| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | minE | 222160 = | 61 (1.180) | 5 (0.110) | 3/92 | NT | 8.5% | intergenic (‑33/‑207) | fadE/lpcA | acyl coenzyme A dehydrogenase/D‑sedoheptulose 7‑phosphate isomerase |
| ? | minE | 222187 = | 52 (1.110) | intergenic (‑60/‑180) | fadE/lpcA | acyl coenzyme A dehydrogenase/D‑sedoheptulose 7‑phosphate isomerase | |||||
AGCAGGACAACCGTAGCGAGAATACTCAAAATCATCATAACGAAAAGCCCCTTACTTGTAGGAGGTCTGACCACTTGTGATGATATGGTTGTAGTGGATGTAAAAACATTTAGCAATATGTTTACAATATAATTACAACAA > minE/222090‑222230 | aGCAGGACAACCGTAGCGAGAATACTCAAAATCATCATAACGAAAAGCCCCTTACTTGTAGGAGGTCTGAc < 1:1152434/71‑1 (MQ=255)aGCAGGACAACCGTAGCGAGAATACTCAAAATCATCATAACGAAAAGCCCCTTACTTGTAGGAGGTCTGAc > 1:2215631/1‑71 (MQ=255) gCAGGACAACCGTAGCGAGAATACTCAAAATCATCATAACGAAAAGCCCCTTACTTGTAGGAGGTCTGAcc < 1:3603317/71‑1 (MQ=255) cAGGACAACCGTAGCGAGAATACTCAAAATCATCATAACGAAAAGCCCCTTACTTGTAGGAGGTCTGACCa > 1:2107044/1‑71 (MQ=255) ataaaaacagcaacaatgtgagctttgttgtaattatattgtaaacatattgctaaatgtttttacatCCa < 1:1349088‑M1/3‑1 (MQ=255) taaaaacagcaacaatgtgagctttgttgtaattatattgtaaacatattgctaaatgtttttacatCCAc < 1:3079890‑M1/4‑1 (MQ=255) gACAACCGTAGCGAGAATACTCAAAATCATCATAACGAAAAGCCCCTTACTTGTAGGAGGTCTGACCACtt < 1:2959405/71‑1 (MQ=255) gACAACCGTAGCGAGAATACTCAAAATCATCATAACGAAAAGCCCCTTACTTGTAGGAGGTCTGACCACtt < 1:2277184/71‑1 (MQ=255) gACAACCGTAGCGAGAATACTCAAAATCATCATAACGAAAAGCCCCTTACTTGTAGGAGGTCTGACCACtt < 1:3593730/71‑1 (MQ=255) aCAACCGTAGCGAGAATACTCAAAATCATCATAACGAAAAGCCCCTTACTTGTAGGAGGTCTGACCACtt < 1:3889885/70‑1 (MQ=255) cAACCGTAGCGAGAATACTCAAAATCATCATAACGAAAAGCCCCTTACTTGTAGGAGGTCTGACCACTtgt > 1:3228647/1‑71 (MQ=255) caacaatgtgagctttgttgtaattatattgtaaacatattgctaaatgtttttacatCCa > 1:625504‑M1/59‑61 (MQ=255) tAGCGAGAATACTCAAAATCATCATAACGAAAAGCCCCTTACTTGTAGGAGGTCTGACCACTTGtgatga > 1:3066100/1‑70 (MQ=255) tAGCGAGAATACTCAAAATCATCATAACGAAAAGCCCCTTACTTGTAGGAGGTCTGACCACTTGtgatg > 1:184885/1‑69 (MQ=255) gCGAGAATACTCAAAATCATCATAACGAAAAGCCCCTTACTTGTAGGAGGTCTGACCACTTGTGATGatat < 1:3225145/71‑1 (MQ=255) gagaATACTCAAAATCATCATAACGAAAAGCCCCTTACTTGTAGGAGGTCTGACCACTTGTGATGATATgg > 1:1150946/1‑71 (MQ=255) aaTACTCAAAATCATCATAACGAAAAGCCCCTTACTTGTAGGAGGTCTGACCACTTGTGATGATATGGTTg < 1:2691570/71‑1 (MQ=255) tACTCAAAATCATCATAACGAAAAGCCCCTTACTTGTAGGAGGTCTGACCACTTGTGATGATATGGTTGTa < 1:3006439/71‑1 (MQ=255) cTCAAAATCATCATAACGAAAAGCCCCTTACTTGTAGGAGGTCTGACCACTTGTGATGATATGGTTGTAGt < 1:3133961/71‑1 (MQ=255) tCAAAATCATCATAACGAAAAGCCCCTTACTTGTAGGAGGTCTGACCACTTGtgatga < 1:3253121/58‑1 (MQ=255) tCAAAATCATCATAACGAAAAGCCCCTTACTTGTAGGAGGTCTGACCACTTGTGATGATATGGTTGTAGTg > 1:2184458/1‑71 (MQ=255) aaaaTCATCATAACGAAAAGCCCCTTACTTGTAGGAGGTCTGACCACTTGTGATGATATGGTTGTAGTgg < 1:2339621/70‑1 (MQ=255) aaaaTCATCATAACGAAAAGCCCCTTACTTGTAGGAGGTCTGACCACTTGTGATGATATGGTTGTAGTgg < 1:842315/70‑1 (MQ=255) aaaaTCATCATAACGAAAAGCCCCTTACTTGTAGGAGGTCTGACCACTTGTGATGATATGGTTGTAGTGGa > 1:339920/1‑71 (MQ=255) aaTCATCATAACGAAAAGCCCCTTACTTGTAGGAGGTCTGACCACTTGTGATGATATGGTTGTAg > 1:1862980/1‑65 (MQ=255) aaTCATCATAACGAAAAGCCCCTTACTTGTAGGAGGTCTGACCACTTGTGATGATATGGTTGTAGAGGATg > 1:2626388/1‑71 (MQ=255) atAACGAAAAGCCCCTTACTTGTAGGAGGTCTGACCACTTGtgat < 1:3769582/45‑1 (MQ=255) aCGAAAAGCCCCTTACTTGTAGGAGGTCTGACCACTTGTGATGATATGGTTGTAGTGGATGTAAAAACAtt < 1:1965989/71‑1 (MQ=255) aCGAAAAGCCCCTTACTTGTAGGAGGTCTGACCACTTGTGATGATATGGTTGTAGTGGATGTAAAAACAtt > 1:2057949/1‑71 (MQ=255) aCGAAAAGCCCCTTACTTGTAGGAGGTCTGACCACTTGTGATGATATGGTTGTAGTGGATGTAAAAACAtt > 1:16555/1‑71 (MQ=255) aCGAAAAGCCCCTTACTTGTAGGAGGTCTGACCACTTGTGATGATATGGTTGTAGTGGATGTAAAAACAtt > 1:11879/1‑71 (MQ=255) cGAAAAGCCCCTTACTTGTAGGAGGTCTGACCACTTGTGATGATATGGTTGTa > 1:2213612/1‑53 (MQ=255) cGAAAAGCCCCTTACTTGTAGGAGGTCTGACCACTTGTGATGATATGGTTGTa > 1:1926127/1‑53 (MQ=255) cGAAAAGCCCCTTACTTGTAGGAGGTCTGACCACTTGTGATGATATGGTTGTa > 1:466145/1‑53 (MQ=255) cGAAAAGCCCCTTACTTGTAGGAGGTCTGACCACTTGTGATGATATGGTTGTAGTg < 1:2550737/56‑1 (MQ=255) gAAAAGCCCCTTACTTGTAGGAGGTCTGACCACTTGTGATGATATGGTTGTAGTGGATGTAAAAACATTTa < 1:892254/71‑1 (MQ=255) aaaaGCCCCTTACTTGTAGGAGGTCTGACCACTTGTGATGATATGGTTGTAGTGGATGTAAAAACATTTAg < 1:83277/71‑1 (MQ=255) taaacatattgctaaatgtttttacatCCACTTGTGATGATATGGTTGTAGTgg > 1:2754323‑M1/28‑54 (MQ=255) taaacatattgctaaatgtttttacatCCACTTGTGATGATATGGTTGTAGTgg > 1:2225417‑M1/28‑54 (MQ=255) aaaGCCCCTTACTTGTAGGAGGTCTGACCACTTGTGATGATATGGTTGTAGTGGATGTAAAAACATTTAg > 1:1877756/1‑70 (MQ=255) aaGCCCCTTACTTGTAGGAGGTCTGACCACTTGtga > 1:3144910/1‑36 (MQ=255) aaGCCCCTTACTTGTAGGAGGTCTGACCACTTGTGATGATATGGTTGTAGTGGATGTAAAAACATTTAGc > 1:3837840/1‑70 (MQ=255) aaGCCCCTTACTTGTAGGAGGTCTGACCACTTGTGATGATATGGTTGTAGTGGATGTAAAAACATTTAGc > 1:635191/1‑70 (MQ=255) aGCCCCTTACTTGTAGGAGGTCTGACCACTTGTGATGATATGGTTGTAGTGGATGTAAAAACATTTAGCaa > 1:540844/1‑71 (MQ=255) gCCCCTTACTTGTAGGAGGTCTGACCACTTGTGATGATATGGTTGTAGTGGATGTAAAAACATTTAGCaa > 1:2881293/1‑70 (MQ=255) aacatattctaaatgtttttacatCCACTTGTGATGATATGGTTGTAGTGGAt < 1:2847476‑M1/29‑1 (MQ=255) ccccTTACTTGTAGGAGGTCTGACCACTTGTGATGatat < 1:1484029/39‑1 (MQ=255) ccccTTACTTGTAGGAGGTCTGACCACTTGTGATGATATGGTTGTAGTGGATGTAAAAACa < 1:277644/61‑1 (MQ=255) ccccTTACTTGTAGGAGGTCTGACCACTTGTGATGATATGGTTGTAGTGGATGTAAAAACa < 1:1558536/61‑1 (MQ=255) ccTTACTTGTAGGAGGTCTGACCACTTGTGATGATATGGTTGTAGTGGATGTAAAAACATTTAGCAATATg > 1:285431/1‑71 (MQ=255) cgtACTTGTAGGAGGTCTGACCACTTGTGATGATATGGTTGTAGTGGATGTAAAAACATTTAGCAATATGt > 1:2114398/3‑71 (MQ=255) cTTACTTGTAGGAGGTCTGACCACTTGTGATGATATGGTTGTAGTGGATGTAAAAACATTTAGCAATATGt < 1:1313131/71‑1 (MQ=255) ttACTTGTAGGAGGTCTGACCACTTGTGATGATATGGTTGTAGTGGATGTAAAAACATTTAGCAATATGtt > 1:1309090/1‑71 (MQ=255) ttACTTGTAGGAGGTCTGACCACTTGTGATGATATGGTTGTAGTGGATGTAAAAACATTTAGCAATATGtt > 1:2389024/1‑71 (MQ=255) tACTTGTAGGAGGTCTGACCACTTGTGATGATATGGTTGTAGTGGATGTAAAAACATTTAGCAATATGtt > 1:1344202/1‑70 (MQ=255) aCTTGTAGGAGGTCTGACCACTTGTGATGATATGGTTGTAGTGGATGTAAAAACATTTAGCAATATGTTTa > 1:332153/1‑71 (MQ=255) aCTTGTAGGAGGTCTGACCACTTGTGATGATATGGTTGTAGTGGATGTAAAAACATTTAGCAATATGTTTa > 1:3356331/1‑71 (MQ=255) aCTTGTAGGAGGTCTGACCACTTGTGATGATATGGTTGTAGTGGATGTAAAAACATTTAGCAATATGTTTa > 1:403370/1‑71 (MQ=255) cTTGTAGGAGGTCTGACCACTTGTGATGATATGGTTGTAGTGGATGTAAAAACATTTa > 1:92453/1‑58 (MQ=255) tGTAGGAGGTCTGACCACTTGTGATGATATGGTTGTAGTGGATGTAAAAACATTTAGCAATATGTTTACaa > 1:1766317/1‑71 (MQ=255) gTAGGAGGTCTGACCACTTGTGATGATATGGTTGTAGTgg > 1:674039/1‑40 (MQ=255) gTAGGAGGTCTGACCACTTGTGATGATATGGTTGTAGTGGATGTaa > 1:2538299/1‑46 (MQ=255) gTAGGAGGTCTGACCACTTGTGATGATATGGTTGTAGTGGATGTaa > 1:1714306/1‑46 (MQ=255) gTAGGAGGTCTGACCACTTGTGATGATATGGTTGTAGTGGATGTAAAAACAt < 1:2500200/52‑1 (MQ=255) atgtttttacatCCACTTGTGATGATATGGTTGTAGt < 1:915489‑M1/25‑1 (MQ=255) atgtttttacatCCACTTGTGATGATATGGTTGTAGt < 1:624518‑M1/25‑1 (MQ=255) aggaggTCTGACCACTTGTGATGATATGGTTGTAGTGGATGTaa > 1:2256617/1‑44 (MQ=255) aggaggTCTGACCACTTGTGATGATATGGTTGTAGTGGATGTAAAAACATTTAGCAATATGTTTACAata > 1:841558/1‑70 (MQ=255) ggaggTCTGACCACTTGTGATGATATGGTTGTAGTGGATGTAAAAACATTTAGCAATATGTTTACAatat < 1:1506335/70‑1 (MQ=255) ggaggTCTGACCACTTGTGATGATATGGTTGTAGTGGATGTAAAAACATTTAGCAATATGTTTACAatat < 1:1422338/70‑1 (MQ=255) gaggTCTGACCACTTGTGATGATATGGTTGTAGTGGATGTAAAAACATTTAGCAATATGTTTACAATATaa < 1:3318699/71‑1 (MQ=255) aggTCTGACCACTTGTGATGATATGGTTGTAGTGGATGTAAAAACATTTAGCAATATGTTTACAATATAAt > 1:3471911/1‑71 (MQ=255) gTCTGACCACTTGTGATGATATGGTTGTAGTGGATGTAAAAACATTTAGCAATATGTTTACAATATAATTa > 1:1593082/1‑71 (MQ=255) tCTGACCACTTGTGATGATATGGTTGTAGTGGATGTAAAAACATTTAGCAATATGTTTACAATATAATTac < 1:3142909/71‑1 (MQ=255) tGACCACTTGTGATGATATGGTTGTAGTGGATGTAAAAACATATTGCTAAATGttt < 1:3393272/56‑1 (MQ=37) gACCACTTGTGATGATATGGTTGTAGTGGATGTAAAAACATTTAGCAATATGTTTACAata > 1:817760/1‑61 (MQ=255) aCCACTTGTGATGATATGGTTGTAGTGGATGTAAAAACa < 1:3369065/39‑1 (MQ=255) aCCACTTGTGATGATATGGTTGTAGTGGATGTAAAAACATTTAGCAATATGTTTACAATATAATTacaac < 1:3283165/70‑1 (MQ=255) CCACTTGTGATGATATGGTTGTAGTGGATGTAAAAACATTTAGCAATATGTTTACAATATAATTAcaacaa > 1:3825483‑M1/1‑71 (MQ=255) | AGCAGGACAACCGTAGCGAGAATACTCAAAATCATCATAACGAAAAGCCCCTTACTTGTAGGAGGTCTGACCACTTGTGATGATATGGTTGTAGTGGATGTAAAAACATTTAGCAATATGTTTACAATATAATTACAACAA > minE/222090‑222230 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |