| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | minE | 2540259 = | 55 (1.060) | 16 (0.350) +GGTGTT |
9/90 | NT | 31.7% | coding (784/1017 nt) | rfaJ | UDP‑D‑glucose:(galactosyl)lipopolysaccharide glucosyltransferase |
| ? | minE | 2791155 = | 23 (0.440) | intergenic (+550/‑225) | pgi/ubiC | glucosephosphate isomerase/chorismate pyruvate lyase | |||||
CAATGAAGGGAAATTGTAAGTAAAGGAAAACATCAACGTTCGCAAAAGAAAATGCCGATTTGCGGCCGCTAAGTAAAGGAAAACATCACCGTTCCTGGCATCCTGGACGGTGATGCCCCTACGGTTGCCCTCGCCAGC > minE/2791086‑2791223 | caATGAAGGGAAATTGTAAGTAAAGGAAAACATCAACGTTCGCAAAAGAAAATGCCGATTTGCGGCCGCt > 1:1796288/1‑70 (MQ=255) aaaTTGTAAGTAAAGGAAAACATCAACGTTCGCAAAAGAAAATGCCGATTTGCGGCCGCTAAGTAAAGGaa < 1:2801403/71‑1 (MQ=255) aagtaaAGGAAAACATCAACGTTCGCAAAAGAAAATGCCGATTTGCGGCCGCTAAGTAAAGGAAAACATCa > 1:2271310/1‑71 (MQ=255) aGGAAAACATCAACGTTCGCAAAAGAAAATGCCGATTTGCGGCCGCTAAGTAAAGGAAAACATCACCGTTc > 1:145399/1‑71 (MQ=255) gAAAACATCAACGTTCGCAAAAGAAAATGCCGATTTGCGGCCGCTAAGTAAAGGAAAACATCACCGTTCCt > 1:3257005/1‑71 (MQ=255) aaaCATCAACGTTCGCAAAAGAAAATGCCGATTTGCGGCCGCTAAGTAAAGGAAAACa > 1:1334523/1‑58 (MQ=255) aCATCAACGTTCGCAAAAGAAAATGCCGATTTGCGGCCGCt < 1:3792126/41‑1 (MQ=255) cATCAACGTTCGCAAAAGAAAATGCCGATTTGCGGCCGCTAAGTAAAGGAAAACATCACCGTTcc > 1:1945238/1‑65 (MQ=255) aaCGTTCGCAAAAGAAAATGCCGATTTGCGGCCGCTAAGTAAAGGAAAACATCACCGTTCCTGGCATCCTg > 1:3781018/1‑71 (MQ=255) gTTCGCAAAAGAAAATGCCGATTTGCGGCCGCTAAGTAAAGGAAAACATCACCGTTCCTGGCATCCTGGAc > 1:330022/1‑71 (MQ=255) cAAAAGAAAATGCCGATTTGCGGCCGCTAAGTAAAGGAAAACATCACCGTTCCTGGCATCCTGGACGGTg < 1:3060265/70‑1 (MQ=255) aaaGAAAATGCCGATTTGCGGCCGCTAAGTAAAGGAAAACATCACCGTTCCTGGCATCCTGGACGGTGATg > 1:3883082/1‑71 (MQ=255) aaaGAAAATGCCGATTTGCGGCCGCTAAGTAAAGGAAAACATCACCGTTCCTGGCATCCTGGACGGTGATg < 1:546529/71‑1 (MQ=255) aaGAAAATGCCGATTTGCGGCCGCTAAGTAAAGGAAAACATCACCGTTCCTGGCATCCTGGa > 1:107499/1‑62 (MQ=255) aaGAAAATGCCGATTTGCGGCCGCTAAGTAAAGGAAAACATCACCGTTCCTGGCATCCTGGACGGTGATGc < 1:2004721/71‑1 (MQ=255) aaGAAAATGCCGATTTGCGGCCGCTAAGTAAAGGAAAACATCACCGTTCCTGGCATCCTGGACGGTGATGc > 1:3913399/1‑71 (MQ=255) gtataatgaataagggtgttTAAGTAAAGGAAAACATCAcc > 1:1872609‑M2/21‑41 (MQ=255) tataatgaataagggtgttTAAGTAAAGGAAAACATCa < 1:1172843‑M2/19‑1 (MQ=255) tataatgaataagggtgttTAAGTAAAGGAAAACATCa < 1:1009563‑M2/19‑1 (MQ=255) tataatgaataagggtgttTAAGTAAAGGAAAACATCACCGTTcc < 1:2913676‑M2/26‑1 (MQ=255) tataatgaataagggtgttTAAGTAAAGGAAAACATCACCGTTCCTGGCATCCTGGACGGTGATGCCCCTa < 1:3827864‑M2/52‑1 (MQ=255) taatgaataagggtgttTAAGTAAAGGAAAACATCACCGTTc > 1:457187‑M2/18‑42 (MQ=255) taatgaataagggtgttTAAGTAAAGGAAAACATCACCGTTCCt > 1:461930‑M2/18‑44 (MQ=255) taatgaataagggtgttTAAGTAAAGGAAAACATCACCGTTCCTGGCATCCTGGACGGTGATGCCCCTACg > 1:2969769‑M2/18‑71 (MQ=255) tGCCGATTTGCGGCCGCTAAGTAAAGGAAAACATc < 1:75868/35‑1 (MQ=255) tGCCGATTTGCGGCCGCTAAGTAAAGGAAAACATCACCGTTCCTGGCATCCTGGACGGTGATGCCCCTACg < 1:3382840/71‑1 (MQ=255) gCCGATTTGCGGCCGCTAAGTAAAGGAAAACATCACCGTTCCTGGCATCCTGGACGGTGATGCCCCTACgg > 1:1166418/1‑71 (MQ=255) atgaataagggtgttTAAGTAAAGGAAAACATCACCGTTcc < 1:3618748‑M2/26‑1 (MQ=255) atgaataagggtgttTAAGTAAAGGAAAACATCACCGTTcc < 1:2123766‑M2/26‑1 (MQ=255) tgaataagggtgttTAAGTAAAGGAAAACATCACCGTTCCTGGCATCCTGGACGGt < 1:3103508‑M2/42‑1 (MQ=255) tgaataagggtgttTAAGTAAAGGAAAACATCACCGTTCCTGGCATCCTGGACGGt < 1:3783930‑M2/42‑1 (MQ=255) tgaataagggtgttTAAGTAAAGGAAAACATCACCGTTCCTGGCATCCTGGACGGTGATGCCCCTACGGtt < 1:294935‑M2/57‑1 (MQ=255) tgaataagggtgttTAAGTAAAGGAAAACATCACCGTTCCTGGCATCCTGGACGGTGATGCCCCTACGGtt < 1:3515015‑M2/57‑1 (MQ=255) cGATTTGCGGCCGCTAAGTAAAGGAAAACATCACCGTTCCTGGCATCCTGGACGGTGATGCCCCTACGGtt < 1:627191/71‑1 (MQ=255) aataagtgtgttTAAGTAAAGGAAAACATCACCGTTCCTGGCATCCTGGACGGTg < 1:2914614‑M2/43‑1 (MQ=255) aataagggtgttTAAGTAAAGGAAAACATCACCGTTCCTgg < 1:3002089‑M2/29‑1 (MQ=255) aTTTGCGGCCGCTAAGTAAAGGAAAACATCACCGTTCCTGGCATcc > 1:3387429/1‑46 (MQ=255) aTTTGCGGCCGCTAAGTAAAGGAAAACATCACCGTTCCTGGCATCCTGGACGGTGATGcccc > 1:2614836/1‑62 (MQ=255) tttGCGGCCGCTAAGTAAAGGAAAACATCACCGTTCCt > 1:2094894/1‑38 (MQ=255) taagggtgttTAAGTAAAGGAAAACATCACCGTTCCTGGCATCCTGGACGGTg < 1:926470‑M2/43‑1 (MQ=255) tGCGGCCGCTAAGTAAAGGAAAACATCACCGTTCCTGGCATCCTGGACGGTGATGCCCCTACGGTTGccc < 1:3279346/70‑1 (MQ=255) gggtgttTAAGTAAAGGAAAACATCACCGTTCCTGGCATCCTGGACGGTg < 1:2524918‑M2/43‑1 (MQ=255) gggtgttTAAGTAAAGGAAAACATCACCGTTCCTGGCATCCTGGACGGTGATGCCCCTACGGTTGCCCTCg < 1:1598607‑M2/64‑1 (MQ=255) ggCCGCTAAGTAAAGGAAAACATAACCGTTCCTGGCAt > 1:579167/1‑38 (MQ=255) gtgttTAAGTAAAGGAAAACATCACCGTTCCTGGCATCCTGGACGGTGa > 1:3776610‑M2/6‑49 (MQ=255) gCCGCTAAGTAAAGGAAAACATCACCGTTCCTGGCATCCTGGACGGTGATGCCCCTACGGTTGCCCTCGcc < 1:993663/71‑1 (MQ=255) ccGCTAAGTAAAGGAAAACATCACCGTTCCTGGCATCCTGGACGGTGATGCCCCTACGGTTGCCCTCGc > 1:2094598/1‑69 (MQ=255) gttTAAGTAAAGGAAAACATCACCGTTCCTGGCATCCTGGACGGTGATGCCCCTACGGTTGCCCTCGCCAg > 1:2017634‑M2/4‑71 (MQ=255) ttTAAGTAAAGGAAAACATCACCGTTCCTGGCATCCTGGACGGTGATGCCCCTACGGTTGCCCTCGCCAGc < 1:1750771‑M2/69‑1 (MQ=255) gCTAAGTAAAGGAAAACATCACCGTTCCTGGCATCCTGGACGGTGATGCCCCTACGGTTGCCCTCGCCAg > 1:2559194/1‑70 (MQ=255) tAAGTAAAGGAAAACATCACCGTTCCTGGCATCCTGGACGGt > 1:806636/1‑42 (MQ=255) | CAATGAAGGGAAATTGTAAGTAAAGGAAAACATCAACGTTCGCAAAAGAAAATGCCGATTTGCGGCCGCTAAGTAAAGGAAAACATCACCGTTCCTGGCATCCTGGACGGTGATGCCCCTACGGTTGCCCTCGCCAGC > minE/2791086‑2791223 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |