New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | minE | 2540259 = | 55 (1.060) | 16 (0.350) +GGTGTT |
9/90 | NT | 31.7% | coding (784/1017 nt) | rfaJ | UDP‑D‑glucose:(galactosyl)lipopolysaccharide glucosyltransferase |
? | minE | 2791155 = | 23 (0.440) | intergenic (+550/‑225) | pgi/ubiC | glucosephosphate isomerase/chorismate pyruvate lyase |
GTATAATGAATAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < minE/2540272‑2540259 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAAGTAAAGGAAAACATCACCGTTCCTGGCATCCTGGACGGTGATGCCCCTACGGTTGCCCTCGCCAGC > minE/2791155‑2791223 |||||| GTATAATGAATAAGGGTGTTTAAGTAAAGGAAAACATCACC > 1:1872609/1‑41 TATAATGAATAAGGGTGTTTAAGTAAAGGAAAACATCACCGTTCCTGGCATCCTGGACGGTGATGCCCCTA < 1:3827864/71‑1 TATAATGAATAAGGGTGTTTAAGTAAAGGAAAACATCACCGTTCC < 1:2913676/45‑1 TATAATGAATAAGGGTGTTTAAGTAAAGGAAAACATCA < 1:1172843/38‑1 TATAATGAATAAGGGTGTTTAAGTAAAGGAAAACATCA < 1:1009563/38‑1 TAATGAATAAGGGTGTTTAAGTAAAGGAAAACATCACCGTTCCTGGCATCCTGGACGGTGATGCCCCTACG > 1:2969769/1‑71 TAATGAATAAGGGTGTTTAAGTAAAGGAAAACATCACCGTTCCT > 1:461930/1‑44 TAATGAATAAGGGTGTTTAAGTAAAGGAAAACATCACCGTTC > 1:457187/1‑42 ATGAATAAGGGTGTTTAAGTAAAGGAAAACATCACCGTTCC < 1:2123766/41‑1 ATGAATAAGGGTGTTTAAGTAAAGGAAAACATCACCGTTCC < 1:3618748/41‑1 TGAATAAGGGTGTTTAAGTAAAGGAAAACATCACCGTTCCTGGCATCCTGGACGGTGATGCCCCTACGGTT < 1:294935/71‑1 TGAATAAGGGTGTTTAAGTAAAGGAAAACATCACCGTTCCTGGCATCCTGGACGGTGATGCCCCTACGGTT < 1:3515015/71‑1 TGAATAAGGGTGTTTAAGTAAAGGAAAACATCACCGTTCCTGGCATCCTGGACGGT < 1:3103508/56‑1 TGAATAAGGGTGTTTAAGTAAAGGAAAACATCACCGTTCCTGGCATCCTGGACGGT < 1:3783930/56‑1 AATAAGTGTGTTTAAGTAAAGGAAAACATCACCGTTCCTGGCATCCTGGACGGTG < 1:2914614/55‑1 AATAAGGGTGTTTAAGTAAAGGAAAACATCACCGTTCCTGG < 1:3002089/41‑1 TAAGGGTGTTTAAGTAAAGGAAAACATCACCGTTCCTGGCATCCTGGACGGTG < 1:926470/53‑1 GGGTGTTTAAGTAAAGGAAAACATCACCGTTCCTGGCATCCTGGACGGTGATGCCCCTACGGTTGCCCTCG < 1:1598607/71‑1 GGGTGTTTAAGTAAAGGAAAACATCACCGTTCCTGGCATCCTGGACGGTG < 1:2524918/50‑1 GTGTTTAAGTAAAGGAAAACATCACCGTTCCTGGCATCCTGGACGGTGA > 1:3776610/1‑49 GTTTAAGTAAAGGAAAACATCACCGTTCCTGGCATCCTGGACGGTGATGCCCCTACGGTTGCCCTCGCCAG > 1:2017634/1‑71 TTTAAGTAAAGGAAAACATCACCGTTCCTGGCATCCTGGACGGTGATGCCCCTACGGTTGCCCTCGCCAGC < 1:1750771/71‑1 |||||| GTATAATGAATAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < minE/2540272‑2540259 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAAGTAAAGGAAAACATCACCGTTCCTGGCATCCTGGACGGTGATGCCCCTACGGTTGCCCTCGCCAGC > minE/2791155‑2791223 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |