| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | minE | = 1444537 | 28 (0.540) | 10 (0.380) +AAACAAAGCGCACTTTGCTGGTCTG |
10/52 | NT | 46.6% | intergenic (+158/+42) | rcsB/rcsC | DNA‑binding response regulator in two‑component regulatory system with RcsC and YojN/hybrid sensory kinase in two‑component regulatory system with RcsB and YojN |
| ? | minE | 2477862 = | 17 (0.330) | intergenic (+17/‑166) | pstA/pstB | phosphate transporter subunit/phosphate transporter subunit | |||||
CTGCTGAACATTCTGGCGCGCGTTGTTTTTGCGAAGAATAAACACGGTTGATATTGCTGACACGGTTTTCCCCTCACCCTAACCCTCTCCCCAGAGGGGCGAGGGGACCGACCGAGCGCCTTTTTGACTCTGTACA > minE/2477795‑2477930 | ctgctgAACATTCTGGCGCGCGTTGTTTTTGCGAAGAATAAACACGGTTGATATTGCTGACACGGTTTTc < 1:1551466/70‑1 (MQ=255) tgAACATTCTGGCGCGCGTTGTTTTTGCGAAGAATAAACACGGTTGATATTGCTGACACGGTTTTCCCCt > 1:3076594/1‑70 (MQ=255) ggccagataagacgcgtcagcgtcgcatctggcataaacaaagcgcactttgctggtctgTTCCCCTCAcc > 1:1802463‑M2/61‑71 (MQ=255) aCATTCTGGCGCGCGTTGTTTTTGCGAAGAATAAACACGGTTGATATTGCTGACACGGTTTTCCCCTCAcc < 1:1045762/71‑1 (MQ=255) aTTCTGGCGCGCGTTGTTTTTGCGAAGAATAAACACGGTTGATATTGCTGACACGGTTTTCCCCTCACCCt < 1:3942712/71‑1 (MQ=255) agataagacgcgtcagcgtcgcatctggcataaacaaagcgcactttgctggtctgTTCCCCTCACCCTaa < 1:2328096‑M2/15‑1 (MQ=255) cTGGCGCGCGTTGTTTTTGCGAAGAATAAACACGGTTGATATTGCTGACACGGTTTTCCCCTCACCCTaa < 1:205026/70‑1 (MQ=255) ataagacgcgtcagcgtcgcatctggcataaacaaagcgcactttgctggtctgTTCCCCTCACCCTAAcc > 1:3313133‑M2/55‑71 (MQ=255) gcgcgcGTTGTTTTTGCGAAGAATAAACACGGTTGATATTGCTGACACGGTTTTCCCCTCACCCTAAcc < 1:3377582/69‑1 (MQ=255) agacgcgtcagcgtcgcatctggcataaacaaagcgcactttgctggtctgTTcccc < 1:721490‑M2/6‑1 (MQ=255) cgcgtcagcgtcgcatctggcataaacaaagcgcactttgctggtctgTTCCCCTCACCCTAACCCTCTcc < 1:668719‑M2/23‑1 (MQ=255) gcgtcagcgtcgcatctggcataaacaaagcgcactttgctggtctgTTc < 1:3266032‑M2/3‑1 (MQ=255) gtcagcgtcgcatctggcataaacaaagcgcactttgctggtctgTTCCCCTCACCCTAACCct > 1:1484377‑M2/46‑64 (MQ=255) tgttTTTGCGAAGAATAAACACGGTTGATATTGCTGACACGGTTTTCCCCTCACCCTAACCCTCTccc > 1:3732429/1‑68 (MQ=255) tcagcgtcgcatctggcataaacaaagcgcactttgctggtctgTTCCCCt > 1:3420250‑M2/45‑51 (MQ=255) gttTTTGCGAAGAATTAACACGGTTGATATTGCTGACACGGTTTTcccc > 1:654441/1‑49 (MQ=255) gttTTTGCGAAGAATAAACACGGTTGATATTGCTGACACGGTTTTCCCCTCACCCTAAc > 1:385755/1‑59 (MQ=255) tttttGCGAAGAATAAACACGGTTGATATTGCTGACACGGTTTTCCCCTCACCCTAACCcact < 1:2273222/63‑1 (MQ=255) agcgtcgcatctggcataaacaaagcgcactttgctggtctgTTCCCCTCACCCTAACCATCTCCCCggag < 1:2856639‑M2/29‑1 (MQ=255) tcgcatctggcataaacaaagcgcactttgctggtctgTTCCCCTCACCCTa > 1:3590653‑M2/39‑52 (MQ=255) tcgcatctggcataaacaaagcgcactttgctggtctgTTCCCCTCACCCTAACCctct < 1:3623922‑M2/21‑1 (MQ=255) tGCGAAGAATAAACACGGTTGATATTGCTGACACGGTTTTCCCCTCACCCTAACCCTCTCCCCAGAggg > 1:2999350/1‑69 (MQ=255) cGAAGAATAAACACGGTTGATATTGCTGACACGGTTTTCCCCTCACCCTAACCCTCTCCCCAGAGGGGCg < 1:200668/70‑1 (MQ=255) gaagaaTAAACACGGTTGATATTGCTGACACGGTTTTCCCCTCACCCTAACCATCTCCCCAGAgg < 1:2244658/65‑1 (MQ=255) aagaaTAAACACGGTTGATATTGCTGACACGGTTTTCCCCTCACCCTaa < 1:658635/49‑1 (MQ=255) agaaTAAACACGGTTGATATTGCTGACACGGTTTTCCCCTCACCCTAACCCTCTCCCCAGAGGGGCGAggg < 1:1912480/71‑1 (MQ=255) gcataaacaaagcgcactttgctggtctgTTCCCCTCACCCTAACCCTCtccccg < 1:2032996‑M2/26‑2 (MQ=255) gcataaacaaagcgcactttgctggtctgTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCg < 1:809041‑M2/34‑1 (MQ=255) gcataaacaaagcgcactttgctggtctgTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGga < 1:3771594‑M2/40‑1 (MQ=255) taaacaaagcgcactttgctggtctgTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGa > 1:3350532‑M2/27‑61 (MQ=255) acacGGTTGATATTGCTGACACGGTTTTCCCCTCACCCTAACCctc < 1:1254899/46‑1 (MQ=255) aaacaaagcgcactttgctggtctgTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGCggg > 1:1333525‑M2/26‑63 (MQ=255) aaacaaagcgcactttgctggtctgTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAggggactgt > 1:3146473‑M2/26‑66 (MQ=255) caaagcgcactttgctggtctgTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGggactgtccggg < 1:3898565‑M2/49‑3 (MQ=255) gTTGATATTGCTGACACGGTTTTCCCCTCACCCTAACCCTCTCCCCagag > 1:1083685/1‑50 (MQ=255) tGATATTGCTGACACGGTTTTCCCCTCACCCTAACCCTCTCCCCAGAGGGGCGa > 1:3862328/1‑54 (MQ=255) tttCCCCTCACCCTAACCCTCTCCCCAGAGGGGCGAGGGGACCGCCCGAGCGCCGTTTTGACTCTGTaca > 1:1447284/1‑70 (MQ=255) | CTGCTGAACATTCTGGCGCGCGTTGTTTTTGCGAAGAATAAACACGGTTGATATTGCTGACACGGTTTTCCCCTCACCCTAACCCTCTCCCCAGAGGGGCGAGGGGACCGACCGAGCGCCTTTTTGACTCTGTACA > minE/2477795‑2477930 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |