New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	minE	= 2543276	57 (1.100)	6 (0.130)	6/94	NT	10.9%	coding (1252/1260 nt)	rfaL	O‑antigen ligase
	?	minE	= 2543288	46 (0.960)					coding (1240/1260 nt)	rfaL	O‑antigen ligase

TAAAGAGATTAAGTTGTATAGATAAGAAGTGAGTTTTAACTCACTTCTTAAACTTGTTTATTCTTAATTAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  minE/2543205‑2543276 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taatCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAA  <  minE/2543288‑2543249                                                                                                                  TAAAGAGATTAAGTTGTATAGATAAGAAGTGAGTTTTAACTCACTTCTTAAACTTGTTTATTCTTAATTAA                                           >  1:849144/1‑71  AAAGAGATTAAGTTGTATAGATAAGAAGTGAGTTTTAACTCACTTCTTAAACTTGTTTATTCTTAATTAAT                                          <  1:3088663/71‑1   AAGAGATTAAGTTGTATAGATAAGAAGTGAGTTTTAACTCACTTCTTAAACTTGTTTATTCTTAATTAATC                                         >  1:1693854/1‑71   AAGAGATTAAGTTGTATAGATAAGAAGTGAGTTTTAACTCACTTCTTAAACTTGTTTATTCTTAATTAAT                                          <  1:733222/70‑1                GTATAGATAAGAAGTGAGTTTTAACTCACTTCTTAAACTTGTTTATTCTTAATTAA                                           >  1:725634/1‑56                 TATAGATAAGAAGTGAGTTTTAACTCACTTCTTAAACTTGTTTATTCTTAATTAATCGTAACAATACAATT                           <  1:2308954/71‑1                  ATAGATAAGAAGTGAGTTTTAACTCACTTCTTAAACTTGTTTATTCTTAATTAA                                           >  1:685488/1‑54                     GATAAGAAGTGAGTTTTAACTCACTTCTTAAACTTGTTTATTCTTAATTAATCGTAACAATACAATTAATT                       <  1:302680/71‑1                             GTGAGTTTTAACTCACTTCTTAAACTTGTTTATTCTTAATTAATCGTAACAATACAATTAAT                        >  1:3228814/1‑62                               GAGTTTTAACTCACTTCTTAAACTTGTTTATTCTTAATTAATCGTAACAATACAAT                            <  1:2184336/56‑1                                AGTTTTAACTCACTTCTTAAACTTGTTTATTCTTAATTAATCGTAACAATACAATTAA                         >  1:1693537/1‑58                                    TTAACTCACTTCTTAAACTTGTTTATTCTTAATTAATCGTAACAATACAATT                           >  1:447562/1‑52                                                                       ATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAA  >  1:2598417/1‑42                                                                                                                  TAAAGAGATTAAGTTGTATAGATAAGAAGTGAGTTTTAACTCACTTCTTAAACTTGTTTATTCTTAATTAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  minE/2543205‑2543276 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taatCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAA  <  minE/2543288‑2543249

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.