| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | minE | = 2327114 | 40 (0.770) | 4 (0.090) | 3/92 | NT | 9.7% | coding (185/1374 nt) | cpxA | sensory histidine kinase in two‑component regulatory system with CpxR |
| ? | minE | = 2327131 | 38 (0.810) | coding (202/1374 nt) | cpxA | sensory histidine kinase in two‑component regulatory system with CpxR | |||||
CTGGATAGCGAACAGCGTCAGGGGCTGATGATTGAGCAGCATGTCGAAGCGGAGCTGGCGAACGATCCGCCCAACGATTTAATGTGGTGGCGGCGTCTGTTCCGGGCGATTGATAAGTGGGCACCGCCAGGACAGCGTTTG > minE/2327044‑2327184 | cTGGATAGCGAACAGCGTCAGGGGCTGATGATTGAGCAGCATGTCGAAGCGGAGCTGGCGAACGATCCGCC > 1:26782‑M1/1‑71 (MQ=255) tAGCGAACAGCGTCAGGGGCTGATGATTGAGCAGCATGTCGAAGCGGAGCTGGCGAACGATCCGCCCa < 1:3713600/68‑1 (MQ=255) tAGCGAACAGCGTCAGGGGCTGATGATTGAGCAGCATGTCGAAGCGGAGCTGGCGAACGATCCGCCCa < 1:3215300/68‑1 (MQ=255) tAGCGAACAGCGTCAGGGGCTGATGATTGAGCAGCATGTCGAAGCGGAGCTGGCGAACGATCCGCCCa < 1:2704629/68‑1 (MQ=255) tAGCGAACAGCGTCAGGGGCTGATGATTGAGCAGCATGTCGAAGCGGAGCTGGCGAACGATCCGCCCa < 1:3709020/68‑1 (MQ=255) tAGCGAACAGCGTCAGGGGCTGATGATTGAGCAGCATGTCGAAGCGGAGCTGGCGAACGATCCGCCCAAc > 1:2022084/1‑70 (MQ=255) aaCAGCGTCAGGGGCTGATGATTGAGCAGCATGTCGAAGCGGAGCTGGCGAACGATCCGCCCAACGAttt > 1:1172298/1‑70 (MQ=255) aCAGCGTCAGGGGCTGATGATTGAGCAGCATGTCGAAGCGGAGCTGGCGAACGATCCGCCCAACGa > 1:2952662/1‑66 (MQ=255) aCAGCGTCAGAGGCTGATGATTGAGCAGCATGTCGAAGCGGAGCTGGCGAACGATCCGCCCAACGATTTaa > 1:1377793/1‑71 (MQ=255) gCGTCAGGGGCTGATGATTGAGCAGCATGTCGAAGCGGAGCTGGCGAACGATCCGCCaccacattaaatcg > 1:2251906‑M1/1‑57 (MQ=255) gCGTCAGGGGCTGATGATTGAGCAGCATGTCGAAGCGGAGCTGGCGAACGATCCGCCa > 1:731933‑M1/1‑57 (MQ=255) ctgTCAGTGGCTGATGATTGAGCAGCATGTCGAAGCGGAGCTGGCGAACGATCCGCCCAACGATTTAAtg < 1:3814323/68‑1 (MQ=255) tCAGGGGCTGATGATTGAGCAGCATGTCGAAGCGGAGCTTGCGAACGATCCGCCCAACGATTTAATgtggt < 1:292493/71‑1 (MQ=255) tCAGGGGCTGATGATTGAGCAGCATGTCGAAGCGGAGCTGGCGAACGATCCGCCCAACGATTTAAtg < 1:811311/67‑1 (MQ=255) tCAGGGGCTGATGATTGAGCAGCATGTCGAAGCGGAGCTGGCGAACGATCCGCCCAACGATTTAATgtggt > 1:2105984/1‑71 (MQ=255) cAGGGGCTGATGATTGAGCAGCATGTCGAAGCGGAGCTGGCGAACGATCCGCCCAACGATTTAATGTGGTg < 1:210879‑M2/71‑2 (MQ=255) gCTGATGATTGAGCAGCATGTCGAAGCGGAGCTGGCGAACGATCCGCCaccacattaaatcgttgggcgga < 1:980952‑M1/71‑24 (MQ=255) cTGATGATTGAGCAGCATGTCGAAGCGGAGCTGGCGAACGATCCGCCaccacattaaatagttgg < 1:1885644‑M1/65‑19 (MQ=255) cTGATGATTGAGCAGCATGTCGAAGCGGAGCTGGCGAACGATCCGCCaccacattaaatagttgg < 1:3062172‑M1/65‑19 (MQ=255) cTGATGATTGAGCAGCATGTCGAAGCGGAGCTGGCGAACGATCCGCCCAACGATTTAAtgt > 1:2170575/1‑61 (MQ=255) cTGATGATTGAGCAGCATGTCGAAGCGGAGCTGGCGAACGATCCGCCCAACGATTTAATgtgg < 1:3224583/63‑1 (MQ=255) tgatgaTTGAGCAGCATGTCGAAGCGGAGCTGGCGAACGATCCGCCCAACGATTTAATGTGGTggcg > 1:2303191‑M2/1‑63 (MQ=255) tgatgaTTGAGCAGCATGTCGAAGCGGAGCTGGCGAACGATCCGCCCAACGATTTAATGTGGTggcg > 1:2516515‑M2/1‑63 (MQ=255) atgatTGAGCAGCATGTCGAAGCGGAGCTGGCGAACGATCCGCCCAAc > 1:2587667/1‑48 (MQ=255) atgatTGAGCAGCATGTCGAAGCGGAGCTGGCGAACGATCCGCCCAACGATTTAATGTGGTGGCGGCGt < 1:2958115/69‑1 (MQ=255) tGAGCAGCATGTCGAAGCGGAGCTGGCGAACGATCCGCCCAACGATTTAATgtgg > 1:3624976/1‑55 (MQ=255) cagcaTGTCGAAGCGGAGCTGGCGAACGATCCGCCCAACGATTTAATGTGGTGGCGGCGTCTGTTCCGGGc < 1:234938/71‑1 (MQ=255) agcaTGTCGAAGCGGAGCTGGCGAACGATCCGCCCAACGATTTAATGTGGTGGCGGCGTCTGTTCCGGGc > 1:690800/1‑70 (MQ=255) agcaTGTCGAAGCGGAGCTGGCGAACGATCCGCCCAACGATTTAATGTGGTGGCGGCGTCTGTTCCGGGCg < 1:3581743/71‑1 (MQ=255) gcaTGTCGAAGCGGAGCTGGCGAACGATCCGCCCAACGa > 1:2549438/1‑39 (MQ=255) gcaTGTCGAAGCGGAGCTGGCGAACGATCCGCCCAACGAttt < 1:734141/42‑1 (MQ=255) tGTCGAAGCGGAGCTGGCGAACGATCCGCCCAACGATTTAATGTGGTGGCGGCGTCTGTTCCGGGCGAtt > 1:757565/1‑70 (MQ=255) tGTCGAAGCGGAGCTGGCGAACGATCCGCCCAACGATTTAACGTGGTGGCGGCGTCTGTTCCGGGCGAtt > 1:872053/1‑70 (MQ=255) gTCGAAGCGGAGCTGGCGAACGATCCGCCCAACGATTTAATGTGGTGGCGGCGTCTGTTcc < 1:3469678/61‑1 (MQ=255) gTCGAAGCGGAGCTGGCGAACGATCCGCCCAACGATTTAATGTGGTGGCGGCGTCTGTTCCGGGCGATTGa > 1:1862314/1‑71 (MQ=255) tCGAAGCGGAGCTGGCGAACGATCCGCCCAACGATTTAATGTGGTGGCGGCGTCTGTTCCGGGCGATTGAt < 1:1122177/71‑1 (MQ=255) tCGAAGCGGAGCTGGCGAACGATCCGCCCAACGATTTAATGTGGTGGCGGCGTCTGTTCCGGGCGATTGAt < 1:791078/71‑1 (MQ=255) gAAGCGGAGCTGGCGAACGATCCGCCCAACGATTTAAt > 1:2876793/1‑38 (MQ=255) aaGCGGAGCTGGCGAACGATCCGCCCAACGATTTAATGTGGTgggg < 1:1401621‑M2/46‑5 (MQ=255) aaGCGGAGCTGGCGAACGATCCGCCCAACGATTTAATGTGGTggcg < 1:2671891‑M2/46‑5 (MQ=255) aaGCGGAGCTGGCGAACGATCCGCCCAACGATTTAATGTGGTGGCGGCGTCTGTTCCGGGCGATTGATAAg < 1:2759039/71‑1 (MQ=255) aGCGGAGCTGGCGAACGATCCGCCCAACGATTTAATGTGGTGGCGGCGTCTGTTCCGGGCGATTGATAAGt < 1:2762831/71‑1 (MQ=255) gCGGAGCTGGCGAACGATCCGCCCAACGATTTAATgtgg < 1:3257191/39‑1 (MQ=255) gCGGAGCTGGCGAACGATCCGCCCAACGATTTAATGTGGTGGCGGCGTCTGTTCCGGGCGATTGATAAGTg > 1:645815/1‑71 (MQ=255) cGGAGCTGGCGAACGATCCGCCCAACGATTTAATGTGGTGGCGGCGTCTGTTCCGGGCGATTGATAAGTgg > 1:1003417/1‑71 (MQ=255) ggAGCTGGCGAACGATCCGCCCAACGATTTAATGTGGTGGCGGCGTCTGTTCCggg > 1:3162948/1‑56 (MQ=255) ggAGCTGGCGAACGATCCGCCCAACGATTTAATGTGGTGGCGGCGTCTGTTCCGGGCGATTGATAAGTggg < 1:1599061/71‑1 (MQ=255) gCTGGCGAACGATCCGCCCAACGATTTAATGTGGTGGCGGCGTCTGTTCCGGGCGATTGATAAGTGGGCAc > 1:816741/1‑71 (MQ=255) cTGGCGAACGATCCGCCCAACGATTTAATGTGGTGGCGGCGTCTGTTCCGGGCGATTGATAAGTGGGCAcc < 1:2074712/71‑1 (MQ=255) ggCGAACGATCCGCCCAACGATTTAATGTGGTGGCGGCGTCTGTTCCGGGCGATTGATAAGTGGGCACCGc > 1:3940770/1‑71 (MQ=255) gCGAACGATCCGCCCAACGATTTAATGTGGTGGCGGCGTCTGTTCCGGGCGATTGATAAGTGGGCACCGcc < 1:1969440/71‑1 (MQ=255) gAACGATCCGCCCAACGATTTAATGTGGTGGCGGCGTCTATTCCGGGCGATTGATAAGTGGGCACCGCCAg < 1:77914/71‑1 (MQ=255) aCGATCCGCCCAACGATTTAATGTGGTGGCGGCGTCTGTTCCGGGCGATTGATAAGTGGGCACCGCCAGGa > 1:1196953/1‑71 (MQ=255) cGATCCGCCCAACGATTTAATGTGGTGGCGGCGTCTGTTCCGGGCGATTGATAAGt > 1:1478014/1‑56 (MQ=255) cGATCCGCCCAACGATTTAATGTGGTGGCGGCGTCTGTTCCGGGCGATTGATAAGTGGGCACCGCCAGGa > 1:3573535/1‑70 (MQ=255) cGATCCGCCCAACGATTTAATGTGGTGGCGGCGTCTGTTCCGGGCGATTGATAAGTGGGCACCGCCAGGa > 1:1779288/1‑70 (MQ=255) tCCGCCCAACGATTTAATGTGGTggcggatcgttcgccagctccgcttcgacatgctgctcaatcatcagc < 1:980952‑M2/71‑49 (MQ=255) tCCGCCCAACGATTTAATGTGGTGGCGGCGTCTGTTCCGGGCGATTGATAAGTGGGCa < 1:934674/58‑1 (MQ=255) ccccaccacattaaatcgttgggcggatcgttcgccagctccgctt < 1:1401621‑M1/44‑43 (MQ=255) cGCCaccacattaaatcgttgggcggatcgttcgccagctccgcttcgacatgctgctcaatcatca > 1:2516515‑M1/1‑4 (MQ=255) cGCCaccacattaaatcgttgggcggatcgttcgccagctccgcttcgacatgctgctcaatcatca > 1:2303191‑M1/1‑4 (MQ=255) cGCCaccacattaaatcgttgggcggatcgttcgccagctccgctt < 1:2671891‑M1/46‑43 (MQ=255) cGCCCAACGATTTAATGTGGTGGCGGCGTCTGTTCCGGGCGATTGATAAGTGGGCACCGCCAGGACAGCg < 1:3817835/70‑1 (MQ=255) cGCCCAACGATTTAATGTGGTGGCGGCGTCTGTTCCGGGCGATTGATAAGTGGGCACCGCCAGGACAGCGt < 1:943228/71‑1 (MQ=255) ccAACTATTTAATGTGGTggcggatcgttcgccagctccgcttcgacatgctgctcaatcatcag < 1:1885644‑M2/65‑48 (MQ=255) ccAACTATTTAATGTGGTggcggatcgttcgccagctccgcttcgacatgctgctcaatcatcag < 1:3062172‑M2/65‑48 (MQ=255) caccacattaaatcgttgggcggatcgttcgccagctccgcttcgacatgctgctcaatcatcagcccctg < 1:210879‑M1/71‑71 (MQ=255) | CTGGATAGCGAACAGCGTCAGGGGCTGATGATTGAGCAGCATGTCGAAGCGGAGCTGGCGAACGATCCGCCCAACGATTTAATGTGGTGGCGGCGTCTGTTCCGGGCGATTGATAAGTGGGCACCGCCAGGACAGCGTTTG > minE/2327044‑2327184 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |