| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | minE | 1958332 = | 36 (0.690) | 3 (0.070) | 3/88 | NT | 7.7% | coding (262/660 nt) | rpiA | ribosephosphate isomerase, constitutive |
| ? | minE | 1958358 = | 41 (0.920) | coding (236/660 nt) | rpiA | ribosephosphate isomerase, constitutive | |||||
CCTCGGCATTCACGTTTTTGATCTCAACGAAGTCGACAGCCTTGGCATCTACGTTGATGGCGCAGATGAAATCAACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < minE/1958408‑1958332‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcaacgTAGATGCCAAGGCTGTCGACTTCGTTGAGATCAAAAACGTGAATGCCGAGGCTTTTCAGTTTTTCAGTG > minE/1958358‑1958426 CCTCGGCATTCACGTTTTTGATCTCAACGAAGTCGACAGCCTTGGCATCTACGTTGATGGCGCAGATGAAA < 1:3796678/71‑1 GGCATTCACGTTTTTGATCTCAACGAAGTCGACAGCCTTGGCATCTACGTTGATGGCGCAGATGAAATCAA > 1:1158423/1‑71 GGCATTCACGTTTTTGATCTCAACGAAGTCGACAGCCTTGGCATCTACGTTGATGGCGCAGATGAAATCAA > 1:1068754/1‑71 GGCATTCACGTTTTTGATCTCAACGAAGTCGACAGCCTTGGCATCTACGTTGATGGCGCAGATGAAATCAA > 1:3351233/1‑71 GGCATTCACGTTTTTGATCTCAACGAAGTCGACAGCCTTGGCATCTACGTTGATGGCGCAGATGAAATCAA < 1:2608095/71‑1 GGCATTCACGTTTTTGATCTCAACGAAGTCGACAGCCTTGGCATCTACGTTGATGGCGCAGATGAAATCA < 1:3449581/70‑1 GCATTCACGTTTTTGATCTCAACGAAGTCGACAGCCTTGGCATCTACGTTGATGGCGCAGATGAAATCAAC > 1:3327357/1‑71 CATTCACGTTTTTGATCTCATCGAAGTCGACAGCCTTGGCATCTACGTTGATGGCGCAGATGAAATCAACG > 1:3858902/1‑71 CATTCACGTTTTTGATCTCAACGAAGTCGACAGCCTTGGCATCTACGTTGATGGCGCAGATGAAATCAACG > 1:2629266/1‑71 CATTCACGTTTTTGATCTCAACGAAGTCGACAGCCTTGGCATCTACGTTGATGGCGCAGATGAAATCAACG > 1:2114011/1‑71 TTCACGTTTTTGATCTCAACGAAGTCGACAGCCTTGGCATCTACGTTGATGGCGCAGATGAAA < 1:1520943/63‑1 TCACGTTTTTGATCTCAACGAAGTCGACAGCCTTGGCATCTACGTTGATGGCGCAGATGAAATCA < 1:2143216/65‑1 GATCTCAACGAAGTCGACAGCCTTGGCATCTACGTTGATGGCGCAGATGAAATCAA < 1:2924935/56‑1 TCAACGAAGTCGACAGCCTTGGCATCTACGTTGATGGCGCAGATGAAATC < 1:466425/50‑1 ACGAAGTCGACAGCCTTGGCATCTACGTTGATGGCGCAGATGAAA > 1:2048937/1‑45 CAGCCTTGGCATCTACGTTGATGGCGCAGATGAAAT > 1:2886189/1‑36 AGCCTTGGCATCTACGTTGATGGCGCAGATGAAATCAACG > 1:667212/1‑40 GTTGATGGCGCAGATGAAATCAACGTAGATGCCAAGGCTGTCGACTTCGTTGAGATCAAAAA > 1:1292574/1‑62 GTTGATGGCGCAGATGAAATCAACGTAGATGCCAAGGCTGTCGACTTCGTT < 1:1511806/51‑1 GCAGATGAAATCAACGTAGATGCCAAGGCTGTCGACTTCGTTGAGATCAAAAACGGGAATGCCGAGGCTTT < 1:921781/71‑1 GAAATCAACGTAGATGCCAAGGCTGTCGACTTCGTTGAGATCAAAAACGTGAA > 1:2864618/1‑53 GAAATCAACGTAGATGCCAAGGCTGTCGACTTCGTTGAGATCAAAAACGTGAA > 1:3582254/1‑53 ATCAACGTAGATGCCAAGGCTGTCGACTTCGTTGAGATCAAAAACGTGAATGCCGAGGCTTTTCAGTTTTT < 1:2345080/71‑1 ATCAACGTAGATGCCAAGGCTGTCGACTTCGTTGAGATCAAAAACGTGAATGCCGAGGCTTTTCAGTTTTT < 1:536835/71‑1 TCAACGTAGATGCCAAGGCTGTCGACTTCGTTGAGATCAAAAACGTGAATGCCGAGGCTTTTCAGTTTTT > 1:2911388/1‑70 CAACGTAGATGCCAAGGCTGTCGACTTCGTTGAGATCAAAAACGTGAATGCCGAGGCTTTTCAGTTTTT > 1:1655462/1‑69 AACGTAGATGCCAAGGCTGTCGACTTCGTTGAGATCAAAAACGTGAATGCCGAGGCTTTTCAGTTTTTCAG > 1:138865/1‑71 AACGTAGATGCCAAGGCTGTCGACTTCGTTGAGATCAAA > 1:560088/1‑39 ACGTAGATGCCAAGGCTGTCGACTTCGTTGAGATCAAAAACGTGAATGCCGAGGCTTTTCAGTTTTTCAGT < 1:2040074/71‑1 ACGTAGATGCCAAGGCTGTCGACTTCGTTGAGATCAAAAAC > 1:3247344/1‑41 CGTAGATGCCAAGGCTGTCGACTTCGTTGAGATCAAAAACGTGAATGCCGAGGCTTTTCAGTTTTTCAGTG < 1:2692495/71‑1 CGTAGATGCCAAGGCTGTCGACTTCGTTGAGATCAAAAACGTGAATGCCGAGG < 1:385879/53‑1 CGTAGATGCCAAGGCTGTCGACTTCGTTGAGATCAAAAACGTGAATGCCGA > 1:2280158/1‑51 CCTCGGCATTCACGTTTTTGATCTCAACGAAGTCGACAGCCTTGGCATCTACGTTGATGGCGCAGATGAAATCAACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < minE/1958408‑1958332‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcaacgTAGATGCCAAGGCTGTCGACTTCGTTGAGATCAAAAACGTGAATGCCGAGGCTTTTCAGTTTTTCAGTG > minE/1958358‑1958426 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |