New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? minE = 144453728 (0.540)10 (0.380)
+AAACAAAGCGCACTTTGCTGGTCTG		 10/52 NT 46.6% intergenic (+158/+42) rcsB/rcsC DNA‑binding response regulator in two‑component regulatory system with RcsC and YojN/hybrid sensory kinase in two‑component regulatory system with RcsB and YojN
?minE 2477862 = 17 (0.330)intergenic (+17/‑166) pstA/pstB phosphate transporter subunit/phosphate transporter subunit

GGCCAGATAAGACGCGTCAGCGTCGCATCTGGCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  minE/1444503‑1444537
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTCCCCTCACCCTAACCCTCTCCCCAGAGGGGCGAGGGGACCGACCGAG  >  minE/2477862‑2477910
                                   |||||||||||||||||||||||||                                                 
GGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACC                                        >  1:1802463/1‑71
    AGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAA                                    <  1:2328096/71‑1
      ATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACC                                  >  1:3313133/1‑71
         AGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCC                                             <  1:721490/57‑1
            CGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCC                            <  1:668719/71‑1
             GCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTC                                                <  1:3266032/50‑1
               GTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCT                                >  1:1484377/1‑64
                TCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCT                                            >  1:3420250/1‑51
                  AGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCATCTCCCCGGAG                      <  1:2856639/71‑1
                      TCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCT                              <  1:3623922/59‑1
                      TCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTA                                     >  1:3590653/1‑52
                               GCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCg                         <  1:2032996/55‑2
                               GCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGA           <  1:3771594/69‑1
                               GCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCG                 <  1:809041/63‑1
                                  TAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGA                >  1:3350532/1‑61
                                   AAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGCGGG             >  1:1333525/1‑63
                                   AAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACtgt       >  1:3146473/1‑66
                                      CAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGgg  <  1:3898565/71‑3
                                   |||||||||||||||||||||||||                                                 
GGCCAGATAAGACGCGTCAGCGTCGCATCTGGCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  minE/1444503‑1444537
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTCCCCTCACCCTAACCCTCTCCCCAGAGGGGCGAGGGGACCGACCGAG  >  minE/2477862‑2477910

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.