| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | minE | = 2327114 | 40 (0.770) | 4 (0.090) | 3/92 | NT | 9.7% | coding (185/1374 nt) | cpxA | sensory histidine kinase in two‑component regulatory system with CpxR |
| ? | minE | = 2327131 | 38 (0.810) | coding (202/1374 nt) | cpxA | sensory histidine kinase in two‑component regulatory system with CpxR | |||||
CTTCTGGATAGCGAACAGCGTCAGGGGCTGATGATTGAGCAGCATGTCGAAGCGGAGCTGGCGAACGATCCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > minE/2327041‑2327114‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgccACCACATTAAATCGTTGGGCGGATCGTTCGCCAGCTCCGCTTCGACATGCTGCTCAATCATCAGCCCCTG < minE/2327131‑2327062 CTTCTGGATAGCGAACAGCGTCAGGGGCTGATGATTGAGCAGCATGTCGAAGCGGAGCTGGCGAACGATCC > 1:3919609/1‑71CTTCTGGATAGCGAACAGCGTCAGGGGCTGATGATTGAGCAGCATGTCGAAGCGGAGCTGGCGAACGATCC < 1:3127817/71‑1 CTGGATAGCGAACAGCGTCAGGGGCTGATGATTGAGCAGCATGTCGAAGCGGAGCTGGCGAACGATCCGCC > 1:26782/1‑71 TGGATAGCTAACAGCGTCAGGGGCTGATGATTGAGCAGCATGTCGAAGCGGAGCTGGCGAACGATCCG < 1:39076/68‑1 CGAACAGCGTCAGGGGCTGATGATTGAGCAGCATGTCGAAGCGGAGCTGGCGAACGATCCGC < 1:1970456/62‑1 CGAACAGCGTCAGGGGCTGATGATTGAGCAGCATGTCGAAGCGGAGCTGGCGAACGATCCGC < 1:252014/62‑1 GAACAGCGTCAGGGGCTGATGATTGAGCAGCATGTCGAAGCGGAGCTGGCGAACGATCCG > 1:1743191/1‑60 GCGTCAGGGGCTGATGATTGAGCAGCATGTCGAAGCGGAGCTGGCGAACGATCCGCCACCACATTAAATCG > 1:2251906/1‑71 GCGTCAGGGGCTGATGATTGAGCAGCATGTCGAAGCGGAGCTGGCGAACGATCCGCCA > 1:731933/1‑58 GGGGCTGATGATTGAGCAGCATGTCGAAGCGGAGCTGGCGAACGATCC > 1:2646576/1‑48 GGGGCTGATGATTGAGCAGCATGTCGAAGCGGAGCTGGCGAACGATCC > 1:3377202/1‑48 GCTGATGATTGAGCAGCATGTCGAAGCGGAGCTGGCGAACGATCCGCCACCACATTAAATCGTTGGGCGGA < 1:980952/71‑1 CTGATGATTGAGCAGCATGTCGAAGCGGAGCTGGCGAACGATCCGCCACCACATTAAATAGTTGG < 1:3062172/65‑1 CTGATGATTGAGCAGCATGTCGAAGCGGAGCTGGCGAACGATCCGCCACCACATTAAATAGTTGG < 1:1885644/65‑1 ccCCACCACATTAAATCGTTGGGCGGATCGTTCGCCAGCTCCGCTT < 1:1401621/44‑1 CGCCACCACATTAAATCGTTGGGCGGATCGTTCGCCAGCTCCGCTTCGACATGCTGCTCAATCATCA > 1:2516515/1‑67 CGCCACCACATTAAATCGTTGGGCGGATCGTTCGCCAGCTCCGCTTCGACATGCTGCTCAATCATCA > 1:2303191/1‑67 CGCCACCACATTAAATCGTTGGGCGGATCGTTCGCCAGCTCCGCTT < 1:2671891/46‑1 CACCACATTAAATCGTTGGGCGGATCGTTCGCCAGCTCCGCTTCGACATGCTGCTCAATCATCAGCCCCTG < 1:210879/71‑1 CTTCTGGATAGCGAACAGCGTCAGGGGCTGATGATTGAGCAGCATGTCGAAGCGGAGCTGGCGAACGATCCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > minE/2327041‑2327114‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgccACCACATTAAATCGTTGGGCGGATCGTTCGCCAGCTCCGCTTCGACATGCTGCTCAATCATCAGCCCCTG < minE/2327131‑2327062 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |