| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | minE | = 1501264 | 66 (1.270) | 3 (0.070) | 3/90 | NT | 5.7% | intergenic (‑206/+425) | nuoA/lrhA | NADH:ubiquinone oxidoreductase, membrane subunit A/DNA‑binding transcriptional repressor |
| ? | minE | = 1501324 | 41 (0.900) | intergenic (‑266/+365) | nuoA/lrhA | NADH:ubiquinone oxidoreductase, membrane subunit A/DNA‑binding transcriptional repressor | |||||
TTTTACTCCTTTCTATAACCTTTTGTCAACTTTAACAAAAGTTTCTTCACATTAGTTTACATAATATCAACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > minE/1501193‑1501264‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcaacaACATCTAATTATCCTGGAGTCGTCAAGGATCTGGGGTGAAAGGGCATTAAATGCTAATGGTGTTGATAT < minE/1501324‑1501256 TTTTACTCCTTTCTATAACCTTTTGTCAACTTTAACAAAAGTTTCTTCACATTAGTTTACATAATATCAA < 1:1368240/70‑1TTTTACTCCTTTCTATAACCTTTTGTCAACTTTAACAAAAGTTTCTTCACATTAGTTTACATAATATCAA > 1:168366/1‑70TTTTACTCCTTTCTATAACCTTTTGTCAACTTTAACAAAAGTTTCTTCACATTAGTTTACATAATAT > 1:660019/1‑67 TAACCTTTTGTCAACTTTAACAAAAGTTTCTTCACATTAGTTTACATAATATC < 1:2984114/53‑1 CCTTTTGTCAACTTTAACAAAAGTTTCTTCACATTAGTTTACATAATATCAA > 1:1464333/1‑52 TCAACTTTAACAAAAGTTTCTTCACATTAGTTTACATAATATCA < 1:3189222/44‑1 AACTTTAACAAAAGTTTCTTCACATTAGTTTACATAATATCAA < 1:1200831/43‑1 AAAGTTTCTTCACATTAGTTTACATAATATCAACA > 1:1634516/1‑35 AAAGTTTCTTCACATTAGTTTACATAATATCAACA > 1:3678382/1‑35 AAGTTTCTTCACATTAGTTTACATAATATCAACAACATCTAATTATCCTGGAGTCGTCAAGGATCTGGGGT > 1:2331643/1‑71 GTTTCTTCACATTAGTTTACATAATATCAACAACATCTAATTATCCTGGAGTCGTCAAGGA > 1:1528682/1‑61 ATTAGTTTACATAATATCAACAACATCTAATTATCCTGGAGTCGTCA > 1:1812569/1‑47 TCAACAACATCTAATTATCCTGGAGTCGTCAAGGATCTGGGGTGAAAGG < 1:2511730/49‑1 AACAACATCTAATTATCCTGGAGTCGTCAAGGATCTGGGGTGAAAGGGCATTAAATGCTAATGGTGTTGAT < 1:2376557/71‑1 AACAACATCTAATTATCCTGGAGTCGTCAAGGATCTGGGGTGAAAGGGCATTAAATGCTAATGGTGTTGA > 1:258235/1‑70 ACAACATCTAATTATCCTGGAGTCGTCAAGGATCTGGGGTGAAAGGGCATTAAATGCTAATGGTGTTGATA < 1:981706/71‑1 CAACATCTAATTATCCTGGAGTCGTCAAGGATCTGGGGTGAAAGGGCATTAAATGCTAATGGTGTTGATAT < 1:227914/71‑1 CAACATCTAATTATCCTGGAGTCGTCAAGGATCTGGGGTGAAAGG > 1:597830/1‑45 AACATCTACTTATCCTGGAGGCGGCAAGGATCTGGGGTGAAAGGGC < 1:181138/46‑1 AACATCTAATTATCCTGGAGTCGTCAAGGATCTGGGGTGAAAGGGCATTAAATGCT > 1:2300492/1‑56 TTTTACTCCTTTCTATAACCTTTTGTCAACTTTAACAAAAGTTTCTTCACATTAGTTTACATAATATCAACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > minE/1501193‑1501264‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcaacaACATCTAATTATCCTGGAGTCGTCAAGGATCTGGGGTGAAAGGGCATTAAATGCTAATGGTGTTGATAT < minE/1501324‑1501256 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |