New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? minE 2540259 =55 (1.060)16 (0.350)
+GGTGTT
9/90 NT 31.7% coding (784/1017 nt) rfaJ UDP‑D‑glucose:(galactosyl)lipopolysaccharide glucosyltransferase
?minE 2791155 = 23 (0.440)intergenic (+550/‑225) pgi/ubiC glucosephosphate isomerase/chorismate pyruvate lyase

GTATAATGAATAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  minE/2540272‑2540259
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAAGTAAAGGAAAACATCACCGTTCCTGGCATCCTGGACGGTGATGCCCCTACGGTTGCCCTCGCCAGC  >  minE/2791155‑2791223
              ||||||                                                                     
GTATAATGAATAAGGGTGTTTAAGTAAAGGAAAACATCACC                                                  >  1:1872609/1‑41
 TATAATGAATAAGGGTGTTTAAGTAAAGGAAAACATCACCGTTCCTGGCATCCTGGACGGTGATGCCCCTA                   <  1:3827864/71‑1
 TATAATGAATAAGGGTGTTTAAGTAAAGGAAAACATCACCGTTCC                                             <  1:2913676/45‑1
 TATAATGAATAAGGGTGTTTAAGTAAAGGAAAACATCA                                                    <  1:1172843/38‑1
 TATAATGAATAAGGGTGTTTAAGTAAAGGAAAACATCA                                                    <  1:1009563/38‑1
   TAATGAATAAGGGTGTTTAAGTAAAGGAAAACATCACCGTTCCTGGCATCCTGGACGGTGATGCCCCTACG                 >  1:2969769/1‑71
   TAATGAATAAGGGTGTTTAAGTAAAGGAAAACATCACCGTTCCT                                            >  1:461930/1‑44
   TAATGAATAAGGGTGTTTAAGTAAAGGAAAACATCACCGTTC                                              >  1:457187/1‑42
     ATGAATAAGGGTGTTTAAGTAAAGGAAAACATCACCGTTCC                                             <  1:2123766/41‑1
     ATGAATAAGGGTGTTTAAGTAAAGGAAAACATCACCGTTCC                                             <  1:3618748/41‑1
      TGAATAAGGGTGTTTAAGTAAAGGAAAACATCACCGTTCCTGGCATCCTGGACGGTGATGCCCCTACGGTT              <  1:294935/71‑1
      TGAATAAGGGTGTTTAAGTAAAGGAAAACATCACCGTTCCTGGCATCCTGGACGGTGATGCCCCTACGGTT              <  1:3515015/71‑1
      TGAATAAGGGTGTTTAAGTAAAGGAAAACATCACCGTTCCTGGCATCCTGGACGGT                             <  1:3103508/56‑1
      TGAATAAGGGTGTTTAAGTAAAGGAAAACATCACCGTTCCTGGCATCCTGGACGGT                             <  1:3783930/56‑1
        AATAAGTGTGTTTAAGTAAAGGAAAACATCACCGTTCCTGGCATCCTGGACGGTG                            <  1:2914614/55‑1
        AATAAGGGTGTTTAAGTAAAGGAAAACATCACCGTTCCTGG                                          <  1:3002089/41‑1
          TAAGGGTGTTTAAGTAAAGGAAAACATCACCGTTCCTGGCATCCTGGACGGTG                            <  1:926470/53‑1
             GGGTGTTTAAGTAAAGGAAAACATCACCGTTCCTGGCATCCTGGACGGTGATGCCCCTACGGTTGCCCTCG       <  1:1598607/71‑1
             GGGTGTTTAAGTAAAGGAAAACATCACCGTTCCTGGCATCCTGGACGGTG                            <  1:2524918/50‑1
               GTGTTTAAGTAAAGGAAAACATCACCGTTCCTGGCATCCTGGACGGTGA                           >  1:3776610/1‑49
                 GTTTAAGTAAAGGAAAACATCACCGTTCCTGGCATCCTGGACGGTGATGCCCCTACGGTTGCCCTCGCCAG   >  1:2017634/1‑71
                  TTTAAGTAAAGGAAAACATCACCGTTCCTGGCATCCTGGACGGTGATGCCCCTACGGTTGCCCTCGCCAGC  <  1:1750771/71‑1
              ||||||                                                                     
GTATAATGAATAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  minE/2540272‑2540259
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAAGTAAAGGAAAACATCACCGTTCCTGGCATCCTGGACGGTGATGCCCCTACGGTTGCCCTCGCCAGC  >  minE/2791155‑2791223

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.