| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | minE | 1837010 = | 67 (1.290) | 5 (0.110) | 3/90 | NT | 8.1% | coding (90/876 nt) | rpoS | RNA polymerase, sigma S (sigma 38) factor |
| ? | minE | 1837032 = | 55 (1.200) | coding (68/876 nt) | rpoS | RNA polymerase, sigma S (sigma 38) factor | |||||
CGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCGTTAACAGTGGTGAATAACCAATCTCACCAAGGTAAAGCTGAGTCGCGTCCAACACACGCTGTGTGGCTCCCTGCGATAACAGTTCCTCTTCGGCCAAATC > minE/1836963‑1837102 | cGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCGTTAACAGTGGTGAATAACCAATCTCACCAAg < 1:347595/71‑1 (MQ=255)cGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCGTTAACAGTGGTGAATAACCAATCTCACCAAg > 1:1638462/1‑71 (MQ=255) gTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCGTTAACAGTGGTGAATAACCAATCTCACCAAGGTaa < 1:2923782/71‑1 (MQ=255) tGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCGTTAACAGTGGTGAATAACCAATCTCACCAAGGTa > 1:1064994/1‑69 (MQ=255) gcgACGCGCAAAATAAACTTCTTCTTCGGCCGTTAACAGTGGTGAATAACCAATCTCACCAAGGTAAAGCt < 1:2085506/71‑1 (MQ=255) gcgACGCGCAAAATAAACTTCTTCTTCGGCCGTTAACAGTGGTGAATAACCAATCTCACCAAGGTAAAGCt < 1:2739713/71‑1 (MQ=255) gcgACGCGCAAAATAAACTTCTTCTTCGGCCGTTAACAGTGGTGAATAACCAATCTCACCAAGGTAAAGCt < 1:2483438/71‑1 (MQ=255) cgACGCGCAAAATAAACTTCTTCTTCGGCCGTTAACAGTGGTGAATAACCAATCTCACCAAGGTAAAGCt > 1:3538326/1‑70 (MQ=255) cgACGCGCAAAATAAACTTCTTCTTCGGCCGTTAACAGTGGTGAATAACCAATCTCACCAAGGTAAAGCt > 1:3656056/1‑70 (MQ=255) aCGCGCAAAATAAACTTCTTCTTCGGCCGTTAACAGTGGTGAATAACCAATCTCACCAAGGTAAAGCTGAg < 1:1086401/71‑1 (MQ=255) aCGCGCAAAATAAACTTCTTCTTCGGCCGTTAACAGTGGTGAATAACCAATCTCACCAAGGTAAAGCTGAg < 1:3675236/71‑1 (MQ=255) gcgcAAAATAAACTTCTTCTTCGGCCGTTAACAGTGGTGAATAACCAATCTCACCAAGGTAAAGCTGAGTc > 1:1995230/1‑71 (MQ=255) cAAAATAAACTTCTTCTTCGGCCGTTAACAGTGGTGAATAACCAATCTCACCAAGGTAAAGCt > 1:3704830/1‑63 (MQ=255) aaaaTAAACTTCTTCTTCGGCCGTTAACAGTGGTGAATAACCAATCTCACCAAGGTa < 1:3330455/57‑1 (MQ=255) aaaTAAACTTCTTCTTCGGCCGTTAACAGTGGTGAATAACCAATATCACCAAGGTaaa > 1:1313525/1‑58 (MQ=255) aaaCTTCTTCTTCGGCCGTTAACAGTGGTGAATAACCAATCTCACCAAGGTAAAGCTGAGt > 1:1451048/1‑61 (MQ=255) aCTTCTTCTTCGGCCGTTAACAGTGGTGAATAACCAATCTCACCAAGGTAAAGCt < 1:3016387/55‑1 (MQ=255) ttcttcttcGGCCGTTAACAGTGGTGAATAACCAATCTCACCAAGGTAAAGCTGAGTCGCGTCCAacaca > 1:633704/1‑70 (MQ=255) tcttcttcGGCCGTTAACAGTGGTGAATAACCAATCTCACCAAGGTAAAGCt < 1:2685824/52‑1 (MQ=255) tcttcttcGGCCGTTAACAGTGGTGAATAACCAATCTCACCAAGGTAAAGCTGAGTCGCGTCCa > 1:2419605/1‑64 (MQ=255) tcttcGGCCGTTAACAGTGGTGAATAACCAATCTCACCAAGGTAAAGCTGAGTCGCGTCCAACACACGCtg > 1:3762526/1‑71 (MQ=255) tcttcGGCCGTTAACAGTGGTGAATAACCAATCTCACCAAGGTAAAGCTGAGTCGCGTCCAACACACGCtg > 1:3918048/1‑71 (MQ=255) cttcGGCCGTTAACAGTGGTGAATAACCAATCTCACCAAg > 1:346947/1‑40 (MQ=255) ttcGGCCGTTAACAGTGGTGAATAACCAATCTCACCAAGGTAAAGCTGAGTCGCGTc > 1:3418883/1‑57 (MQ=255) ttcGGCCGTTAACAGTGGTGAATAACCAATCTCACCAAGGTAAAGCTGAGTCGCGTc > 1:133591/1‑57 (MQ=255) ttcGGCCGTTAACAGTGGTGAATAACCAATCTCACCAAGGTAAAGCTGAGTCGCGTCCAACACACGCtgtg > 1:3342984/1‑71 (MQ=255) cGGCCGTTAACAGTGGTGAATAACCAATCTCACCAAGGTAAAGCTGAGTCGCGTCCAACACACGCtgtgt < 1:1438652/70‑1 (MQ=255) cGGCCGTTAACAGTGGTGAATAACCAATCTCACCAAGGTAAAGCTGAGTCGCGTCCAACACACGCtgtgt < 1:882199/70‑1 (MQ=255) cGGCCGTTAACAGTGGTGAATAACCAATCTCACCAAGGTAAAGCTGAGTCGCGTCCAACACACGCtgtgt < 1:3541670/70‑1 (MQ=255) cGGCCGTTAACAGTGGTGAATAACCAATCTCACCAAGGTAAAGCTGAGTCGCGTCCAACACACGCtgtg < 1:2696111/69‑1 (MQ=255) cGGCCGTTAACAGTGGTGAATAACCAATCTCACCAAGGTAAAGCTGAGTCGCGTCCAACACACGCtgtg < 1:1234564/69‑1 (MQ=255) cGGCCGTTAACAGTGGTGAATAACCAATCTCACCAAGGTAAAGCTGAGTCGCGTCCAACACACGCtgtg < 1:3085374/69‑1 (MQ=255) ccGTTAACAGTGGTGAATAACCAATCTCACCAAGGTAAAGCTGAGTCGCGTCCaa < 1:679886/55‑1 (MQ=255) cGTTAACAGTGGTGAATAACCAATCTCACCAAGGTAAAGCTGAGTCGCGTCCAACACACGCTGTGTgg > 1:89609/1‑68 (MQ=255) cGTTAACAGTGGTGAATAACCAATCTCACCAAGGTAAAGCTGAGTCGCGTCCAACACACGCTGTGTgg > 1:138057/1‑68 (MQ=255) cGTTAACAGTGGTGAATAACCAATCTCACCAAGGTAAAGCTGAGTCGCGTCCAACACACGCTGTGTGGCTc < 1:821753/71‑1 (MQ=255) cGTTAACAGTGGTGAATAAACAATCTCACCAAGGTAAAGCTGAGTCGCGTCCAACACACGCTGTGTGGCTc > 1:175910/1‑71 (MQ=255) gTTAACAGTGGTGAATAACCAATCTCACCAAGGTAAAGCTGAGTCGCGTCCAACACACGCtgtgtg > 1:563464/1‑66 (MQ=255) gTTAACAGTGGTGAATAACCAATCTCACCAAGGTAAAGCTGAGTCGCGTCCAACACACGCTGTGTGGCTcc < 1:389263/71‑1 (MQ=255) gTTAACAGTGGTGAATAACCAATCTCACCAAGGTAAAGCTGAGTCGCGTCCAACACACGCTGTGTGGCTcc < 1:424894/71‑1 (MQ=255) ttAACAGTGGTGAATAACCAATCTCACCAAGGTAAAGCt < 1:3721958/39‑1 (MQ=255) ttAACAGTGGTGAATAACCAATCTCACCAAGGTAAAGCt < 1:3393119/39‑1 (MQ=255) ttAACAGTGGTGAATAACCAATCTCACCAAGGTAAAGCTGAGTCGCGTCCAACACACGCtg < 1:3272655/61‑1 (MQ=255) tAACAGTGGTGAATAACCAATCTCACCAAGGTAAAGCTGAGTCGCGTc > 1:490225/1‑48 (MQ=255) aaCAGTGGTGAATAACCAATCTCACCAAGGTAAAGCTGAGTCGCGTCCAACACACGCTGTGTGGCTcc > 1:1267544/1‑68 (MQ=255) aaCAGTGGTGAATAACCAATCTCACCAAGGTAAAGCTGAGTCGCGTCCAACACACGCTGTGTGGCTCCCTg > 1:3448873/1‑71 (MQ=255) aGTGGTGAATAACCAATCTCACCAAGGTAAAGCTGAGTCGCGTCCAACACACGCTGTGTGGCTCCCTGCGa > 1:2274459/1‑71 (MQ=255) aGTGGTGAATAACCAATCTCACCAAGGTAAAGCTGAGTCGCGTCCAACACACGCTGTGTGGCTCCCTGCGa > 1:2385436/1‑71 (MQ=255) gtggtgAATAACCAATCTCACCAAGGTAAAGCTGAGTCGCGTCCAACACACg > 1:924875/1‑52 (MQ=255) gtggtgAATAACCAATCTCACCAAGGTAAAGCTGAGTCGCGTCCAACACACGCTGTGTGGCt < 1:800170/62‑1 (MQ=255) gtggtgAATAACCAATCTCACCAAGGTAAAGCTGAGTCGCGTCCAACACACGCTGTGTGGCTCCCTGCGa > 1:641175/1‑70 (MQ=255) tggtgagattggttattcaccaAGGTAAAGCTGAGTCGCGTCCAACACACGCTGTGTGGCTCCCTGCGAt > 1:3306053‑M2/23‑70 (MQ=255) TGGTGAATAACCAATCTCACCAAGGTAAAGCTGAGt > 1:2093056‑M1/1‑36 (MQ=255) TGGTGAATAACCAATCTCACCAAGGTAAAGCTGAGTCGCGTCCAACACACGCTGTGTGGCTCCCTGCGa < 1:3938928‑M1/69‑1 (MQ=255) TGGTGAATAACCAATCTCACCAAGGTAAAGCTGAGTCGCGTCCAACACACGCTGTGTGGCTCCCTGCGAt < 1:55616‑M1/70‑1 (MQ=255) GGTGAATAACCAATCTCACCAAGGTAAAGCTGAGTCGCGTCCAACACACGCtg > 1:3242409‑M1/1‑53 (MQ=255) gtgagattggttattcaccaAGGTAAAGCTGAGTCGCGTCCAACACACGCTGTGTGGCTCCCTGCGATa < 1:2117698‑M2/49‑1 (MQ=255) gtgagattggttattcaccaAGGTAAAGCTGAGTCGCGTCCAACACACGCTGTGTGGCTCCCTGCGATa < 1:1113710‑M2/49‑1 (MQ=255) TGAATAACCAATCTCACCAAGGTAAAGCTGAGTCGCGTCCAacacac > 1:2082490‑M1/1‑47 (MQ=255) TGAATAACCAATCTCACCAAGGTAAAGCTGAGTCGCGTCCAACACACGCTGTGTGGCTCCCTGc > 1:3701781‑M1/1‑64 (MQ=255) TGAATAACCAATCTCACCAAGGTAAAGCTGAGTCGCGTCCAACACAAGCTGTGTGGCTCCCTGCGATaa < 1:1567034‑M1/69‑1 (MQ=255) gagattggttattcaccaAGGTAAAGCTGAGTCGCGTCCAACACACGCtgtgt > 1:2122382‑M2/19‑53 (MQ=255) gagattggttattcaccaAGGTAAAGCTGAGTCGCGTCCAACACACGCtgtgt > 1:843732‑M2/19‑53 (MQ=255) AATAACCAATCTCACCAAGGTAAAGCTGAGTCGCGTCCAACACACGCTGTGTGGCTCCCTGCGATAACAGt > 1:838995‑M1/1‑71 (MQ=255) aTAACCAATCTCACCAAGGTAAAGCTGAGTCGCGTc > 1:1953120/1‑36 (MQ=255) tAACCAATCTCACCAAGGTAAAGCTGAGTCGCGTCCAACACACGCTGTGTGGCTCCCTGCGATAACAGt < 1:998441/69‑1 (MQ=255) tAACCAATCTCACCAAGGTAAAGCTGAGTCGCGTCCAACACACGCTGTGTGGCTCCCTGCGATAACAGTTc > 1:1623016/1‑71 (MQ=255) aaCCAATCTCACCAAGGTAAAGCTGAGTCGCGTCCaa < 1:3698501/37‑1 (MQ=255) aCCAATCTCACCAAGGTAAAGCTGAGTCGCGTCCAACACACGCtgt < 1:2927536/46‑1 (MQ=255) aCCAATCTCACCAAGGTAAAGCTGAGTCGCGTCCAACACACGCtgt < 1:1466736/46‑1 (MQ=255) aCCAATCTCACCAAGGTAAAGCTGAGTCGCGTCCAACACACGCTGTGTGGCTCCCTGCGATAACAGTTCct < 1:2650681/71‑1 (MQ=255) aCCAATCTCACCAAGGTAAAGCTGAGTCGCGTCCAACACACGCTGTGTGGCTCCCTGCGATAACAGTTCct < 1:1999222/71‑1 (MQ=255) ccAATCTCACCAAGGTAAAGCTGAGTCGCGTCCAACACACGCTGTGTGGCTCCCTGCGATAACAGTTCctc > 1:1811273/1‑71 (MQ=255) aaTCTCACCAAGGTAAAGCTGAGTCGCGTCCAACACACGCTGTGTGGCTCCCTGCGATAACAGt < 1:3009937/64‑1 (MQ=255) aaTCTCACCAAGGTAAAGCTGAGTCGCGTCCAACACACGCTGTGTGGCTCCCTGCGATAACAGTTCCTCtt > 1:3472389/1‑71 (MQ=255) aTCTCACCAAGGTAAAGCTGAGTCGCGTCCAACACACGCtgt < 1:3769109/42‑1 (MQ=255) aTCTCACCAAGGTAAAGCTGAGTCGCGTCCAACACACGCtgt < 1:3639274/42‑1 (MQ=255) aTCTCACCAAGGTAAAGCTGAGTCGCGTCCAACACACGCTGTGTGGCTCCCTGCGATAACAGTTCCTCTTc > 1:643292/1‑71 (MQ=255) aTCTCACCAAGGTAAAGCTGAGTCGCGTCCAACACACGCTGTGTGGCTCCCTGCGATAACAGTTCCTCTTc > 1:2307421/1‑71 (MQ=255) tctcACCAAGGTAAAGCTGAGTCGCGTCCAACACACGCTGTGTGGCTCCCTGCGATAACAGTTCCTCTTCg > 1:45561/1‑71 (MQ=255) tcaccaAGGTAAAGCTGAGTCGCGTCCAACACACGCTGTGTGGCTCCCTGCGATAACAGTTCCTCTTc > 1:495124‑M2/7‑68 (MQ=255) accaAGGTAAAGCTGAGTCGCGTCCAACACACGCTGTGTGGCTCCCTGCGATAACAGTTCCTCTTCgg < 1:743946‑M2/64‑1 (MQ=255) ccaAGGTAAAGCTGAGTCGCGTCCAACACACGCTGTGTGGCTCCCTGCGATAACAGTTCCTCTTCGGCCa > 1:2931997‑M2/4‑70 (MQ=255) caAGGTAAAGCTGAGTCGCGTCCAACACACGCTGTGTGGCTCCCTGCGATAACAGTTCCTCTTCGGCCaaa > 1:2588049‑M2/3‑71 (MQ=255) caAGGTAAAGCTGAGTCGCGTCCAACACACGCTGTGTGGCTCCCTGCGATAACAGTTCCTCTTCGGCCaaa > 1:2592702‑M2/3‑71 (MQ=255) aAGGTAAAGCTGAGTCGCGTCCAACACACGCTGTGTGGCTCCCTGCGATAACAGTTCCTCTTCGGCCaaa > 1:975649‑M2/2‑70 (MQ=255) aGGTAAAGCTGAGTCGCGTCCAACACACGCTGTGTGGCTCCCTGCGATAACAGTTCCTCTTCGGCCAAATc < 1:3249297/71‑1 (MQ=255) aGGTAAAGCTGAGTCGCGTCCAACACACGCTGTGTGGCTCCCTGCGATAACAGTTCCTCTTCGGCCAAATc > 1:1472681/1‑71 (MQ=255) | CGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCGTTAACAGTGGTGAATAACCAATCTCACCAAGGTAAAGCTGAGTCGCGTCCAACACACGCTGTGTGGCTCCCTGCGATAACAGTTCCTCTTCGGCCAAATC > minE/1836963‑1837102 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |