‑71 (MQ=255) cTATTACATGAACAATATGAACGTAATTATTGCCGATGACCATCCGATAGTCTTGTTCGGTATTCGCAAAt > 1:1677421/1‑71 (MQ=255) tATTACATGAACAATATGAACGTAATTATTGCCGATGACCa < 1:2461758/41‑1 (MQ=255) tATTACATGAACAATATGAACGTAATTATTGCCGATGACCATCCGATAGTCTTGTTCGGTATTCGCAAAt > 1:3109465/1‑70 (MQ=255) aTTACgttcatattgttcatgtaataggctaccttgctacagcaagctcttgacataactgtcaatgtcgc > 1:3330570‑M1/1‑5 (MQ=255) aTTACgttcatattgttcatgtaataggctaccttgctacagcaagctcttgacataactgtcaatgtcg < 1:1667139‑M1/70‑66 (MQ=255) aTTACgttcatattgttcatgtaataggctaccttgctacagcaagctcttgacat > 1:3245054‑M1/1‑5 (MQ=255) aTTACgttcatattgttcatgtaataggctaccttgctacagcaagctct > 1:3309094‑M1/1‑5 (MQ=255) aTTACATGAACAATATGAACgtaataggctaccttgctacagcaagctcttgacataactgtcaatgtc > 1:299095‑M2/1‑20 (MQ=255) aTTACATGAACAATATGAACgtaataggctaccttgctacagcaagctcttgacataactgtcaatgtc > 1:1263328‑M2/1‑20 (MQ=255) aTTACATGAACAATATGAACGTAATTATTGCCGATGACCATc > 1:148136/1‑42 (MQ=255) aTTACATGAACAATATGAACGTAATTATTGCCGATGACCATCCGATAGTCTTGTTCGGTATTc < 1:940254/63‑1 (MQ=255) aTTACATGAA‑AATATGAACGTAATTATTGCCGATGACCATc > 1:3330592/1‑41 (MQ=38) ttACgttcatattgttcatgtaataggctaccttgctacagcaagctcttgacataactgtcaatgtcgct > 1:1122326‑M1/1‑4 (MQ=255) ttACATGAACAATATGAACGTAATTATTGCCGATGACCATCCGATAGTCTTGtt < 1:1609351/54‑1 (MQ=255) ttACATGAACAATATGAACGTAATTATTGCCGATGACCATCCGATAGTCTTGTTCGGTATTCGCAAATc < 1:1161447/69‑1 (MQ=255) ttACATGAACAATATGAACGTAATTATTGCCGATGACCATCCGATAGTCTTGTTCGGTATTCGCAAATCAc < 1:94080/71‑1 (MQ=255) ttACATGAACAATATGAACGTAATTATTGCCGATGACCATCCGATAGTCTTGTTCGGTATTCGCAAATCAc < 1:838804/71‑1 (MQ=255) tACATGAACAATATGAACGTAATTATTGCCGATGACCATCCGATAGTCTTGTTCGGTATTCGCAAATCACt > 1:2224502/1‑71 (MQ=255) aCgttcatattgttcatgtaataggctaccttgctacagcaagctcttgacataactgtcaatgtcgctga > 1:766105‑M1/1‑2 (MQ=255) aCATGAACAATATGAACgtaataggctaccttgctacagcaagctc > 1:3021483‑M2/1‑17 (MQ=255) aCATGAACAATATGAACGTAATTATTGCCGATGACCATCCGATAGTCTTGTTCg > 1:550838/1‑54 (MQ=255) aCATGAACAATATGAACGTAATTATTGCCGATGACCATCCGATAGTCTTGTTCg > 1:2187424/1‑54 (MQ=255) aCATGAACAATATGAACGTAATTATTGCCGATGACCATCCGATAGTCTTGTTCGGTATTCGCAAATCACtt > 1:1199857/1‑71 (MQ=255) aCATGAACAATATGAACGTAATTATTGCCGATGACCATCCGATAGTCTTGTTCGGTATTCGCAAATCACt < 1:2022957/70‑1 (MQ=255) aCATGAACAATATGAACGTAATTATTGCCGATGACCATCCGATAGTCTTGTTCGGTATTCGCAAATCACt < 1:3313863/70‑1 (MQ=255) cgttcatattgttcatgtaataggctaccttgctacagcaagctcttgacataactgtcaatgtcgctga > 1:3230602‑M1/1‑1 (MQ=255) cATGAACAATATGAACGTAATTATTGCCGATGACCATCCGATAGTCTTGTTCGGTATTCGCAAATc < 1:1520579/66‑1 (MQ=255) cATGAACAATATGAACGTAATTATTGCCGATGACCATCCGATAGTCTTGTTCGGTATTCGCAAATCACtt < 1:2745204/70‑1 (MQ=255) | GAATAGAAAAATACATCAGCGACATTGACAGTTATGTCAAGAGCTTGCTGTAGCAAGGTAGCCTATTACATGAACAATATGAACGTAATTATTGCCGATGACCATCCGATAGTCTTGTTCGGTATTCGCAAATCACTT > minE/1443660‑1443797 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |