| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | minE | = 1456504 | 46 (0.890) | 5 (0.110) | 3/90 | NT | 11.8% | coding (846/1650 nt) | yfaQ | hypothetical protein |
| ? | minE | = 1456521 | 34 (0.740) | coding (829/1650 nt) | yfaQ | hypothetical protein | |||||
GGTCGTCTCACCGTGGCTGACAAACGTAATGTGGTTACCATTAGTAAACGTCACACGATAGCGCCCATTAAGTACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > minE/1456429‑1456504‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agtacgACGGCAGTAAATCCCGGCGTACTTAATGGGCGCTATCGTGTGACGTTTACTAATGGTAACCACATTACGT < minE/1456521‑1456452 GGTCGTCTCACCGTGGCTGACAAACGTAATGTGGTTACCATTAGTAAACGTCACACGATAGCGCCCATTAA < 1:3777012/71‑1 GTCGTCTCACCGTGGCTGACAAACGTAATGTGGTTACCATTAGTAAACGTCACACGATAGCGCCCATTAAG < 1:879012/71‑1 GTCGTCTCACCGTGGCTGACAAACGTAATGTGGTTACCATTAGTAAACGTCACACGATAGCGCCCATTAA < 1:216234/70‑1 GTCGTCCCACCGTGGCTGACAAACGTAATGTGGTTACCATTAGTAAACGTCACACGATAGCGCCCATTAAG < 1:3476573/71‑1 ACCGTGGCTGACAAACTTAATGTGGTTACCATTAGTAAACGTCACACGATAGCGCCCATTAAGTACtcc < 1:1480809/69‑4 CCGTGGCTGACAAACTTAATGTGGTTACCATTAGTAAACGTCACACGATAGCGCCCATTAAGTACtcc < 1:1476107/68‑4 TGGCTGACAAACGTAATGTGGTTACCATTAGTAAACGTCACACGATAGCGCCCATTAAG > 1:1331261/1‑59 TGGCTGACAAACGTAATGTGGTTACCATTAGTAAACGTCACACGATAGCGCCCATTAAG > 1:3782240/1‑59 GACAAACGTAATGTGGTTACCATTAGTAAACGTCACACGATAGCGCCCATTAAG > 1:1691744/1‑54 GACAAACGTAATGTGGTTACCATTAGTAAACGTCACACGATAGCGCCCATTAAG > 1:2339694/1‑54 AAACGTAATGTGGTTACCATTAGTAAACGTCACACGATAGCGCCCATTAAGTACGACGGCAGTAAATCC < 1:2226702/69‑1 TGTGGTTACCATTAGTAAACGTCACACGATAGCGCCCATTAAGTACGACGGCAGT > 1:3295512/1‑55 TGGTTACCATTAGTAAACGTCACACGATAGCGCCCATTAAGTACGACGGCAGTAAATCCCGGCG < 1:1517164/64‑1 GTCACACGATAGCGCCCATTAAGTACGACGGCAGTAAATCC < 1:1559342/41‑1 GTCACACGATAGCGCCCATTAAGTACGACGGCAGTAAATCC < 1:1240606/41‑1 TACGACGGCAGTAAATCCCGGCGTACTTAATGGGCGCTATCGTGTGACGTTTACTAATGGTAACCACA < 1:371448/68‑1 ACGACGGCAGTAAATCCCGGCGTACTTAATGGGCGCTATCGTGTGACGTTTACTAATGGTAACCACATTAC > 1:1124264/1‑71 ACGACGGCAGTAAATCCCGGCGTACTTAATGGGCGCTATCGTGTGA > 1:3331270/1‑46 ACGACGGCAGTAAATCCCGGCGTACTTAATGGGCGCTATCGTGTGA > 1:876168/1‑46 GACGGCAGTAAATCCCGGCGTACTTAATGGGCGCTATCGTGTGACGTTTACTAATGGTAACCACATTACGT < 1:1436039/71‑1 GGTCGTCTCACCGTGGCTGACAAACGTAATGTGGTTACCATTAGTAAACGTCACACGATAGCGCCCATTAAGTACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > minE/1456429‑1456504‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agtacgACGGCAGTAAATCCCGGCGTACTTAATGGGCGCTATCGTGTGACGTTTACTAATGGTAACCACATTACGT < minE/1456521‑1456452 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |