| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | minE | = 2908679 | 53 (1.020) | 4 (0.090) | 3/90 | NT | 7.1% | intergenic (‑49/‑330) | treR/mgtA | DNA‑binding transcriptional repressor/magnesium transporter |
| ? | minE | = 2908693 | 58 (1.270) | intergenic (‑63/‑316) | treR/mgtA | DNA‑binding transcriptional repressor/magnesium transporter | |||||
TGATGGTCAGCCGATTTTGCATCCTGTTGTCCTGTAACGTGTTGTTTAATTATTTGAGCCTAACGTTACCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > minE/2908609‑2908679‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttacccATTGCTGAATGCACGGGTAACGTTAGGCTCAAATAATTAAACAACACGTTACAGGACAACAGGATG < minE/2908693‑2908628 TGATGGTCAGCCGATTTTGCATCCTGTTGTCCTGTAACGTGTTGTTTAATTATTTGAGCCTAACGTTACCC > 1:3078949/1‑71 GATTTTGCATCCTGTTGTCCTGTAACGTGTTGTTTAATTATTTGAGCCTAACGTTACCCATTGCTGAATG > 1:1294349/1‑70 GATTTTGCATCCTGTTGTCCTGTAACGTGTTGTTTAATTATTTGAGCCTAACGTTACCCATTGCTGAATG > 1:2001487/1‑70 GTTTAATTATTTGAGCCTAACGTTACCCATTGCTGAATGC < 1:2556361/40‑1 TTAATTATTTGAGCCTAACGTTACCCATTGCTGAATGCAC > 1:3865185/1‑40 TTACCCATTGCTGAATGCACGGGTAACGTTAGGCTCAAATAATTAAACAACACGTTACAGGACAACAGGAT > 1:3211330/1‑71 TACCCATTGCTGAATGCACGGGTAACGTTAGGCTCAAATAATTAAACAACACGTTACAGGACAACAGGATG > 1:2262357/1‑71 TACCCATTGCTGAATGCACGGGTAACGTTAGGCTCAAATAATTAAACAACACGTTACAGGACAACAGGATG > 1:2817515/1‑71 TACCCATTGCTGAATGCACGGGTAACGTTAGGCTCAAATAATTAAACAACACGTTACAGGACAACAGGATG > 1:948581/1‑71 TACCCATTGCTGAATGCACGGGTAACGTTAGGCTAAAATAATTAAACAACACGTTACAGGACAA > 1:2719212/1‑64 CCATTGCTGAATGCACGGGTAACGTTAGGCTCAAATAATTAAACAACACGTTA < 1:1005284/53‑1 CCATTGCTGAATGCACGGGTAACGTTAGGCTCAAATAATTA > 1:1516266/1‑41 CCATTGCTGAATGCACGGGTAACGTTAGGCTCAAATAATTA > 1:3899066/1‑41 TGATGGTCAGCCGATTTTGCATCCTGTTGTCCTGTAACGTGTTGTTTAATTATTTGAGCCTAACGTTACCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > minE/2908609‑2908679‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttacccATTGCTGAATGCACGGGTAACGTTAGGCTCAAATAATTAAACAACACGTTACAGGACAACAGGATG < minE/2908693‑2908628 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |