| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | minE | 1837010 = | 67 (1.290) | 5 (0.110) | 3/90 | NT | 8.1% | coding (90/876 nt) | rpoS | RNA polymerase, sigma S (sigma 38) factor |
| ? | minE | 1837032 = | 55 (1.200) | coding (68/876 nt) | rpoS | RNA polymerase, sigma S (sigma 38) factor | |||||
GCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCGTTAACAGTGGTGAATAACCAATCTCACCAAGGTAAAGCTGAGTCGCGTCCAACACACGCTGTGTGGCTCCCTGCGAT > minE/1836941‑1837079 | tttggccgaagaggaactgttatcgcagggagccacacagcgtgtgttggacgcgactcagctttacctt > 1:975649‑M1/70‑70 (MQ=255)tttggccgaagaggaactgttatcgcagggagccacacagcgtgtgttggacgcgactcagctttacctTg > 1:2588049‑M1/70‑71 (MQ=255)tttggccgaagaggaactgttatcgcagggagccacacagcgtgtgttggacgcgactcagctttacctTg > 1:2592702‑M1/70‑71 (MQ=255)gcggcgAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCGTTAACAgtg > 1:73294/1‑71 (MQ=255) cggcgAGAGGCGACATCT‑‑ACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCGTTAACAgtggtg < 1:827694/71‑1 (MQ=255) tggccgaagaggaactgttatcgcagggagccacacagcgtgtgttggacgcgactcagctttacctTgg > 1:2931997‑M1/68‑70 (MQ=255) ggcgAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCGTTAACAgtggt < 1:152940/71‑1 (MQ=255) cgAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCGTTAACAgtg < 1:639975/67‑1 (MQ=255) ccgaagaggaactgttatcgcagggagccacacagcgtgtgttggacgcgactcagctttacctTGGt < 1:743946‑M1/4‑1 (MQ=255) agagGCGACATCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCGTTAACAGTGGTGAAt < 1:247305/71‑1 (MQ=255) gagGCGACATCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCGTTAACAGTGGTGAAt > 1:3501360/1‑70 (MQ=255) gagGCGACATCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCGTTAACAGTGGTGAATa < 1:1084393/71‑1 (MQ=255) gaagaggaactgttatcgcagggagccacacagcgtgtgttggacgcgactcagctttacctTGGTGa > 1:495124‑M1/63‑68 (MQ=255) gCGACATCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCGTTAACAGTGGTGAATAAcc < 1:1918055/71‑1 (MQ=255) cGACATCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCGTTAACAGTGGTGAATAACCa < 1:1578978/71‑1 (MQ=255) gACATCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCGTTAACAGTGGTGAATAACCaa < 1:3202046/71‑1 (MQ=255) gACATCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCGTTAACAGTGGTGAATAACCaa > 1:1327346/1‑71 (MQ=255) cATCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCGTTAACAGTGGTGAATAACCAAtc > 1:1064141/1‑71 (MQ=255) tctcCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCGTTAACAGTGGTGAATaa < 1:2305094/63‑1 (MQ=255) ccACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCGTTAACAGTGGTGAATaa > 1:827760/1‑60 (MQ=255) ccACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCGTTAACAGTGGTGAATAACCAAtct < 1:1678117/67‑1 (MQ=255) tatcgcagggagccacacagcgtgtgttggacgcgactcagctttacctTGGTGAATAACCAATCTCAc < 1:2117698‑M1/20‑1 (MQ=255) tatcgcagggagccacacagcgtgtgttggacgcgactcagctttacctTGGTGAATAACCAATCTCAc < 1:1113710‑M1/20‑1 (MQ=255) cACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCGTTAACAGTGGTGAATAACCAATCTCa < 1:1819811/68‑1 (MQ=255) cACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCGTTAACAGTGGTGAATAACCAATCTCAcc > 1:2733320/1‑70 (MQ=255) cACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCGTTAACAGTGGTGAATAACCAATCTCAcc < 1:2144401/70‑1 (MQ=255) atcgcagggagccacacagcgtgtgttggacgcgactcagctttacctTGGTGAATAACCAATCTCACCa > 1:3306053‑M1/49‑70 (MQ=255) cGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCGTTAACAGTGGTGAATAACCAATCTCACCAAg < 1:347595/71‑1 (MQ=255) cGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCGTTAACAGTGGTGAATAACCAATCTCACCAAg > 1:1638462/1‑71 (MQ=255) gTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCGTTAACAGTGGTGAATAACCAATCTCACCAAGGTaa < 1:2923782/71‑1 (MQ=255) tGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCGTTAACAGTGGTGAATAACCAATCTCACCAAGGTa > 1:1064994/1‑69 (MQ=255) gcgcGACGCGCAAAATAAACTTCTTCTTCGGCCGTTAACAGTGGTGa > 1:3050670/1‑47 (MQ=255) gcgACGCGCAAAATAAACTTCTTCTTCGGCCGTTAACAGTGGTGAATAACCAATCTCACCAAGGTAAAGCt < 1:2483438/71‑1 (MQ=255) gcgACGCGCAAAATAAACTTCTTCTTCGGCCGTTAACAGTGGTGAATAACCAATCTCACCAAGGTAAAGCt < 1:2739713/71‑1 (MQ=255) gcgACGCGCAAAATAAACTTCTTCTTCGGCCGTTAACAGTGGTGAATAACCAATCTCACCAAGGTAAAGCt < 1:2085506/71‑1 (MQ=255) cgACGCGCAAAATAAACTTCTTCTTCGGCCGTTAACAGTGGTGAATAACCAATCTCACCAAGGTAAAGCt > 1:3538326/1‑70 (MQ=255) cgACGCGCAAAATAAACTTCTTCTTCGGCCGTTAACAGTGGTGAATAACCAATCTCACCAAGGTAAAGCt > 1:3656056/1‑70 (MQ=255) gACGCGCAAAATAAACTTCTTCTTCGGCCGTTAACAgt > 1:1869872/1‑38 (MQ=255) aCGCGCAAAATAAACTTCTTCTTCGGCCGTTAACAGTGGTGAATAACCAATCTCACCAAGGTAAAGCTGAg < 1:1086401/71‑1 (MQ=255) aCGCGCAAAATAAACTTCTTCTTCGGCCGTTAACAGTGGTGAATAACCAATCTCACCAAGGTAAAGCTGAg < 1:3675236/71‑1 (MQ=255) acacagcgtgtgttggacgcgactcagctttacctTGGTGAATAACCAAtctc > 1:843732‑M1/36‑53 (MQ=255) acacagcgtgtgttggacgcgactcagctttacctTGGTGAATAACCAAtctc > 1:2122382‑M1/36‑53 (MQ=255) gcgcAAAATAAACTTCTTCTTCGGCCGTTAACAGTGGTGAATAACCAATCTCACCAAGGTAAAGCTGAGTc > 1:1995230/1‑71 (MQ=255) gcAAAATAAACTTCTTCTTCGGCCGTTAACAGTGGTGAATAACCAATCTCa > 1:3466243/1‑51 (MQ=255) cAAAATAAACTTCTTCTTCGGCCGTTAACAGTGGTGAATAACCAATCTCACCAAGGTAAAGCt > 1:3704830/1‑63 (MQ=255) aaaaTAAACTTCTTCTTCGGCCGTTAACAGTGGTGa > 1:1685116/1‑36 (MQ=255) aaaaTAAACTTCTTCTTCGGCCGTTAACAGTGGTGAATAACCAATCTCACCa < 1:2805257/52‑1 (MQ=255) aaaaTAAACTTCTTCTTCGGCCGTTAACAGTGGTGAATAACCAATCTCACCa < 1:1864056/52‑1 (MQ=255) aaaaTAAACTTCTTCTTCGGCCGTTAACAGTGGTGAATAACCAATCTCACCAAGGTa < 1:3330455/57‑1 (MQ=255) aaaTAAACTTCTTCTTCGGCCGTTAACAGTGGTGAATAACCAATATCACCAAGGTaaa > 1:1313525/1‑58 (MQ=255) aTAAACTTCTTCTTCGGCCGTTAACAGTGGTGAATAACCAAt > 1:522015/1‑42 (MQ=255) aTAAACTTCTTCTTCGGCCGTTAACAGTGGTGAATAACCAATCTCAcc > 1:3208324/1‑48 (MQ=255) aaaCTTCTTCTTCGGCCGTTAACAGTGGTGAATAACCAATCTCACCAAGGTAAAGCTGAGt > 1:1451048/1‑61 (MQ=255) aCTTCTTCTTCGGCCGTTAACAGTGGTGAATAACCAATCTCACCAAGGTAAAGCt < 1:3016387/55‑1 (MQ=255) ttcttcttcGGCCGTTAACAGTGGTGAATAACCAATCTCACCa < 1:690665/43‑1 (MQ=255) ttcttcttcGGCCGTTAACAGTGGTGAATAACCAATCTCACCAAGGTAAAGCTGAGTCGCGTCCAacaca > 1:633704/1‑70 (MQ=255) tcttcttcGGCCGTTAACAGTGGTGAATAACCAATCTCACCAAGGTAAAGCt < 1:2685824/52‑1 (MQ=255) tcttcttcGGCCGTTAACAGTGGTGAATAACCAATCTCACCAAGGTAAAGCTGAGTCGCGTCCa > 1:2419605/1‑64 (MQ=255) cttcttcGGCCGTTAACAGTGGTGAATAACCAAtc < 1:1820149/35‑1 (MQ=255) tcttcGGCCGTTAACAGTGGTGAATAACCAATCTCACCAAGGTAAAGCTGAGTCGCGTCCAACACACGCtg > 1:3918048/1‑71 (MQ=255) tcttcGGCCGTTAACAGTGGTGAATAACCAATCTCACCAAGGTAAAGCTGAGTCGCGTCCAACACACGCtg > 1:3762526/1‑71 (MQ=255) cttcGGCCGTTAACAGTGGTGAATAACCAATCTCACCAAg > 1:346947/1‑40 (MQ=255) ttcGGCCGTTAACAGTGGTGAATAACCAATCTCACCAAGGTAAAGCTGAGTCGCGTc > 1:3418883/1‑57 (MQ=255) ttcGGCCGTTAACAGTGGTGAATAACCAATCTCACCAAGGTAAAGCTGAGTCGCGTc > 1:133591/1‑57 (MQ=255) ttcGGCCGTTAACAGTGGTGAATAACCAATCTCACCAAGGTAAAGCTGAGTCGCGTCCAACACACGCtgtg > 1:3342984/1‑71 (MQ=255) cGGCCGTTAACAGTGGTGAATAACCAATCTCACCAAGGTAAAGCTGAGTCGCGTCCAACACACGCtgtgt < 1:3541670/70‑1 (MQ=255) cGGCCGTTAACAGTGGTGAATAACCAATCTCACCAAGGTAAAGCTGAGTCGCGTCCAACACACGCtgtgt < 1:1438652/70‑1 (MQ=255) cGGCCGTTAACAGTGGTGAATAACCAATCTCACCAAGGTAAAGCTGAGTCGCGTCCAACACACGCtgtgt < 1:882199/70‑1 (MQ=255) cGGCCGTTAACAGTGGTGAATAACCAATCTCACCAAGGTAAAGCTGAGTCGCGTCCAACACACGCtgtg < 1:2696111/69‑1 (MQ=255) cGGCCGTTAACAGTGGTGAATAACCAATCTCACCAAGGTAAAGCTGAGTCGCGTCCAACACACGCtgtg < 1:1234564/69‑1 (MQ=255) cGGCCGTTAACAGTGGTGAATAACCAATCTCACCAAGGTAAAGCTGAGTCGCGTCCAACACACGCtgtg < 1:3085374/69‑1 (MQ=255) ccGTTAACAGTGGTGAATAACCAATCTCACCAAGGTAAAGCTGAGTCGCGTCCaa < 1:679886/55‑1 (MQ=255) cGTTAACAGTGGTGAATAACCAATCTCACCAAGGTAAAGCTGAGTCGCGTCCAACACACGCTGTGTgg > 1:89609/1‑68 (MQ=255) cGTTAACAGTGGTGAATAACCAATCTCACCAAGGTAAAGCTGAGTCGCGTCCAACACACGCTGTGTgg > 1:138057/1‑68 (MQ=255) cGTTAACAGTGGTGAATAACCAATCTCACCAAGGTAAAGCTGAGTCGCGTCCAACACACGCTGTGTGGCTc < 1:821753/71‑1 (MQ=255) cGTTAACAGTGGTGAATAAACAATCTCACCAAGGTAAAGCTGAGTCGCGTCCAACACACGCTGTGTGGCTc > 1:175910/1‑71 (MQ=255) gTTAACAGTGGTGAATAACCAATCTCACCAAGGTAAAGCTGAGTCGCGTCCAACACACGCtgtgtg > 1:563464/1‑66 (MQ=255) gTTAACAGTGGTGAATAACCAATCTCACCAAGGTAAAGCTGAGTCGCGTCCAACACACGCTGTGTGGCTcc < 1:389263/71‑1 (MQ=255) gTTAACAGTGGTGAATAACCAATCTCACCAAGGTAAAGCTGAGTCGCGTCCAACACACGCTGTGTGGCTcc < 1:424894/71‑1 (MQ=255) ttAACAGTGGTGAATAACCAATCTCACCAAGGTAAAGCt < 1:3721958/39‑1 (MQ=255) ttAACAGTGGTGAATAACCAATCTCACCAAGGTAAAGCt < 1:3393119/39‑1 (MQ=255) ttAACAGTGGTGAATAACCAATCTCACCAAGGTAAAGCTGAGTCGCGTCCAACACACGCtg < 1:3272655/61‑1 (MQ=255) tAACAGTGGTGAATAACCAATCTCACCAAGGTAAAGCTGAGTCGCGTc > 1:490225/1‑48 (MQ=255) aaCAGTGGTGAATAACCAATCTCACCAAGGTAAAGCTGAGTCGCGTCCAACACACGCTGTGTGGCTcc > 1:1267544/1‑68 (MQ=255) aaCAGTGGTGAATAACCAATCTCACCAAGGTAAAGCTGAGTCGCGTCCAACACACGCTGTGTGGCTCCCTg > 1:3448873/1‑71 (MQ=255) aGTGGTGAATAACCAATCTCACCAAGGTAAAGCTGAGTCGCGTCCAACACACGCTGTGTGGCTCCCTGCGa > 1:2274459/1‑71 (MQ=255) aGTGGTGAATAACCAATCTCACCAAGGTAAAGCTGAGTCGCGTCCAACACACGCTGTGTGGCTCCCTGCGa > 1:2385436/1‑71 (MQ=255) gtggtgAATAACCAATCTCACCAAGGTAAAGCTGAGTCGCGTCCAACACACg > 1:924875/1‑52 (MQ=255) gtggtgAATAACCAATCTCACCAAGGTAAAGCTGAGTCGCGTCCAACACACGCTGTGTGGCt < 1:800170/62‑1 (MQ=255) gtggtgAATAACCAATCTCACCAAGGTAAAGCTGAGTCGCGTCCAACACACGCTGTGTGGCTCCCTGCGa > 1:641175/1‑70 (MQ=255) TGGTGAATAACCAATCTCACCAAGGTAAAGCTGAGt > 1:2093056‑M1/1‑36 (MQ=255) TGGTGAATAACCAATCTCACCAAGGTAAAGCTGAGTCGCGTCCAACACACGCTGTGTGGCTCCCTGCGa < 1:3938928‑M1/69‑1 (MQ=255) TGGTGAATAACCAATCTCACCAAGGTAAAGCTGAGTCGCGTCCAACACACGCTGTGTGGCTCCCTGCGAt < 1:55616‑M1/70‑1 (MQ=255) | GCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCGTTAACAGTGGTGAATAACCAATCTCACCAAGGTAAAGCTGAGTCGCGTCCAACACACGCTGTGTGGCTCCCTGCGAT > minE/1836941‑1837079 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |