| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | minE | = 436833 | 60 (1.160) | 149 (2.880) | 63/102 | NT | 74.3% | coding (546/546 nt) | seqA | regulatory protein for replication initiation |
| ? | minE | 1803907 = | 43 (0.830) | intergenic (+63/‑28) | ygaH/mprA | predicted inner membrane protein/DNA‑binding transcriptional regulator | |||||
Only 100 of 269 total aligned reads displayed.
TGATCGAACACATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAGGCCAACCTGCACAACAGAGTGAT > minE/436763‑436903 | cGAACACATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggc > 1:3441847‑M1/1‑67 (MQ=255) gAACACATCCTGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTACcgg < 1:1506822‑M1/69‑4 (MQ=255) gAACACATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTaa > 1:1439839/1‑66 (MQ=255) gAACACATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACg < 1:3318559/70‑1 (MQ=255) gAACACATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGt > 1:2124222/1‑71 (MQ=255) acacATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctg > 1:2397890‑M1/1‑64 (MQ=255) cacaTCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctga > 1:92854‑M1/1‑63 (MQ=255) catcatGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaat < 1:2085600‑M1/71‑11 (MQ=255) atcatGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaat > 1:967051‑M1/1‑60 (MQ=255) atcatGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggct < 1:3016023‑M1/65‑6 (MQ=255) tcatGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTaa < 1:1855564/59‑1 (MQ=255) atGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaat > 1:2001617‑M1/1‑57 (MQ=255) atGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaa < 1:3183140‑M1/70‑14 (MQ=255) tGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatg < 1:1541353‑M1/71‑16 (MQ=255) cAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgag < 1:550425‑M1/71‑18 (MQ=255) cAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgag > 1:2631867‑M1/1‑54 (MQ=255) cAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatga < 1:2785214‑M1/70‑17 (MQ=255) aGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgagg < 1:3137761‑M1/71‑19 (MQ=255) aGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgagg < 1:1826739‑M1/71‑19 (MQ=255) gTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggt < 1:3498761‑M1/71‑20 (MQ=255) tCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAgacaaaggaca < 1:3924213/71‑1 (MQ=255) gATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcat < 1:786349‑M1/71‑23 (MQ=255) gATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcat < 1:3412559‑M1/71‑23 (MQ=255) gATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggct < 1:2874551‑M1/54‑6 (MQ=255) gATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggct < 1:613347‑M1/54‑6 (MQ=255) gATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAaggctgaaattaat > 1:2200592‑M1/1‑49 (MQ=255) gATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAgacaaaggaca > 1:3004985/1‑69 (MQ=255) aTGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatg < 1:2836902‑M1/63‑16 (MQ=255) aTGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAgacaaaggacaaag < 1:1135196/71‑1 (MQ=255) cAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCaa > 1:227963/1‑71 (MQ=255) aaTTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgagg < 1:2239125‑M1/62‑19 (MQ=255) ttCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaa > 1:3202507‑M1/1‑42 (MQ=255) ttCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcataccca < 1:3949585‑M1/69‑28 (MQ=255) ttCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacacaaa > 1:2138042‑M1/1‑42 (MQ=255) tCCCGGCGGAATTGATTGAGAAGTTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATgg < 1:1934940/70‑1 (MQ=255) tCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaat > 1:70349‑M1/1‑41 (MQ=255) cccGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGc < 1:3881852/70‑1 (MQ=255) cggcggAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatgga < 1:109362‑M1/71‑34 (MQ=255) cggcggAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatgga < 1:2318183‑M1/71‑34 (MQ=255) ggcggAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACg > 1:123501/1‑41 (MQ=255) gcggAATTGATTGAGAAGGTTTGCGGAACTATCTaa < 1:3744736/36‑1 (MQ=255) cggAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaat > 1:2548287‑M1/1‑35 (MQ=255) ggAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggatagt > 1:1158681‑M1/1‑34 (MQ=255) ggAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggatagt > 1:834488‑M1/1‑34 (MQ=255) ggAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaa < 1:2641127‑M1/62‑29 (MQ=255) gAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGtt < 1:3827279/39‑1 (MQ=255) gAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGc < 1:3791220/57‑1 (MQ=255) aaTTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACaa < 1:590821/71‑1 (MQ=255) ttgattgaGAAGGTTTGCGGAACTATCTAAcggct < 1:751241‑M1/35‑6 (MQ=255) gattgaGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgtt > 1:608073‑M1/1‑28 (MQ=255) gattgaGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgtt < 1:1369560‑M1/70‑43 (MQ=255) gattgaGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatg < 1:36340‑M1/59‑32 (MQ=255) gattgaGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggt > 1:1924524‑M1/1‑28 (MQ=255) gattgaGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGt > 1:473923/1‑71 (MQ=255) gaatgagaaGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgt > 1:1748727‑M1/4‑28 (MQ=255) attgaGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaa < 1:1976110‑M1/55‑29 (MQ=255) attgaGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaa < 1:330651‑M1/55‑29 (MQ=255) attgaGAAGGTTTGCGGAACTATCTAAcggctgaaatt < 1:1025653‑M1/38‑12 (MQ=255) attgaGAAGGTTTGCGGAACTATCTAAAACGATGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTg > 1:1468330/1‑71 (MQ=255) ttgaGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaa > 1:3327744‑M1/1‑26 (MQ=255) tgaGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgtttacg > 1:2757205‑M1/1‑25 (MQ=255) tgaGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgtttac < 1:528799‑M1/70‑46 (MQ=255) tgaGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgttt > 1:1591729‑M1/1‑25 (MQ=255) gagaAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgtttacgc > 1:3526133‑M1/1‑24 (MQ=255) gagaAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgtttacg < 1:3356355‑M1/70‑47 (MQ=255) gagaAGGTTTGCGGAACTATCTAAAACGTTGCAgacaaagga > 1:2668882/1‑42 (MQ=255) gagaAGGTTTGCGGAACTAGCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCa < 1:1391187/70‑1 (MQ=255) agaAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgtttacgc < 1:3389246‑M1/70‑48 (MQ=255) gaAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgtttacgcc > 1:2451558‑M1/1‑22 (MQ=255) gaAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgtt < 1:1637930‑M1/64‑43 (MQ=255) gaAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtca > 1:689736‑M1/1‑22 (MQ=255) aaGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggatagctcgtttacgccca < 1:1012938‑M1/71‑51 (MQ=255) gTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTg < 1:658731/62‑1 (MQ=255) gTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAgg < 1:2566289/66‑1 (MQ=255) ttGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaat > 1:1566842‑M1/1‑16 (MQ=255) ttGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaat > 1:3668181‑M1/1‑16 (MQ=255) cGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgtttacgcccattgaacaa < 1:1569548‑M1/71‑59 (MQ=255) cGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAGGCCAACCTGc < 1:3376141/70‑1 (MQ=255) ggAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCca > 1:1307678/1‑48 (MQ=255) gAACTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgtttacgcccattgaacaaat < 1:2962701‑M1/71‑61 (MQ=255) aaCTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgtttacgcccatt > 1:562525‑M1/1‑10 (MQ=255) aaCTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAGGCCAACCTGCacaa < 1:3426751/71‑1 (MQ=255) aCTATCTAAAACGTTGCAGACAAAGGACAAAGCAAt > 1:2101692/1‑36 (MQ=255) cTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgttta > 1:1228342‑M1/1‑8 (MQ=255) cTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgttta > 1:321269‑M1/1‑8 (MQ=255) cTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgttta > 1:326099‑M1/1‑8 (MQ=255) cTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGTCAATCCACAATc < 1:875725/49‑1 (MQ=255) cTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATc < 1:407491/49‑1 (MQ=255) cTATCTAAAACGTTGCAGACAAAGGACAAAGCAATCGCAATCCACAATc > 1:2180827/1‑49 (MQ=255) aTCTAAcggctgaaattaatgaggtcatacccaaatggata > 1:801717‑M1/1‑6 (MQ=255) tCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAGGCCAACCTGCACAACaga < 1:1704025/70‑1 (MQ=255) cTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAGGCCAACCTGCACAACAGAGt > 1:63715/1‑71 (MQ=255) tAAcggctgaaattaatgaggtcatacccaaatggatagttcgtttacgcccattgaacaaatgct < 1:1674062‑M1/66‑64 (MQ=255) tAAcggctgaaattaatgaggtcatacccaaatggatagttcgtttacgcccattgaacaaatgct < 1:2421907‑M1/66‑64 (MQ=255) tAAcggctgaaattaatgaggtcatacccaaatggatagttcgtttacgcccattgaacaaatgct < 1:1122999‑M1/66‑64 (MQ=255) acggctgaaattaatgaggtcatacccaaatggatagttcgtttacgcccattgaacaaatgctaaaattt < 1:389434‑M1/71‑71 (MQ=255) acggctgaaattaatgaggtcatacccaaatggatagttcgtttacgcccattgaacaaatgctaaaatt < 1:1478070‑M1/70‑70 (MQ=255) acggctgaaattaatgaggtcatacccaaatggatagttcgtttacgcccattgaacaaatgctaaa < 1:2716338‑M1/67‑67 (MQ=255) acggctgaaattaatgaggtcatacccaaatggatagttcgtttacgcccattgaacaaatgctaaa < 1:2605499‑M1/67‑67 (MQ=255) aaaCGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAGGCCAACCTGCACAACAGAGtgat > 1:3220671/1‑71 (MQ=255) | TGATCGAACACATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAGGCCAACCTGCACAACAGAGTGAT > minE/436763‑436903 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |